Spg024690 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg024690
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Protein Ycf2
Location	scaffold12: 11295192 .. 11297772 (-)
RNA-Seq Expression	Spg024690
Synteny	Spg024690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTCCAGAAACCTTTTGCTTGAGCATTTCTTCTCGCCTGGTCTGTTGCTGCAGCAAGGAAAAATTCTGGAGGTAGTGTTGACTTGTGTGATCCACTTTAAGCTTAGTTCTAGTCCCACGCTTAGGTTGAAAATTCAGATAGAAAAATTTAAGTTTGGGGGTATATTTGCAAAATTAATGATTCATTGGGGACAATGAATAATTCAAGTTTGGGGGACTTTTTGCTACTCCAATTGTTTTGCTCGAGCATTCCTCTCCTTCATTAACAATTTTGTAGGTTATTGAGTAACCGGGGACATTTGTGATACCCACAGTTTTTCTTCGCGTCAAAAGATGACCTAGGAAATATGAAAAAATGATGAGAAAATTTATTTGCTGAAAAAATTATTTGTTAAAAATTTTGCGGAGAAAATTCATGGAGCAAAAGTTTTGAAGGATGAATGATGATCCAGCAGTTTTCTGTCTCCCAGAACTTAGGTGAGCTTCATCATAAAATGTTGCCATTCTAAGGGGCAAGAGATAGAATAACTAAGGATTTTTTAGCTTTACAATGAGTATTGAGCCTAGTTAGGTGATAAGCTTGAGGCATGGGTATACTGCACCATAAAGTGGGTCATCCCATGCTTAAAAGCTTATGACTGTAAGGCTGCTCTAAGTCTGATAAATAAGAAAATAAACCCCTGTAAAAATATGTTTTGAAATGTCTGAAAATAGAGCTAGGCTGTGGTGAGTCCTTAGAATTAAGTTGGAAAGTGGTGATTATTTGTCCATGCCGGAGGAATCATTTTGCTGCAGCAGAGCTTGGTGTTGTAGAGTGCTCAGGTAAAGGTTAAAGGTAGTGTTGGACTATCTGGTTTAATTAAGCTATTCTTTGTCTAATGTTTTGAATTCTTGAAGGTAGATAGGTTAGTATTGCTCGGGACGCGCAATAGTTCAACTTTGGGGGTATGATAACTGCCCAAAGGGTAGTTATTTAGGCCTCATTTATATAAAGATTTGTGTGTCTTTAATGCTTAATAGGGTTGGTTTTAGAGAGATATTACATGATTTAACCCATTTGGAAGAATGGAAGCTCTAGAAATCATTTTGTGTAGAATCTGTTGCTGGGCGACTGGAAGGAGCAAATTCTGTGCTGCAGCAAAACTGGGAGCAGAAACTGCCACGTCACAGCTCGTTAGCCAACTTCATGAACCGACTTCTATTGAGTTATTTTCGGGATAAAGGAGCAAGGAGAGCCCTACACGTGTCCAGATTGACCTAATTCAAGCCTCCTATCCTTCTATAAAAGGAAGTAGCCGCCCAAGTCAAAGTCATTCCATGTTTTCCCTTGGAAGCCGAATAGTATAGGGAGATTGAAGATCATCAAGAACACCATCATCCGCAAGCTGATTAGGGAGTTTATTCTCTTTATTAACTTGTGGTTATGGACATGCCTACTCAGATTGTAACTTGTATTCCTATGTCTGTTATGAACTAAGTAGCTTAAGGTGTTGGTTAGGAATAATGTGATTACTGTGCTTCATCTCTAGTAATATATTGACTATCGCATTTTGGTTAATTGTTGTGCTTATTCTCATTTTATGCCCGCCTGGCCAGTCGGTATGGATAGCTCTCTCTAGTTTCAGGGATGATTTAGAGAGTGTGTGGCAATTATCCACACTACGATCATTGTGTATTGGTGAATGCCAGTGACTGAGCTAGGGATAGCCAGTTGCCTAGTGCTTGATCGGTCGTACTTCATTGGGGTTGAAACACATCCCAAAAGACCCGGAGTTCCGGGAGGAATCCGCTAATAATACTGCGAGAAATGCATGATCAATAATATTGCTAGAGCATATTTTATAACAATCACTAAAACCTAACCAGCGCCTGTCTTTAATCTGTCTATCTATTTATTCACTTGTTGTTCTGTCATTTATTTTGCTTCAGCATAATTCCGATAAAACCAAATCATTTTACTATTCTTGAAACCATTAGAAAGTTACACAAAATAGGTAGAGTGGAAACTAATTCAGGGCTCGGATTGATAATATTACTTGCTGCAGACTGTGTATACTTGCACAGGAATTCTAGAGTATTTTATATCATATTTTTTACTCACTCTAGGAACCCAACAATCCTATATCTATCTATATGAAGAAGAAATCATGTAACGAAGGGGGGTTCTTATTTGTACAAATGGTACTTCGAACTTGGAACGAGCATGAAGAAATTAACAATACTTCTTTATCTTTTGAGTTGTTCTGCCGGATCGGTCGTTCAAGACCTTTGGTCTCTACCCGGACCGGATGAAAAAAATGGGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCGCTCTGTTGGGATCCTCACGGACAGAAAAAGATTGCAGTCGATCTGATAATGATCGAGTGACATTGCTTCTTAGGCCCGAACCCATGAATCCCTTAGATATGATACAAAATGGATCTTGTTCTATCGTTGATCAGATATTTCTCTATGAACAATACGAATCAGAGTTTGAAGAAGGGAAGGAGAAGGAGTCCTCGACCCGCAACAGATAG

mRNA sequence

ATGATCTCCAGAAACCTTTTGCTTGAGCATTTCTTCTCGCCTGGTCTGTTGCTGCAGCAAGGAAAAATTCTGGAGCTAGGCTGTGGTGAGTCCTTAGAATTAAGTTGGAAAGTGGTGATTATTTGTCCATGCCGGAGGAATCATTTTGCTGCAGCAGAGCTTGGTGTTGTAGAGTGCTCAGAATCTGTTGCTGGGCGACTGGAAGGAGCAAATTCTGTGCTGCAGCAAAACTGGGAGCAGAAACTGCCACGTCACAGCTCTTGTTCTGCCGGATCGGTCGTTCAAGACCTTTGGTCTCTACCCGGACCGGATGAAAAAAATGGGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCGCTCTGTTGGGATCCTCACGGACAGAAAAAGATTGCAGTCGATCTGATAATGATCGAGTGACATTGCTTCTTAGGCCCGAACCCATGAATCCCTTAGATATGATACAAAATGGATCTTGTTCTATCGTTGATCAGATATTTCTCTATGAACAATACGAATCAGAGTTTGAAGAAGGGAAGGAGAAGGAGTCCTCGACCCGCAACAGATAG

Coding sequence (CDS)

ATGATCTCCAGAAACCTTTTGCTTGAGCATTTCTTCTCGCCTGGTCTGTTGCTGCAGCAAGGAAAAATTCTGGAGCTAGGCTGTGGTGAGTCCTTAGAATTAAGTTGGAAAGTGGTGATTATTTGTCCATGCCGGAGGAATCATTTTGCTGCAGCAGAGCTTGGTGTTGTAGAGTGCTCAGAATCTGTTGCTGGGCGACTGGAAGGAGCAAATTCTGTGCTGCAGCAAAACTGGGAGCAGAAACTGCCACGTCACAGCTCTTGTTCTGCCGGATCGGTCGTTCAAGACCTTTGGTCTCTACCCGGACCGGATGAAAAAAATGGGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCGCTCTGTTGGGATCCTCACGGACAGAAAAAGATTGCAGTCGATCTGATAATGATCGAGTGACATTGCTTCTTAGGCCCGAACCCATGAATCCCTTAGATATGATACAAAATGGATCTTGTTCTATCGTTGATCAGATATTTCTCTATGAACAATACGAATCAGAGTTTGAAGAAGGGAAGGAGAAGGAGTCCTCGACCCGCAACAGATAG

Protein sequence

MISRNLLLEHFFSPGLLLQQGKILELGCGESLELSWKVVIICPCRRNHFAAAELGVVECSESVAGRLEGANSVLQQNWEQKLPRHSSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEFEEGKEKESSTRNR

Homology

[Close]

BLAST of Spg024690 vs. NCBI nr
Match: QIT04093.1 (Ycf2 protein [Luffa aegyptiaca] >QIT04110.1 Ycf2 protein [Luffa aegyptiaca] >QKX48604.1 hypothetical chloroplast RF21 [Luffa aegyptiaca] >QKX48623.1 hypothetical chloroplast RF21 [Luffa aegyptiaca])

HSP 1 Score: 205.7 bits (522), Expect = 3.7e-49
Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 87   SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSD 146
            SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSR D
Sbjct: 1955 SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFD 2014

Query: 147  NDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEFEEGK 191
            NDRVTLLLRPEP NPLDMIQNGSCSIVDQ FLYEQYESEFEEG+
Sbjct: 2015 NDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYESEFEEGE 2058

[Close]

BLAST of Spg024690 vs. NCBI nr
Match: YP_010131137.1 (hypothetical protein RF2 [Benincasa hispida] >YP_010131154.1 hypothetical protein RF2 [Benincasa hispida] >QPZ75785.1 hypothetical protein RF2 [Benincasa hispida] >QPZ75802.1 hypothetical protein RF2 [Benincasa hispida] >QSQ72354.1 Ycf2 protein [Benincasa hispida] >QSQ72372.1 Ycf2 protein [Benincasa hispida])

HSP 1 Score: 205.7 bits (522), Expect = 3.7e-49
Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 87   SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSD 146
            SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSR D
Sbjct: 1957 SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFD 2016

Query: 147  NDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEFEEGK 191
            NDRVTLLLRPEP NPLDMIQNGSCSIVDQ FLYEQYESEFEEG+
Sbjct: 2017 NDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYESEFEEGE 2060

[Close]

BLAST of Spg024690 vs. NCBI nr
Match: YP_009752033.1 (Ycf2 protein [Cionosicys macranthus] >YP_009752051.1 Ycf2 protein [Cionosicys macranthus] >QIT05274.1 Ycf2 protein [Cionosicys macranthus] >QIT05292.1 Ycf2 protein [Cionosicys macranthus])

HSP 1 Score: 205.7 bits (522), Expect = 3.7e-49
Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 87   SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSD 146
            SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSR D
Sbjct: 1977 SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFD 2036

Query: 147  NDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEFEEGK 191
            NDRVTLLLRPEP NPLDMIQNGSCSIVDQ FLYEQYESEFEEG+
Sbjct: 2037 NDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYESEFEEGE 2080

[Close]

BLAST of Spg024690 vs. NCBI nr
Match: YP_009751528.1 (Ycf2 protein [Thladiantha dubia] >YP_009751546.1 Ycf2 protein [Thladiantha dubia] >QIT04009.1 Ycf2 protein [Thladiantha dubia] >QIT04027.1 Ycf2 protein [Thladiantha dubia])

HSP 1 Score: 205.7 bits (522), Expect = 3.7e-49
Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 87   SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSD 146
            SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSR D
Sbjct: 1955 SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFD 2014

Query: 147  NDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEFEEGK 191
            NDRVTLLLRPEP NPLDMIQNGSCSIVDQ FLYEQYESEFEEG+
Sbjct: 2015 NDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYESEFEEGE 2058

[Close]

BLAST of Spg024690 vs. NCBI nr
Match: YP_009751696.1 (Ycf2 protein [Hodgsonia heteroclita] >YP_009751714.1 Ycf2 protein [Hodgsonia heteroclita] >QIT04429.1 Ycf2 protein [Hodgsonia heteroclita] >QIT04447.1 Ycf2 protein [Hodgsonia heteroclita])

HSP 1 Score: 205.7 bits (522), Expect = 3.7e-49
Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 87   SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSD 146
            SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSR D
Sbjct: 1953 SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFD 2012

Query: 147  NDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEFEEGK 191
            NDRVTLLLRPEP NPLDMIQNGSCSIVDQ FLYEQYESEFEEG+
Sbjct: 2013 NDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYESEFEEGE 2056

[Close]

BLAST of Spg024690 vs. ExPASy Swiss-Prot
Match: Q0ZIV6 (Protein Ycf2 OS=Vitis vinifera OX=29760 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 6.0e-50
Identity = 95/103 (92.23%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 87   SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSD 146
            SCSAGSV QDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGAL+GSSRTEKDCS+ D
Sbjct: 1973 SCSAGSVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALVGSSRTEKDCSQFD 2032

Query: 147  NDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEFEEG 190
            NDRVTLLLRPEP NPLDM+QNGSCSIVDQ FLYE+YESEFEEG
Sbjct: 2033 NDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYESEFEEG 2075

[Close]

BLAST of Spg024690 vs. ExPASy Swiss-Prot
Match: A7Y3J6 (Protein Ycf2 OS=Ipomoea purpurea OX=4121 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 7.8e-50
Identity = 94/103 (91.26%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 87   SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSD 146
            SCSAGSV QDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGAL+GSSRTEK+CS+ D
Sbjct: 1866 SCSAGSVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALVGSSRTEKNCSQFD 1925

Query: 147  NDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEFEEG 190
            NDRVTLLLRPEP NPLDM+QNGSCSI+DQIFLYE+YESEFEEG
Sbjct: 1926 NDRVTLLLRPEPRNPLDMMQNGSCSILDQIFLYEKYESEFEEG 1968

[Close]

BLAST of Spg024690 vs. ExPASy Swiss-Prot
Match: Q9B1K6 (Protein Ycf2 OS=Lotus japonicus OX=34305 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.3e-49
Identity = 94/104 (90.38%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 87   SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSD 146
            SCSAG+V QDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGAL+GSSRTEKDCS+ D
Sbjct: 1966 SCSAGAVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALVGSSRTEKDCSQFD 2025

Query: 147  NDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEFEEGK 191
            NDRVTLLLRPEP NPL+MIQNGSCSIVDQ FLYE+YESEFEEG+
Sbjct: 2026 NDRVTLLLRPEPSNPLNMIQNGSCSIVDQRFLYEKYESEFEEGE 2069

[Close]

BLAST of Spg024690 vs. ExPASy Swiss-Prot
Match: A0A379 (Protein Ycf2 OS=Coffea arabica OX=13443 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 5.1e-49
Identity = 93/104 (89.42%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 87   SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSD 146
            SCSAGSV QDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGAL+GSSRTEKDCS+ D
Sbjct: 1954 SCSAGSVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALVGSSRTEKDCSQFD 2013

Query: 147  NDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEFEEGK 191
            NDRVTLLLRPEP NPLDM+Q+GSCSI+DQ FLYE+YESEFEEG+
Sbjct: 2014 NDRVTLLLRPEPRNPLDMMQSGSCSILDQRFLYEKYESEFEEGE 2057

[Close]

BLAST of Spg024690 vs. ExPASy Swiss-Prot
Match: Q09MB4 (Protein Ycf2 OS=Citrus sinensis OX=2711 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.1e-48
Identity = 94/104 (90.38%), Postives = 98/104 (94.23%), Query Frame = 0


Query: 87   SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSD 146
            SCSAGSV QDLWSLPGPDEKNGITS GLVENDSDLVHGLLEVEGAL+GSSRTEKDCSR D
Sbjct: 1955 SCSAGSVAQDLWSLPGPDEKNGITSSGLVENDSDLVHGLLEVEGALVGSSRTEKDCSRFD 2014

Query: 147  NDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEFEEGK 191
            NDRVTLLLRPEP NPLDM+Q GSCSIVDQ FLYE+YESEFEEG+
Sbjct: 2015 NDRVTLLLRPEPRNPLDMMQKGSCSIVDQRFLYEKYESEFEEGE 2058

[Close]

BLAST of Spg024690 vs. ExPASy TrEMBL
Match: A0A343F2F1 (Protein Ycf2 OS=Citrullus colocynthis OX=252529 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.8e-49
Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 87   SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSD 146
            SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSR D
Sbjct: 1953 SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFD 2012

Query: 147  NDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEFEEGK 191
            NDRVTLLLRPEP NPLDMIQNGSCSIVDQ FLYEQYESEFEEG+
Sbjct: 2013 NDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYESEFEEGE 2056

[Close]

BLAST of Spg024690 vs. ExPASy TrEMBL
Match: A0A6H0ET42 (Protein Ycf2 OS=Trichosanthes kirilowii OX=3677 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.8e-49
Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 87   SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSD 146
            SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSR D
Sbjct: 1952 SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFD 2011

Query: 147  NDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEFEEGK 191
            NDRVTLLLRPEP NPLDMIQNGSCSIVDQ FLYEQYESEFEEG+
Sbjct: 2012 NDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYESEFEEGE 2055

[Close]

BLAST of Spg024690 vs. ExPASy TrEMBL
Match: A0A6H0EV63 (Protein Ycf2 OS=Corallocarpus boehmii OX=386154 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.8e-49
Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 87   SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSD 146
            SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSR D
Sbjct: 1963 SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFD 2022

Query: 147  NDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEFEEGK 191
            NDRVTLLLRPEP NPLDMIQNGSCSIVDQ FLYEQYESEFEEG+
Sbjct: 2023 NDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYESEFEEGE 2066

[Close]

BLAST of Spg024690 vs. ExPASy TrEMBL
Match: A0A6M3RUH1 (Protein Ycf2 OS=Trichosanthes rosthornii OX=676073 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.8e-49
Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 87   SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSD 146
            SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSR D
Sbjct: 1955 SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFD 2014

Query: 147  NDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEFEEGK 191
            NDRVTLLLRPEP NPLDMIQNGSCSIVDQ FLYEQYESEFEEG+
Sbjct: 2015 NDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYESEFEEGE 2058

[Close]

BLAST of Spg024690 vs. ExPASy TrEMBL
Match: A0A6H0ESM3 (Protein Ycf2 OS=Trichosanthes tubiflora OX=1144424 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.8e-49
Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 87   SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSD 146
            SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSR D
Sbjct: 1955 SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFD 2014

Query: 147  NDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEFEEGK 191
            NDRVTLLLRPEP NPLDMIQNGSCSIVDQ FLYEQYESEFEEG+
Sbjct: 2015 NDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYEQYESEFEEGE 2058

[Close]

BLAST of Spg024690 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 177.6 bits (449), Expect = 1.0e-44
Identity = 86/104 (82.69%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 87   SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSD 146
            SCSAGSV QDLWSLP PDEKN ITSYG VENDSDLVHGLLEV+GAL+GSSRTEKDCS+ D
Sbjct: 1967 SCSAGSVAQDLWSLPVPDEKNRITSYGFVENDSDLVHGLLEVQGALVGSSRTEKDCSQFD 2026

Query: 147  NDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEFEEGK 191
            NDRVTLL R EP +PL M+Q+GSCSIVDQ FLYE+YESEFEEG+
Sbjct: 2027 NDRVTLLFRSEPRDPLYMMQDGSCSIVDQRFLYEKYESEFEEGE 2070

[Close]

BLAST of Spg024690 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 177.6 bits (449), Expect = 1.0e-44
Identity = 86/104 (82.69%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 87   SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSD 146
            SCSAGSV QDLWSLP PDEKN ITSYG VENDSDLVHGLLEV+GAL+GSSRTEKDCS+ D
Sbjct: 1967 SCSAGSVAQDLWSLPVPDEKNRITSYGFVENDSDLVHGLLEVQGALVGSSRTEKDCSQFD 2026

Query: 147  NDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEFEEGK 191
            NDRVTLL R EP +PL M+Q+GSCSIVDQ FLYE+YESEFEEG+
Sbjct: 2027 NDRVTLLFRSEPRDPLYMMQDGSCSIVDQRFLYEKYESEFEEGE 2070

The following BLAST results are available for this feature:

BLAST of Spg024690 vs. NCBI nr


Match Name	E-value	Identity	Description
QIT04093.1	3.7e-49	96.15	Ycf2 protein [Luffa aegyptiaca] >QIT04110.1 Ycf2 protein [Luffa aegyptiaca] >QKX...	[more]
YP_010131137.1	3.7e-49	96.15	hypothetical protein RF2 [Benincasa hispida] >YP_010131154.1 hypothetical protei...	[more]
YP_009752033.1	3.7e-49	96.15	Ycf2 protein [Cionosicys macranthus] >YP_009752051.1 Ycf2 protein [Cionosicys ma...	[more]
YP_009751528.1	3.7e-49	96.15	Ycf2 protein [Thladiantha dubia] >YP_009751546.1 Ycf2 protein [Thladiantha dubia...	[more]
YP_009751696.1	3.7e-49	96.15	Ycf2 protein [Hodgsonia heteroclita] >YP_009751714.1 Ycf2 protein [Hodgsonia het...	[more]

BLAST of Spg024690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0ZIV6	6.0e-50	92.23	Protein Ycf2 OS=Vitis vinifera OX=29760 GN=ycf2-A PE=3 SV=1	[more]
A7Y3J6	7.8e-50	91.26	Protein Ycf2 OS=Ipomoea purpurea OX=4121 GN=ycf2-A PE=3 SV=1	[more]
Q9B1K6	2.3e-49	90.38	Protein Ycf2 OS=Lotus japonicus OX=34305 GN=ycf2-A PE=3 SV=1	[more]
A0A379	5.1e-49	89.42	Protein Ycf2 OS=Coffea arabica OX=13443 GN=ycf2-A PE=3 SV=1	[more]
Q09MB4	1.1e-48	90.38	Protein Ycf2 OS=Citrus sinensis OX=2711 GN=ycf2-A PE=3 SV=1	[more]

BLAST of Spg024690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A343F2F1	1.8e-49	96.15	Protein Ycf2 OS=Citrullus colocynthis OX=252529 GN=ycf2 PE=3 SV=1	[more]
A0A6H0ET42	1.8e-49	96.15	Protein Ycf2 OS=Trichosanthes kirilowii OX=3677 GN=ycf2 PE=3 SV=1	[more]
A0A6H0EV63	1.8e-49	96.15	Protein Ycf2 OS=Corallocarpus boehmii OX=386154 GN=ycf2 PE=3 SV=1	[more]
A0A6M3RUH1	1.8e-49	96.15	Protein Ycf2 OS=Trichosanthes rosthornii OX=676073 GN=ycf2 PE=3 SV=1	[more]
A0A6H0ESM3	1.8e-49	96.15	Protein Ycf2 OS=Trichosanthes tubiflora OX=1144424 GN=ycf2 PE=3 SV=1	[more]

BLAST of Spg024690 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	1.0e-44	82.69	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	1.0e-44	82.69	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 87..194
None	No IPR available	PANTHER	PTHR33078:SF55	PROTEIN YCF2	coord: 87..194

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg024690.1	Spg024690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity