Spg024577 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg024577
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationscaffold12: 19890488 .. 19892504 (-)
RNA-Seq ExpressionSpg024577
SyntenySpg024577
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGGAATAAGAGGTGAGATTTGATTTTCTTGAAAGTTAGTTCCTTTTCTAACAAAATGCATGAAGTAATCTTGAGCTAAATCGTATGAGAAGTTAATGGATTTGTTAATGGAAAACAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTTTGGGGTGTACAAGTCGAATCAGAAGCTATATTTGGTATGGTTGGAAAGCTTATTCAATTTCCTACAACGTGCATGAAGATTTTGTGAGCCAAAAATGACTTTAAGTAGGGTTAATTTCAGGACTTAGATAAAGGGTAGCAGAGAACCTCAAATCTGTGTTGTCTGTGTTGGGGGCAATTCTGGGCAAATTGGTTGGGAATCGCATTTTTATTTCTTCAGGTAAGTTGTAGAGTGTTCGACAAGGAAGAGTTTGATTTGTATTTCATTAATTGTGGTTAAGTATTAAGGAAGTTATGGGTGTTGGAAATTAGGGTATAGAATCTGGAAAATCTGGAAAGTAGAATGTGAATGTGATTCTTAATCCAATTGTTTAAAAATTCATGAGCATGGAAAGACAAAGCTATCTATGGTTTTAATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTGAGTGACAAAATGAATTTCGAAAATGGTTTCCAACGGTTGTTCATGTTTAGATGTTTACATGCTTTTCTATGAATGATACATGGTTTTTATGAACAGTTTCAAGCATGAGTTCTGAGCTCAGATTTTCTAATGAGGTTTATATACGAGCACGTGGCTAATGACTTTATGAAAAGTAGTTGAAACGATATCTTTTAAAGTAAAGTATGGATTAGCAAGTACTTTTAAACGATTTTCAGTTTTTCACGAGCAAGCTGAGTAAGTTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAATGCTGGGCGGGCCCCACTATGACAAAGACGATGGGAGTGCTGGGCGGGCCTCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTGATATGCCTTGCTAGATTTTTAATGACGAACTTGCGAGATATTTTAGAAAGCCTTTTTCATTACACGTTTATGTTAAACGCTTGAATTGAGCATATTTATACGTTTAAAGGTTTATCACGTGTTTTGGCTTCCGGATTTAGAGTTTTAAATTCAGTCACTCACTGGGCTCCATAGCTCATTCTTTCAAAATGTTTTTCCACTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATAGTCTGTTCATATTGTAAATGTTTTGTAAGGATTGGATAATATAGTCCTAGAGGTCGTGGTTGTATAAACCCTAGTTGTATATGTTTTTGGTTGTGACATCTATATCAGGTTATTATCCGAACCAAGTTATGTCAGGGCGGCACCTCGTGTTTGTTGGAAGTTTTTTTTTTCAGGGATTCCGCTGTGTTCTGTTTCATGTAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGTCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGGCTTATAA

mRNA sequence

ATGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTATAAAGGGTAGCAGAGAACCTCAAATCTGTGTTGTCTGTGTTGGGGGCAATTCTGGGCAAATTGGTTGGGAATCGCATTTTTATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGTCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGGCTTATAA

Coding sequence (CDS)

ATGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTATAAAGGGTAGCAGAGAACCTCAAATCTGTGTTGTCTGTGTTGGGGGCAATTCTGGGCAAATTGGTTGGGAATCGCATTTTTATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGTCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGGCTTATAA

Protein sequence

MVLRLKKIRKAHAKPAIAESGCKTIKGSREPQICVVCVGGNSGQIGWESHFYFFRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSKCFISMISMFIRFNVQEGQRVSLEEDDVRWLHVIFRAKLAGGPGGGVTGL
Homology
[Close]
BLAST of Spg024577 vs. NCBI nr
Match: KAA0052218.1 (uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK01785.1 uncharacterized protein E5676_scaffold113G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-17
Identity = 65/161 (40.37%), Postives = 85/161 (52.80%), Query Frame = 0 

Query: 8   IRKAHAKPAIAESGCKTIKGSREPQICVVCV-------GGNSGQIGWESHFYFFR----- 67
           I K +AKPAIAESGC       +P I +  +       G ++  +     F  F      
Sbjct: 23  IEKVNAKPAIAESGCNC-----QPLIVLFGLSYLEELRGESTRFLSKSGGFLVFSDALSI 82

Query: 68  -PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSKCFISMISMFIRFNV------ 127
            PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+++S  ++ +    +   +      
Sbjct: 83  LPRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLFYKPS 142

Query: 128 ---------QEGQRVSLEEDDVRWLHVIFRAKLAGGPGGGV 141
                     EG    +  DD+ WLH +F AK AG PGGGV
Sbjct: 143 DVRVASYVCWEGSAGIVRGDDLCWLHAVFWAKTAGSPGGGV 178

[Close]
BLAST of Spg024577 vs. NCBI nr
Match: KAA0067117.1 (hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa] >TYJ97479.1 hypothetical protein E5676_scaffold598G00400 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 3.0e-16
Identity = 56/118 (47.46%), Postives = 66/118 (55.93%), Query Frame = 0 

Query: 56  PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSKCFIS 115
           PRGNRSSLQTGELDKT                 VEIELPVPDTLPTSAES  ++S  ++ 
Sbjct: 95  PRGNRSSLQTGELDKTVIFLLSTLSVLYDNNAVVEIELPVPDTLPTSAESFGSNSSTWLE 154

Query: 116 MISMFIRFNV---------------QEGQRVSLEEDDVRWLHVIFRAKLAGGPGGGVT 142
           +   F+   +                EG    +  DDV WLH +FRAK+AGGPGGGVT
Sbjct: 155 LYFEFVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHTVFRAKIAGGPGGGVT 212

[Close]
BLAST of Spg024577 vs. NCBI nr
Match: KAA0064296.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK01032.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 6.7e-16
Identity = 56/106 (52.83%), Postives = 65/106 (61.32%), Query Frame = 0 

Query: 55  RPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSKCFI 114
           +PRGN+ SLQTGELDKT                 VEIEL VPDTLPTSAES  ++S  F 
Sbjct: 554 KPRGNKPSLQTGELDKTVIFPLSTFSVLHDNDAVVEIELSVPDTLPTSAESYGSNSSYFT 613

Query: 115 S--MISMFIRFNVQEGQRVSLEEDDVRWLHVIFRAKLAGGPGGGVT 142
           +  M  + + FNV  G    +  DDV  LHV+FRAK AGGPGGGVT
Sbjct: 614 NQVMSGLHLVFNVSVGSTGIVRGDDVCCLHVVFRAKTAGGPGGGVT 659

[Close]
BLAST of Spg024577 vs. NCBI nr
Match: TYK11835.1 (uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-15
Identity = 57/122 (46.72%), Postives = 67/122 (54.92%), Query Frame = 0 

Query: 53  FFRPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRTSSKCFI 112
           +  PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS ++S  ++
Sbjct: 60  YLGPRGNRLSLQTGELDKTVIFSLSTLSVLRDNNAVIELPVPDTLPTSAESSGSNSSTWL 119

Query: 113 SM------ISMF------------IRFNVQEGQRVSLEEDDVRWLHVIFRAKLAGGPGGG 142
            +      + MF            + FNV  G    +  DDV WLH +FRAK  GGPGGG
Sbjct: 120 ELYFESVHVEMFCSFTNQVMSELHLVFNVSVGSTGIVRGDDVCWLHAVFRAKTVGGPGGG 179

[Close]
BLAST of Spg024577 vs. NCBI nr
Match: KAA0051980.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 1.9e-15
Identity = 56/121 (46.28%), Postives = 66/121 (54.55%), Query Frame = 0 

Query: 55  RPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSKCFI 114
           RPRGNR+SLQTGELDKT                 VEIELPVPDTLPTSAESS ++S  ++
Sbjct: 30  RPRGNRTSLQTGELDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESSGSNSSTWL 89

Query: 115 SMISMFIR------------------FNVQEGQRVSLEEDDVRWLHVIFRAKLAGGPGGG 141
            +   F+                   FNV  G    +  D+V WLH +F AK AGGPGGG
Sbjct: 90  ELNFEFVHVEIFYYFTNQVMSGLHLVFNVSVGSTRIVRGDNVCWLHAVFWAKTAGGPGGG 149

[Close]
BLAST of Spg024577 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 5.9e-18
Identity = 65/161 (40.37%), Postives = 85/161 (52.80%), Query Frame = 0 

Query: 8   IRKAHAKPAIAESGCKTIKGSREPQICVVCV-------GGNSGQIGWESHFYFFR----- 67
           I K +AKPAIAESGC       +P I +  +       G ++  +     F  F      
Sbjct: 23  IEKVNAKPAIAESGCNC-----QPLIVLFGLSYLEELRGESTRFLSKSGGFLVFSDALSI 82

Query: 68  -PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSKCFISMISMFIRFNV------ 127
            PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+++S  ++ +    +   +      
Sbjct: 83  LPRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLFYKPS 142

Query: 128 ---------QEGQRVSLEEDDVRWLHVIFRAKLAGGPGGGV 141
                     EG    +  DD+ WLH +F AK AG PGGGV
Sbjct: 143 DVRVASYVCWEGSAGIVRGDDLCWLHAVFWAKTAGSPGGGV 178

[Close]
BLAST of Spg024577 vs. ExPASy TrEMBL
Match: A0A5A7VIY9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold598G00400 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-16
Identity = 56/118 (47.46%), Postives = 66/118 (55.93%), Query Frame = 0 

Query: 56  PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSKCFIS 115
           PRGNRSSLQTGELDKT                 VEIELPVPDTLPTSAES  ++S  ++ 
Sbjct: 95  PRGNRSSLQTGELDKTVIFLLSTLSVLYDNNAVVEIELPVPDTLPTSAESFGSNSSTWLE 154

Query: 116 MISMFIRFNV---------------QEGQRVSLEEDDVRWLHVIFRAKLAGGPGGGVT 142
           +   F+   +                EG    +  DDV WLH +FRAK+AGGPGGGVT
Sbjct: 155 LYFEFVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHTVFRAKIAGGPGGGVT 212

[Close]
BLAST of Spg024577 vs. ExPASy TrEMBL
Match: A0A5A7VD33 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00370 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.2e-16
Identity = 56/106 (52.83%), Postives = 65/106 (61.32%), Query Frame = 0 

Query: 55  RPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSKCFI 114
           +PRGN+ SLQTGELDKT                 VEIEL VPDTLPTSAES  ++S  F 
Sbjct: 554 KPRGNKPSLQTGELDKTVIFPLSTFSVLHDNDAVVEIELSVPDTLPTSAESYGSNSSYFT 613

Query: 115 S--MISMFIRFNVQEGQRVSLEEDDVRWLHVIFRAKLAGGPGGGVT 142
           +  M  + + FNV  G    +  DDV  LHV+FRAK AGGPGGGVT
Sbjct: 614 NQVMSGLHLVFNVSVGSTGIVRGDDVCCLHVVFRAKTAGGPGGGVT 659

[Close]
BLAST of Spg024577 vs. ExPASy TrEMBL
Match: A0A5D3CJX3 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00520 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.5e-16
Identity = 57/122 (46.72%), Postives = 67/122 (54.92%), Query Frame = 0 

Query: 53  FFRPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRTSSKCFI 112
           +  PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS ++S  ++
Sbjct: 60  YLGPRGNRLSLQTGELDKTVIFSLSTLSVLRDNNAVIELPVPDTLPTSAESSGSNSSTWL 119

Query: 113 SM------ISMF------------IRFNVQEGQRVSLEEDDVRWLHVIFRAKLAGGPGGG 142
            +      + MF            + FNV  G    +  DDV WLH +FRAK  GGPGGG
Sbjct: 120 ELYFESVHVEMFCSFTNQVMSELHLVFNVSVGSTGIVRGDDVCWLHAVFRAKTVGGPGGG 179

[Close]
BLAST of Spg024577 vs. ExPASy TrEMBL
Match: A0A5A7U9X4 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002130 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 9.4e-16
Identity = 56/121 (46.28%), Postives = 66/121 (54.55%), Query Frame = 0 

Query: 55  RPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSKCFI 114
           RPRGNR+SLQTGELDKT                 VEIELPVPDTLPTSAESS ++S  ++
Sbjct: 30  RPRGNRTSLQTGELDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESSGSNSSTWL 89

Query: 115 SMISMFIR------------------FNVQEGQRVSLEEDDVRWLHVIFRAKLAGGPGGG 141
            +   F+                   FNV  G    +  D+V WLH +F AK AGGPGGG
Sbjct: 90  ELNFEFVHVEIFYYFTNQVMSGLHLVFNVSVGSTRIVRGDNVCWLHAVFWAKTAGGPGGG 149

The following BLAST results are available for this feature:
BLAST of Spg024577 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0052218.11.2e-1740.37uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0067117.13.0e-1647.46hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa] >TYJ9747... [more]
KAA0064296.16.7e-1652.83putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK... [more]
TYK11835.11.1e-1546.72uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa][more]
KAA0051980.11.9e-1546.28DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 D... [more]
BLAST of Spg024577 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg024577 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UAH65.9e-1840.37CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7VIY91.5e-1647.46Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VD333.2e-1652.83Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=... [more]
A0A5D3CJX35.5e-1646.72CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7U9X49.4e-1646.28DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
BLAST of Spg024577 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg024577.1Spg024577.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
molecular_function GO:0003824 catalytic activity