Spg024490 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg024490
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold12: 16433166 .. 16434154 (+)
RNA-Seq Expression	Spg024490
Synteny	Spg024490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGCCTCTCCTGCACCTCCTACCTCCACACCTGTCAAACCGAAGATCAAATCGCCTAAAGCTCCATCACCAAAGAATCTGTTCCCTAAAGTCATCAAGGATGTTAATTTCCAGGAGAGAATGGAGATTGTGAGAAAAAGAGACTTCTTGAACGAGAAGGGATTCTCAAACAGAGTAGGGACTTTGTCAGACTTTGTAACCAAAGTAATCACTCAGTACAAAATGGCAGGAATTCTGTGCTCACCCTCAGGAGGCCATGGTGCCTCTAGTTCGAGAATTTTATGCTGGATTGAGGGAGGAGAGCATGAGCATGGCGGTGGTGAGAGGTAGAATAGTCAGTTTCTCTTCGGTTGATATCAACAAGGTGTACCAGATTAAGGCACCTTTGCATCCAAGAGGCAATGATGCAATCAAGAACCCCTCGACCAAACAGTTGAAAGAAGCATTGAAGATGGTGGTCAACAAGGGATTTCAGTGGAAGGAGTCTCAAACAAAGGTGAAGACACTAGTGCCCAGTGATCTCAAGCTAGAACCGAAAGTGTGGCTTCACATCATCAAGAATAGATTGATGCCCACAACCCACGATAGCACCATTTTAGTAGAGAGGGTTATGCTTCTCTACAACATCATGAAAGGGATGGAGATAAACATAGGGAGCATCATCAGAGAAGAGATCCTTTCATGTGGAAGAAAGAGAGCGGGGAAGCTTTTCTTTGGATCACTTATAACCCAATTGTGTTAGAGGGTGAAGATAGTTCCTGGAAAAGATGAGGAACGTCACTTTTTTCAGGCCCACCATTGACCTAGCTCTAATACAGAAGCTTCAACTGAACAATGCGCAAAGAAAGGACAAGGCTTCCACATCCCAAGCTATTCCACCTCCAGGGCTGAATCCTGTTTCACCTCCTCAGCACACTCTTGTTCCAGGGCCTAACACCATCATCAGAGGCCCTTGCATTTTCCTTCTGACAGCTAGACCGGATTGA

mRNA sequence

ATGGACGCCTCTCCTGCACCTCCTACCTCCACACCTGTCAAACCGAAGATCAAATCGCCTAAAGCTCCATCACCAAAGAATCTGTTCCCTAAAGTCATCAAGGATGTTAATTTCCAGGAGAGAATGGAGATTGTGAGAAAAAGAGACTTCTTGAACGAGAAGGGATTCTCAAACAGAGTAGGGACTTTGTCAGACTTTGAGGCCATGGTGCCTCTAGTTCGAGAATTTTATGCTGGATTGAGGGAGGAGAGCATGAGCATGGCGGTGGTGAGAGGTAGAATAGTCAGTTTCTCTTCGGTTGATATCAACAAGGTGTACCAGATTAAGGCACCTTTGCATCCAAGAGGCAATGATGCAATCAAGAACCCCTCGACCAAACAGTTGAAAGAAGCATTGAAGATGGTGGTCAACAAGGGATTTCAGTGGAAGGAGCCCACCATTGACCTAGCTCTAATACAGAAGCTTCAACTGAACAATGCGCAAAGAAAGGACAAGGCTTCCACATCCCAAGCTATTCCACCTCCAGGGCTGAATCCTGTTTCACCTCCTCAGCACACTCTTGTTCCAGGGCCTAACACCATCATCAGAGGCCCTTGCATTTTCCTTCTGACAGCTAGACCGGATTGA

Coding sequence (CDS)

ATGGACGCCTCTCCTGCACCTCCTACCTCCACACCTGTCAAACCGAAGATCAAATCGCCTAAAGCTCCATCACCAAAGAATCTGTTCCCTAAAGTCATCAAGGATGTTAATTTCCAGGAGAGAATGGAGATTGTGAGAAAAAGAGACTTCTTGAACGAGAAGGGATTCTCAAACAGAGTAGGGACTTTGTCAGACTTTGAGGCCATGGTGCCTCTAGTTCGAGAATTTTATGCTGGATTGAGGGAGGAGAGCATGAGCATGGCGGTGGTGAGAGGTAGAATAGTCAGTTTCTCTTCGGTTGATATCAACAAGGTGTACCAGATTAAGGCACCTTTGCATCCAAGAGGCAATGATGCAATCAAGAACCCCTCGACCAAACAGTTGAAAGAAGCATTGAAGATGGTGGTCAACAAGGGATTTCAGTGGAAGGAGCCCACCATTGACCTAGCTCTAATACAGAAGCTTCAACTGAACAATGCGCAAAGAAAGGACAAGGCTTCCACATCCCAAGCTATTCCACCTCCAGGGCTGAATCCTGTTTCACCTCCTCAGCACACTCTTGTTCCAGGGCCTAACACCATCATCAGAGGCCCTTGCATTTTCCTTCTGACAGCTAGACCGGATTGA

Protein sequence

MDASPAPPTSTPVKPKIKSPKAPSPKNLFPKVIKDVNFQERMEIVRKRDFLNEKGFSNRVGTLSDFEAMVPLVREFYAGLREESMSMAVVRGRIVSFSSVDINKVYQIKAPLHPRGNDAIKNPSTKQLKEALKMVVNKGFQWKEPTIDLALIQKLQLNNAQRKDKASTSQAIPPPGLNPVSPPQHTLVPGPNTIIRGPCIFLLTARPD

Homology

[Close]

BLAST of Spg024490 vs. NCBI nr
Match: XP_038888747.1 (vicilin-like seed storage protein At2g18540 [Benincasa hispida])

HSP 1 Score: 57.0 bits (136), Expect = 2.3e-04
Identity = 28/92 (30.43%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 67  EAMVPLVREFYAGLREESMSMAVVRGRIVSFSSVDINKVYQIKAPLHPRGNDAIKNPSTK 126
           + M+ +VR FY G   ++    +++G  V FS+ DIN++Y++K  L   GN  I +P   
Sbjct: 196 DMMMEMVRAFYHGRLHDTKDAVIMKGWTVPFSARDINELYKMKDILDAPGNKIIDDPEEA 255

Query: 127 QLKEALKMVVNKGFQWKEPTIDLALIQKLQLN 159
            +++ L++++  G QW   ++ L +I+ L  N
Sbjct: 256 HMEDTLRVLIQSGTQW---SVSLKVIKTLASN 284

The following BLAST results are available for this feature:

BLAST of Spg024490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888747.1	2.3e-04	30.43	vicilin-like seed storage protein At2g18540 [Benincasa hispida]	[more]

BLAST of Spg024490 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg024490 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg024490 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..190
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg024490.1	Spg024490.1	mRNA