Spg024400 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg024400
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase domain-containing protein
Location	scaffold9: 23712150 .. 23715748 (+)
RNA-Seq Expression	Spg024400
Synteny	Spg024400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGAGACGCATGACAGAATCTGCTCAACTTGAAATCGCCACTATAGAAAATCTGATGCTTGGCAAATTCATCTCTCCTTCTCAGCAACTAAACGAAACATCCAGTCCTAATGTGATGTCTGTTATGATGACTGATGCAGGAACTAGTAAAGAACGAATGGCTGAAGTTGAGAAGAAAAACAGCATGTTATTGAAGATGGTTGAAGAGAAAGACCAAGAAATCGTCTCTCTTAGGAACCAGATGGAAAGTCGGGATGTTGCTGAATCGAGTCAAACCCCTGCCATCAAAGACAAGGGAAAGATTATTGCACAAGATCAATCACAACTCTCCACTTCTATTGCTTCACTGTCTGTACAACAGCTCCAGGATATGATCATGAATTCCATCATAGCTCAATATGGTGGACCGACTCAGAATTCTCTCTTGTATTCCAAGTCGTATACCAAAAGAATCGATAATCTGAGAATGCCTAATGGATACCAACCACCGAAGTTTCAACAAATCGACGGGAAGGGTAATCCCAAGAAGCACGTTGCTCATTTCATCGAGATATGTGAAAATGTTGGTACTAGAGGAGACCTACTAGTCAAGCAGTTCATACGAACACTGAAGGAAAATGCTTTCGACTGGTATACCGACCTTGAGCCTGAGACTATCGATAGTTGGGAACAACTTGAGAAGGAGTTCCTTAACCGCTTCTACAGCACAAGACGAACCGTCAGTATGACGGAGCTCACTAGCGCTAAACAACGGAAAGGCGAGCCGGTTGTTGACTACATCAACCGTTAGAGAGCTTTGAGCCTAGATTGCAAGGACTGACTCACCCAAGAATCTGCAGTCGAGATGTGCATCCAAGGGATACATTGGGGACTCCTCTATATCCTGCAAGGAATAAAGCCCCGCACTTTCGAGGAGTTGGCAACCCGCGCTCATGACATGGAATGCATTGGGGACTCCTCTATATCCTGTAAGGAATAAAGCCCCACACTTTCGAGGAGTTGGCAACCCGCGCTCATGACATGGAATTGAGCATTGCTACTAGAGGGAACAAAGATCCTTTTGTCCCCGATGGCAAGACAGAAAAGAAAGAAGTTAAGAATACTGAGAAAACTACCAAAAGCACTACGAAAGAGTCAATGGTAGTCAATGTAGCTCCTTTCAAGTTTTCTTCAAAAAGGAAAAGAAAAGAAGATAGAGAAACAACAAGAGGGAGGTGAGAGACGTCGTCTGACCCTAAAAGAAAGGCAAGAGAAAGTTTACCCTTTTCCAGATTCTGACATTTCAGATTTGTTAAAACAACTCCTGGAAAAACAACTTATTAAACTACCAGAATGTAAGCGACCAGAAGAGATGGGGAGAGTTAATGATCCCAACTACTGCAAGTATCACCGAGTCATCAGCCACCCGATGGAGAAGTGCTTCGTTCTGAAGGAGCTAATTTTGAAGTTAGCTAAAGAAAAGAAGATTGAGTTAGATCTTGATGAGGTAGCTCAATCAAATCATGCGACGATAGCAACAAATCTGAACAACCGAGTAGCTCCAAGCCCGGTTCATGATTTAGTAGCAAGTCTGATCCAGTTCGGGACATTAGAGCCAATTGTTATTTGGCATCAGCAAGAATCTTCAAGTGACATCTTCCAAGACCAACTTGAGTCTGTTGAAAATGAAGACGAAGGATGGACTTTGGTAACTCGTCAAAAGAAGCAAAAGAAACATTTCGTTCAAAGAGAGCTTCACATGTTCCAAAACTACAGAAGAAAGAACATGTCACAAAAGCAGAAGAGAAAGATAAAAGGTTCGAGAAAGCCTAAACTAGTTGTCGAAGAGAATCAAGATTTTGTTCTGTCTCGACATTCAAAAACCCTTAAAGATTTCTTCCCAAAGAACTTTCTTAATGACGATCATGAGGACATCCCTGAGATAGTCGCATGTCATGCTGTCAATGCATTCGAAGAAGGCGATTCTTCCTCAAGTCCATCTCAAATGATGACAAGGCCAGAAGATTCGCCTTCATTCACAATAGATGATTTGTTGTCACTTCCTCAAGCAACCAAAGATGCTATTGTTGAAACATTGAAAAGTTCTAACGTTTTAGACGTTCCAGACTTGCAAGAACACAAATGTGCCTCATGTTATATGTCCATTAGCTTCACAGATGAAGACTTGATGTTGGGATCGAAGCCTCATAATAGGCCCTTATTCGTCTCAGGATATATTCGAGAGCAAAAAGTTGGCCGAATTCTCATCGACGATGGATCTGCGGTGAATATAATGCCTAAGTCAACCATGACACAGATAAGAATTTCAATGGATGAACTATCAAACAGTAGGTTGGTTATTCAAGGCTTCAACCAAGGCGGCCAACGAGCAATCGACATGATCCATTTGGAGCTTGTTATTGGAGATTTGAAGGCCAATACTTTATTCCATATCATAGATTCCAAGACCACTTACAAGTTATTGTTAGGTCGTCCTTAGATTCATGGAAATGGAATAATATCTTCTACACTTCATCAGTGTTTCAAGTTCTATCAAGACGGTGTCAAGAAAGTTGAAGCCGACACTAATCCATTCTCAGAGGCAGAATCCCACTTTGCAGATGCAAAGTTTTATATGCAGAATGATAAAGCAGGGGAGATCATACCAGCTGAGATTCCTCTAATTGAAAGTCACAAAGTAGAGCATCCAAATAATGCGAAGAAGGAGTCAATTGAAGAGATAGATGCTTGTGAAGTTCAGACAAAGGAAGCACCTACCCATCCTACGAAATCAAAGGCTTCAAAGGAAGAGGCGTCGTCAAACGTCCCTATATTGCGCTACGTTCCTTTATCTCGGCGCAAGAAAGGGGAGTCACCATTCACAGAATGTTCAGGAATTTTCAAGGTTGGTGATGTGGAGATTCTAAAAGAAAATTTTATCACACCTTTGACAACAATTACCAAGCAAGAGATTCAGGAATCAAAGACTGATCGTACCGAAGTGACTTTGCCGGAAAGACGAACGAAGGCTGGATTTGACCCAAATGCATACAAACTCCTAGAAAAGGCAGGATACGACTTTACAACTCATACTGAGTTTAAAATTCTAAAAATCTTCGATGGGAGATTTGAGCTTTCTCCTACACAAAAGAAGCTCCAAAAAGAAGGTTATGCCATACCATCATCGAGAGTCGGACTAGGGTACAATCCCCCCGAGCCAGTTCGTATCACCAGAAAATGGAAAGTTGCAGATGCACATCACATCACATAACGATAGAAGAGATGAGCGATCAAGAAGATAAAAAGAACGATGATAGCCAGAAAATCTCTGTCTTTAATCGCATTAAAGCGCCGACTACTCGTCTTTCAGATCATCAGCGGCTGAAATATTCATCTTCAGAAAAGGAAGGTCAGAGCAAAACTTCTGCTCCTACTCGACGTTCAGTGTTTCATCGTTTGAGTGTGTCTACATCAAAGAAAGTAGATGAACCTTTGAGATCTGTGTTCGACCGCCTTCAAGCAACAAATGGCCAATGCAAGGGAAAGTTGAAAAGTCTTGAAACAAAAGAATTCGATGAAATGAATGACAACAACGGATTTTCAAGTATTGTTCCTTGA

mRNA sequence

ATGCTGAGACGCATGACAGAATCTGCTCAACTTGAAATCGCCACTATAGAAAATCTGATGCTTGGCAAATTCATCTCTCCTTCTCAGCAACTAAACGAAACATCCAGTCCTAATGTGATGTCTGTTATGATGACTGATGCAGGAACTAGTAAAGAACGAATGGCTGAAGTTGAGAAGAAAAACAGCATGTTATTGAAGATGGTTGAAGAGAAAGACCAAGAAATCGTCTCTCTTAGGAACCAGATGGAAAGTCGGGATGTTGCTGAATCGAAATCTTCAAGTGACATCTTCCAAGACCAACTTGAGTCTGTTGAAAATGAAGACGAAGGATGGACTTTGGTAACTCGTCAAAAGAAGCAAAAGAAACATTTCGTTCAAAGAGAGCTTCACATGTTCCAAAACTACAGAAGAAAGAACATGTCACAAAAGCAGAAGAGAAAGATAAAAGGTTCGAGAAAGCCTAAACTAGTTGTCGAAGAGAATCAAGATTTTGTTCTGTCTCGACATTCAAAAACCCTTAAAGATTTCTTCCCAAAGAACTTTCTTAATGACGATCATGAGGACATCCCTGAGATAGTCGCATATGCTTGTGAAGTTCAGACAAAGGAAGCACCTACCCATCCTACGAAATCAAAGGCTTCAAAGGAAGAGGCGTCGTCAAACGTCCCTATATTGCGCTACGTTCCTTTATCTCGGCGCAAGAAAGGGGAGTCACCATTCACAGAATGTTCAGGAATTTTCAAGGTTGGTGATGTGGAGATTCTAAAAGAAAATTTTATCACACCTTTGACAACAATTACCAAGCAAGAGATTCAGGAATCAAAGACTGATCGTACCGAAGTGACTTTGCCGGAAAGACGAACGAAGGCTGGATTTGACCCAAATGCATACAAACTCCTAGAAAAGGCAGGATACGACTTTACAACTCATACTGAATGCACATCACATCACATAACGATAGAAGAGATGAGCGATCAAGAAGATAAAAAGAACGATGATAGCCAGAAAATCTCTGTCTTTAATCGCATTAAAGCGCCGACTACTCGTCTTTCAGATCATCAGCGGCTGAAATATTCATCTTCAGAAAAGGAAGGTCAGAGCAAAACTTCTGCTCCTACTCGACGTTCAGTGTTTCATCGTTTGAGTGTGTCTACATCAAAGAAAGTAGATGAACCTTTGAGATCTGTGTTCGACCGCCTTCAAGCAACAAATGGCCAATGCAAGGGAAAGTTGAAAAGTCTTGAAACAAAAGAATTCGATGAAATGAATGACAACAACGGATTTTCAAGTATTGTTCCTTGA

Coding sequence (CDS)

ATGCTGAGACGCATGACAGAATCTGCTCAACTTGAAATCGCCACTATAGAAAATCTGATGCTTGGCAAATTCATCTCTCCTTCTCAGCAACTAAACGAAACATCCAGTCCTAATGTGATGTCTGTTATGATGACTGATGCAGGAACTAGTAAAGAACGAATGGCTGAAGTTGAGAAGAAAAACAGCATGTTATTGAAGATGGTTGAAGAGAAAGACCAAGAAATCGTCTCTCTTAGGAACCAGATGGAAAGTCGGGATGTTGCTGAATCGAAATCTTCAAGTGACATCTTCCAAGACCAACTTGAGTCTGTTGAAAATGAAGACGAAGGATGGACTTTGGTAACTCGTCAAAAGAAGCAAAAGAAACATTTCGTTCAAAGAGAGCTTCACATGTTCCAAAACTACAGAAGAAAGAACATGTCACAAAAGCAGAAGAGAAAGATAAAAGGTTCGAGAAAGCCTAAACTAGTTGTCGAAGAGAATCAAGATTTTGTTCTGTCTCGACATTCAAAAACCCTTAAAGATTTCTTCCCAAAGAACTTTCTTAATGACGATCATGAGGACATCCCTGAGATAGTCGCATATGCTTGTGAAGTTCAGACAAAGGAAGCACCTACCCATCCTACGAAATCAAAGGCTTCAAAGGAAGAGGCGTCGTCAAACGTCCCTATATTGCGCTACGTTCCTTTATCTCGGCGCAAGAAAGGGGAGTCACCATTCACAGAATGTTCAGGAATTTTCAAGGTTGGTGATGTGGAGATTCTAAAAGAAAATTTTATCACACCTTTGACAACAATTACCAAGCAAGAGATTCAGGAATCAAAGACTGATCGTACCGAAGTGACTTTGCCGGAAAGACGAACGAAGGCTGGATTTGACCCAAATGCATACAAACTCCTAGAAAAGGCAGGATACGACTTTACAACTCATACTGAATGCACATCACATCACATAACGATAGAAGAGATGAGCGATCAAGAAGATAAAAAGAACGATGATAGCCAGAAAATCTCTGTCTTTAATCGCATTAAAGCGCCGACTACTCGTCTTTCAGATCATCAGCGGCTGAAATATTCATCTTCAGAAAAGGAAGGTCAGAGCAAAACTTCTGCTCCTACTCGACGTTCAGTGTTTCATCGTTTGAGTGTGTCTACATCAAAGAAAGTAGATGAACCTTTGAGATCTGTGTTCGACCGCCTTCAAGCAACAAATGGCCAATGCAAGGGAAAGTTGAAAAGTCTTGAAACAAAAGAATTCGATGAAATGAATGACAACAACGGATTTTCAAGTATTGTTCCTTGA

Protein sequence

MLRRMTESAQLEIATIENLMLGKFISPSQQLNETSSPNVMSVMMTDAGTSKERMAEVEKKNSMLLKMVEEKDQEIVSLRNQMESRDVAESKSSSDIFQDQLESVENEDEGWTLVTRQKKQKKHFVQRELHMFQNYRRKNMSQKQKRKIKGSRKPKLVVEENQDFVLSRHSKTLKDFFPKNFLNDDHEDIPEIVAYACEVQTKEAPTHPTKSKASKEEASSNVPILRYVPLSRRKKGESPFTECSGIFKVGDVEILKENFITPLTTITKQEIQESKTDRTEVTLPERRTKAGFDPNAYKLLEKAGYDFTTHTECTSHHITIEEMSDQEDKKNDDSQKISVFNRIKAPTTRLSDHQRLKYSSSEKEGQSKTSAPTRRSVFHRLSVSTSKKVDEPLRSVFDRLQATNGQCKGKLKSLETKEFDEMNDNNGFSSIVP

Homology

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BLAST of Spg024400 vs. NCBI nr
Match: KAA0061113.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 166.8 bits (421), Expect = 4.2e-37
Identity = 151/500 (30.20%), Postives = 207/500 (41.40%), Query Frame = 0


Query: 75  IVSLRNQMESRDVAESKSSSDIFQDQLESVENEDEGWTLVTRQKKQKKHFVQRELHMFQN 134
           I+ L  + + +   E + + +  Q++   +E +DEGWT+VTR+KK+K   +Q+E  ++ N
Sbjct: 445 ILRLAREKKIKLDLEEEVTPEDSQEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYIN 504

Query: 135 YRRKNMSQKQKRKIKGSRKPKLVVEENQDFVLSRHSKTLKDFFPKNFLNDDHEDIPEIVA 194
           YRR N +QK K+K K +RK KLV E+++DF  ++   TL DFFP  FL D  ++ P +VA
Sbjct: 505 YRRGNKTQKNKKK-KKTRKLKLVHEKDKDFPRTQRVVTLADFFPTRFLGDHQDENPGVVA 564

Query: 195 YAC--------------------------------------------------------- 254
            A                                                          
Sbjct: 565 SASSSSAPIATYESTPYCMSIDFSDEDLLLGSKLHNRPLYVSGYVQEQRVERILVDNGSA 624

Query: 255 -------------------------------------------------EVQTKEAPT-- 314
                                                            EV + E P   
Sbjct: 625 VNIMPKSTMRQLGILMEELSNSKLVIQGFNQGSQRVIDAKFYLKNDGSPEVVSVEVPLVN 684

Query: 315 ----------------------HPTKSKAS---------KEEASSNVPILRYVPLSRRKK 374
                                 H  KS+AS          +E +SN PILRYVPLSRRKK
Sbjct: 685 KEDNLQLKSLASRESHKSTGTFHSGKSEASTSTAKSVIVMDEKTSNPPILRYVPLSRRKK 744

Query: 375 GESPFTECSGIFKVGDVEILKENFITPLTTITKQEIQESKTDRTEVTLPERRTKAGFDPN 385
           GESPF E     KVGD+E+LKE+F TPLT ITKQEI   K D  E +LP+RRTK GFDP 
Sbjct: 745 GESPFVEFPQGLKVGDIEVLKESFTTPLTKITKQEI---KIDLIEASLPQRRTKDGFDPK 804

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BLAST of Spg024400 vs. NCBI nr
Match: TYK05005.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 157.5 bits (397), Expect = 2.5e-34
Identity = 105/262 (40.08%), Postives = 132/262 (50.38%), Query Frame = 0


Query: 190 PEIVAYACEVQTKEAPTHPTKSKASKEEASSNVPILRYVPLSRRKKGESPFTECSGIFKV 249
           P I       +  EA T   KS    +E +SN  ILRYVPLSRRKKGESPF E     KV
Sbjct: 667 PHISIGTFHSEKSEASTSTAKSVILMDEKTSNPSILRYVPLSRRKKGESPFVESPQGLKV 726

Query: 250 GDVEILKENFITPLTTITKQEIQESKTDRTEVTLPERRTKAGFDPNAYKLLEKAGYDFTT 309
           GD+E+LKE+F TPLT ITKQEI   K D TE +LP+RRTK  FDP AYKL+ KAGYDFTT
Sbjct: 727 GDIEVLKESFTTPLTKITKQEI---KIDLTEASLPQRRTKDEFDPKAYKLMAKAGYDFTT 786

Query: 310 HTE---------------------------------------------------CTSHHI 369
           HTE                                                     S+HI
Sbjct: 787 HTEFKSLKIHEQPKLSSTQKKLLREGHAIPMSRKGLGYKLPEPIRITRKGKEKMVDSNHI 846

Query: 370 TIEEMSDQEDKKNDDSQKISVFNRIKAPTTRLSDHQRLKYSSSEKEGQSKTSAPTRRSVF 401
           T++E+   ++K+  DSQ+ S F+RI     R    +RL  + +E++    TS   RRS F
Sbjct: 847 TVKEVDSMKEKEG-DSQRTSAFDRISPHVARAPVFERLSVTEAERKDHQSTSNLDRRSAF 906

[Close]

BLAST of Spg024400 vs. NCBI nr
Match: TYK05005.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 5.7e-10
Identity = 53/136 (38.97%), Postives = 82/136 (60.29%), Query Frame = 0


Query: 98  QDQLESVENEDEGWTLVTRQKKQKKHFVQRELHMFQNYRRKNMSQKQKRKIKGSRKPKLV 157
           Q++   +E +DE WT+VTR+KK+K   +Q+E   ++NYRR N +QK K+K K +RK KL+
Sbjct: 364 QEKERLIEEDDERWTIVTRRKKRKSTPIQKEHRFYRNYRRWNKAQKNKKK-KKTRKLKLM 423

Query: 158 VEENQDFVLSRHSKTLKDFFPKNFLNDDHEDIPEIVAYACEVQTKEAPTHPTKS----KA 217
            +E++DF  ++   TL DFFP  FL D  ++ P +VA    +   E  + P +S    K 
Sbjct: 424 HKEDKDFPRTQRLITLADFFPTRFLGDHQDENPGVVA-CHAINATEEESIPLRSLEEEKV 483

Query: 218 SKEEASSNVPILRYVP 230
           SK+ +  NV  L  +P
Sbjct: 484 SKDLSRFNVDDLLSLP 497

HSP 2 Score: 155.6 bits (392), Expect = 9.7e-34
Identity = 103/252 (40.87%), Postives = 129/252 (51.19%), Query Frame = 0


Query: 200 QTKEAPTHPTKSKASKEEASSNVPILRYVPLSRRKKGESPFTECSGIFKVGDVEILKENF 259
           +  EA T   KS    +E +SN PIL YVPLSRRKKGESPF E S   KVGD+E+LKE+F
Sbjct: 235 EKSEASTSTAKSVILMDEKTSNPPILCYVPLSRRKKGESPFVESSQGLKVGDIEVLKESF 294

Query: 260 ITPLTTITKQEIQESKTDRTEVTLPERRTKAGFDPNAYKLLEKAGYDFTTHTE------- 319
            TPLT ITKQEI   K D TE +LP+RRTK  FDP AYKL+ KAGYDFTTHTE       
Sbjct: 295 TTPLTKITKQEI---KIDLTEASLPKRRTKDEFDPKAYKLMAKAGYDFTTHTEFKSLKIH 354

Query: 320 --------------------------------------------CTSHHITIEEMSDQED 379
                                                         S+HI ++E+   E+
Sbjct: 355 EQPKISSTQKKLLREGHAIPMSRKGLGYKLPEPIRITRKGKEKMVDSNHIIVKEVDSMEE 414

Query: 380 KKNDDSQKISVFNRIKAPTTRLSDHQRLKYSSSEKEGQSKTSAPTRRSVFHRLSVSTSKK 401
           K+  DSQ+ S F+RI     R    +RL    +E++    TS   R+S F RLS++  K 
Sbjct: 415 KEG-DSQRTSAFDRISPHVARAPVFERLSVIEAERKDHQSTSNLDRQSAFERLSITKKKN 474

[Close]

BLAST of Spg024400 vs. NCBI nr
Match: KAA0051585.1 (uncharacterized protein E6C27_scaffold174G001280 [Cucumis melo var. makuwa])

HSP 1 Score: 155.2 bits (391), Expect = 1.3e-33
Identity = 110/275 (40.00%), Postives = 139/275 (50.55%), Query Frame = 0


Query: 203 EAPTHPTKSKASKEEASSNVPILRYVPLSRRKKGESPFTECSGIFKVGDVEILKENFITP 262
           EA T+  KS    +E +SN PILRYVPLSRRKKGESPF E     KVG++E+LKE+F TP
Sbjct: 313 EASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQGLKVGEIEVLKESFTTP 372

Query: 263 LTTITKQEIQESKTDRTEVTLPERRTKAGFDPNAYKLLEKAGYDFTTHTE---------- 322
           LT ITKQEI   K D TE +LP+RRTK GFDP AYKL+ KAGYDFTTHTE          
Sbjct: 373 LTKITKQEI---KIDLTEASLPQRRTKDGFDPKAYKLMAKAGYDFTTHTEFKSLKIYEQP 432

Query: 323 -----------------------------------------CTSHHITIEEMSDQEDKKN 382
                                                      S+HIT++E +D  ++K 
Sbjct: 433 KLSSTQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITLKE-ADSMEEKE 492

Query: 383 DDSQKISVFNRI-----KAPT--------------------TRLSDHQRLKYSSSEKEGQ 402
            DSQ+ S F+RI     +AP                      R S  QRL  +  E++G 
Sbjct: 493 GDSQRTSAFDRISPHVARAPVFEKLSMTEAERKDHQSTSNLDRRSAFQRLTITFKEEKGI 552

[Close]

BLAST of Spg024400 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 2.4e-32
Identity = 109/286 (38.11%), Postives = 139/286 (48.60%), Query Frame = 0


Query: 203  EAPTHPTKSKASKEEASSNVPILRYVPLSRRKKGESPFTECSGIFKVGDVEILKENFITP 262
            EA T  TK    K+E ++N P+LRYVPLSRRKKGESPF E     KVGD+EI+KE+F TP
Sbjct: 933  EAYTSSTKGMILKDENAANTPVLRYVPLSRRKKGESPFMESPKGLKVGDIEIIKESFTTP 992

Query: 263  LTTITKQEIQESKTDRTEVTLPERRTKAGFDPNAYKLLEKAGYDFTTHTECTS------- 322
            LT I KQE+   K D  E  LP+RRTK GFDP AYKL+ KAGYDFT HTE  S       
Sbjct: 993  LTKIAKQEV---KVDLVEANLPQRRTKDGFDPKAYKLMAKAGYDFTAHTEFKSLEIHDRP 1052

Query: 323  --------------------------------------------HHITIEEMSDQEDKKN 382
                                                        +HITIEE  D  D K 
Sbjct: 1053 ELSSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHITIEE-DDNTDVKE 1112

Query: 383  DDSQKISVFNRIKAPTTRLSDHQRLKYSSSEKEGQSKTSAPTRRSVFHRLSV------ST 432
             D+Q+ISVF+RI+    R    +RL  + +E+E      +  R SVF RL+       ST
Sbjct: 1113 GDNQRISVFDRIRPSVARPVVFERLSMTEAERERLQSVPSLERHSVFRRLTTTPIKEEST 1172

[Close]

BLAST of Spg024400 vs. ExPASy TrEMBL
Match: A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.0e-37
Identity = 151/500 (30.20%), Postives = 207/500 (41.40%), Query Frame = 0


Query: 75  IVSLRNQMESRDVAESKSSSDIFQDQLESVENEDEGWTLVTRQKKQKKHFVQRELHMFQN 134
           I+ L  + + +   E + + +  Q++   +E +DEGWT+VTR+KK+K   +Q+E  ++ N
Sbjct: 445 ILRLAREKKIKLDLEEEVTPEDSQEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYIN 504

Query: 135 YRRKNMSQKQKRKIKGSRKPKLVVEENQDFVLSRHSKTLKDFFPKNFLNDDHEDIPEIVA 194
           YRR N +QK K+K K +RK KLV E+++DF  ++   TL DFFP  FL D  ++ P +VA
Sbjct: 505 YRRGNKTQKNKKK-KKTRKLKLVHEKDKDFPRTQRVVTLADFFPTRFLGDHQDENPGVVA 564

Query: 195 YAC--------------------------------------------------------- 254
            A                                                          
Sbjct: 565 SASSSSAPIATYESTPYCMSIDFSDEDLLLGSKLHNRPLYVSGYVQEQRVERILVDNGSA 624

Query: 255 -------------------------------------------------EVQTKEAPT-- 314
                                                            EV + E P   
Sbjct: 625 VNIMPKSTMRQLGILMEELSNSKLVIQGFNQGSQRVIDAKFYLKNDGSPEVVSVEVPLVN 684

Query: 315 ----------------------HPTKSKAS---------KEEASSNVPILRYVPLSRRKK 374
                                 H  KS+AS          +E +SN PILRYVPLSRRKK
Sbjct: 685 KEDNLQLKSLASRESHKSTGTFHSGKSEASTSTAKSVIVMDEKTSNPPILRYVPLSRRKK 744

Query: 375 GESPFTECSGIFKVGDVEILKENFITPLTTITKQEIQESKTDRTEVTLPERRTKAGFDPN 385
           GESPF E     KVGD+E+LKE+F TPLT ITKQEI   K D  E +LP+RRTK GFDP 
Sbjct: 745 GESPFVEFPQGLKVGDIEVLKESFTTPLTKITKQEI---KIDLIEASLPQRRTKDGFDPK 804

[Close]

BLAST of Spg024400 vs. ExPASy TrEMBL
Match: A0A5D3C0W6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002360 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-34
Identity = 105/262 (40.08%), Postives = 132/262 (50.38%), Query Frame = 0


Query: 190 PEIVAYACEVQTKEAPTHPTKSKASKEEASSNVPILRYVPLSRRKKGESPFTECSGIFKV 249
           P I       +  EA T   KS    +E +SN  ILRYVPLSRRKKGESPF E     KV
Sbjct: 667 PHISIGTFHSEKSEASTSTAKSVILMDEKTSNPSILRYVPLSRRKKGESPFVESPQGLKV 726

Query: 250 GDVEILKENFITPLTTITKQEIQESKTDRTEVTLPERRTKAGFDPNAYKLLEKAGYDFTT 309
           GD+E+LKE+F TPLT ITKQEI   K D TE +LP+RRTK  FDP AYKL+ KAGYDFTT
Sbjct: 727 GDIEVLKESFTTPLTKITKQEI---KIDLTEASLPQRRTKDEFDPKAYKLMAKAGYDFTT 786

Query: 310 HTE---------------------------------------------------CTSHHI 369
           HTE                                                     S+HI
Sbjct: 787 HTEFKSLKIHEQPKLSSTQKKLLREGHAIPMSRKGLGYKLPEPIRITRKGKEKMVDSNHI 846

Query: 370 TIEEMSDQEDKKNDDSQKISVFNRIKAPTTRLSDHQRLKYSSSEKEGQSKTSAPTRRSVF 401
           T++E+   ++K+  DSQ+ S F+RI     R    +RL  + +E++    TS   RRS F
Sbjct: 847 TVKEVDSMKEKEG-DSQRTSAFDRISPHVARAPVFERLSVTEAERKDHQSTSNLDRRSAF 906

[Close]

BLAST of Spg024400 vs. ExPASy TrEMBL
Match: A0A5D3C0W6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002360 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.8e-10
Identity = 53/136 (38.97%), Postives = 82/136 (60.29%), Query Frame = 0


Query: 98  QDQLESVENEDEGWTLVTRQKKQKKHFVQRELHMFQNYRRKNMSQKQKRKIKGSRKPKLV 157
           Q++   +E +DE WT+VTR+KK+K   +Q+E   ++NYRR N +QK K+K K +RK KL+
Sbjct: 364 QEKERLIEEDDERWTIVTRRKKRKSTPIQKEHRFYRNYRRWNKAQKNKKK-KKTRKLKLM 423

Query: 158 VEENQDFVLSRHSKTLKDFFPKNFLNDDHEDIPEIVAYACEVQTKEAPTHPTKS----KA 217
            +E++DF  ++   TL DFFP  FL D  ++ P +VA    +   E  + P +S    K 
Sbjct: 424 HKEDKDFPRTQRLITLADFFPTRFLGDHQDENPGVVA-CHAINATEEESIPLRSLEEEKV 483

Query: 218 SKEEASSNVPILRYVP 230
           SK+ +  NV  L  +P
Sbjct: 484 SKDLSRFNVDDLLSLP 497

HSP 2 Score: 155.6 bits (392), Expect = 4.7e-34
Identity = 103/252 (40.87%), Postives = 129/252 (51.19%), Query Frame = 0


Query: 200 QTKEAPTHPTKSKASKEEASSNVPILRYVPLSRRKKGESPFTECSGIFKVGDVEILKENF 259
           +  EA T   KS    +E +SN PIL YVPLSRRKKGESPF E S   KVGD+E+LKE+F
Sbjct: 235 EKSEASTSTAKSVILMDEKTSNPPILCYVPLSRRKKGESPFVESSQGLKVGDIEVLKESF 294

Query: 260 ITPLTTITKQEIQESKTDRTEVTLPERRTKAGFDPNAYKLLEKAGYDFTTHTE------- 319
            TPLT ITKQEI   K D TE +LP+RRTK  FDP AYKL+ KAGYDFTTHTE       
Sbjct: 295 TTPLTKITKQEI---KIDLTEASLPKRRTKDEFDPKAYKLMAKAGYDFTTHTEFKSLKIH 354

Query: 320 --------------------------------------------CTSHHITIEEMSDQED 379
                                                         S+HI ++E+   E+
Sbjct: 355 EQPKISSTQKKLLREGHAIPMSRKGLGYKLPEPIRITRKGKEKMVDSNHIIVKEVDSMEE 414

Query: 380 KKNDDSQKISVFNRIKAPTTRLSDHQRLKYSSSEKEGQSKTSAPTRRSVFHRLSVSTSKK 401
           K+  DSQ+ S F+RI     R    +RL    +E++    TS   R+S F RLS++  K 
Sbjct: 415 KEG-DSQRTSAFDRISPHVARAPVFERLSVIEAERKDHQSTSNLDRQSAFERLSITKKKN 474

[Close]

BLAST of Spg024400 vs. ExPASy TrEMBL
Match: A0A5A7UD46 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G001280 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 6.1e-34
Identity = 110/275 (40.00%), Postives = 139/275 (50.55%), Query Frame = 0


Query: 203 EAPTHPTKSKASKEEASSNVPILRYVPLSRRKKGESPFTECSGIFKVGDVEILKENFITP 262
           EA T+  KS    +E +SN PILRYVPLSRRKKGESPF E     KVG++E+LKE+F TP
Sbjct: 313 EASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQGLKVGEIEVLKESFTTP 372

Query: 263 LTTITKQEIQESKTDRTEVTLPERRTKAGFDPNAYKLLEKAGYDFTTHTE---------- 322
           LT ITKQEI   K D TE +LP+RRTK GFDP AYKL+ KAGYDFTTHTE          
Sbjct: 373 LTKITKQEI---KIDLTEASLPQRRTKDGFDPKAYKLMAKAGYDFTTHTEFKSLKIYEQP 432

Query: 323 -----------------------------------------CTSHHITIEEMSDQEDKKN 382
                                                      S+HIT++E +D  ++K 
Sbjct: 433 KLSSTQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITLKE-ADSMEEKE 492

Query: 383 DDSQKISVFNRI-----KAPT--------------------TRLSDHQRLKYSSSEKEGQ 402
            DSQ+ S F+RI     +AP                      R S  QRL  +  E++G 
Sbjct: 493 GDSQRTSAFDRISPHVARAPVFEKLSMTEAERKDHQSTSNLDRRSAFQRLTITFKEEKGI 552

[Close]

BLAST of Spg024400 vs. ExPASy TrEMBL
Match: A0A5A7SND9 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold506G00160 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.5e-32
Identity = 93/193 (48.19%), Postives = 111/193 (57.51%), Query Frame = 0


Query: 213 ASKEEASSNVPILRYVPLSRRKKGESPFTECSGIFKVGDVEILKENFITPLTTITKQEIQ 272
           A+ ++  SN P+LRY+ LSRRKKGESPFTECS    V + EILKENF  PLT I K E  
Sbjct: 295 ATLQKEVSNPPVLRYIFLSRRKKGESPFTECSKNLTVKNTEILKENFTAPLTKIEKGEAN 354

Query: 273 ESKTDRTEVTLPERRTKAGFDPNAYKLLEKAGYDFTTHTECTSH---------------- 332
           + +    E  LPERRT  GFDP AYKL+ KAGYDFTT TE  S                 
Sbjct: 355 KIEKKDLEAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSSSEQVRITGKGKAKVAN 414

Query: 333 --HITIEEMSDQEDKKNDDSQKISVFNRIKAPTTRLSDHQRLKYSSSEKEGQSKTSAPTR 388
             HIT+EE  D E+ K D SQ+ SVF+RI     R S  QR+  S ++   Q  T + TR
Sbjct: 415 TCHITVEESKDSEEGKKDRSQRSSVFDRIAFSAIRPSVFQRVSTSIAKDSNQVSTCSSTR 474

The following BLAST results are available for this feature:

BLAST of Spg024400 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061113.1	4.2e-37	30.20	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gyp...	[more]
TYK05005.1	2.5e-34	40.08	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK05005.1	5.7e-10	38.97	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051585.1	1.3e-33	40.00	uncharacterized protein E6C27_scaffold174G001280 [Cucumis melo var. makuwa]	[more]
XP_031735972.1	2.4e-32	38.11	uncharacterized protein LOC116401693 [Cucumis sativus]	[more]

Pages

BLAST of Spg024400 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg024400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BY54	2.0e-37	30.20	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3C0W6	1.2e-34	40.08	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3C0W6	2.8e-10	38.97	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UD46	6.1e-34	40.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SND9	1.5e-32	48.19	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]

BLAST of Spg024400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 54..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 350..378
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 363..378

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg024400.1	Spg024400.1	mRNA