Spg024398 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg024398
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold4: 23169282 .. 23171866 (+)
RNA-Seq ExpressionSpg024398
SyntenySpg024398
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGCCCAGGTCAAGGCTATTCATAGCATGATGATGGGCATGACCATGAACAATCAAGCCAACATAGCCCTTGCCAATGCTATTTCTTCTCCCTGTTGTGAAATTTGTGGTGAGGAACACATCGCTGATAATTGCCCACTAAACCCTACATCTGTCTTTTATGTAGGTCAAAACGAGAGCCAGAACCAGAATAGATGAAATCCTTATTCGGCCACGTACAACCCAGGTTGGAGATAACATCCAAACTTCTCTTGGGGAGGACAAGCCGGGTCAAGTAATTCCAACACAAATCAGTTCGGAAAGCCGCCTACACAACAACAGTCGTAGAAGAACTTCCAACAGAATCCAGTGCAAAGTCAAAAGTCAAACCTAGAGACTCTTATGAAGGAGTACATGGCAAGAAACGATGCTGCAGTAAGGAATTTGGAGGTTCAGCTTGGACAAAATTGCTCAGGAGATTAAGAACCGACCACAGGGGACATTACCTAGCAAGACCGAGATCCCTCACACAGAAGGAAAGGAACAATGCAAGGCAGTGACTTTAAGAAGTGGATTAGAATACGATGGCAAAAGGTACCCAGTAAATCAAGAAGATGAAATCCCAAAAGAAGCTCGAGAAAAGATTTTTGAAAAGAAGTCAGACATTACCTCAGATACTATAGAGAATAAAGAAGAGAAGACCAAGGAGCATGAAGCCTTGGTAGGAAAAGAAGAAAAATCAAAGTTAGAGAAAAAAATAAGGGAATACGACCGCAAAACCCCAAAAATTTGTAATAGATCCAGCATACAGACCACCTCCTCCATACCCTCAGAGATTCAAACATGCTTTGCCGAATGTACAGTTCAAGAAGTTTTTAGATGTATTAAAGCAGTTACACATCAATATCCCGTCGGTATAAGAACTTGAAAAGTTGCCTACCTATGTGAAGTTCCTAAAAGATATTCTATCAAAGAAAAGAAGGTTGGGAGAATACGAAACTGTTGCACTCACTGAATGTTCCAGTGCACTGGTCAAGAATGAGATCCCTCCTAAGCTTAAAGACCCAGAAAGTTTCACCATTCCATGCTCCATTGGAGGCAGAGATGTAGGCAGAGCTTTGTGCGACTTAGGAGCAAGCATCAACTTAATGCCATACTCGGTTTTTAAACAATTAGGGATTGGTGAAGCACGACCAACAACTGTAACCTTACAGTTGGCGAACAGATCACTTACACATCCCATTGGAAAGATTGAAGACATATTGGTCAAGGTTGATAAGTTTGTTTTCCCTGCAGATTTCATCATTTTAGATTATGAAGCTGATAAGGACGTGCCAATCATCTTAGGACGACCGTTCCAAGCCACTGGCAGAGCCTTAATAGATGTACAAAAAGGAGAATTGACCATGAGGGTCAACGATCAACAAGTCACGTTTAATGTGATGATGGCAATGCAATATCTAGGATACCTTGAGAGATGTTCTATGATTGAAGAAGTTGACGAACTGTCTGTCTCTATTTTGCAGGAAACATTAAAGGGAGAACCACTGAAAGGAAACAATTTCGAAAAAGAGGAACTAGAAGGAAAAGGTAAAAAAGTGATTGAAGAAGTAGAAGTACCAGTCACAAATGATTCTACAGCAGCGAGGATAGAGGCATTAAGGGATTCATCAGACCAAGAAGAAGTCAGGCCATTACAACCACTACAAGAAAATACGTTTTCAGTGACAAGTTTGTAGTGACGCAACAAAAATAAGCCACTAAAGATGACTTTTAGCGACATCGTAAACCAAATGTCGCAATTACATATTTTCAGTGATGCGATAAAATTAGATGTCACTAATAGTTTCAGAGACGCGTAAACTCGCGCCACAAAAAGTTTTATTTTTAGCAACATATTTATCACGTTGCTAAAGGTTATGTTTGGTGTCACTAAATATTAGAATTTTTTTTCTTTTCAAATAAAATATTAGAATATTAAAATAAGCTAGGGATGGCGTGTAACGCCACAAAATTTCAGTTGAAGGTTAGTTTCTCAATCTACGAATTTGATTGAGCAAAAATTGTTAAGTGATTGAATCAAAAGCTCAATTTAAGAGTAAATTGAATTGAAAAAAAAAAGGATTTAATAGGGCTTGATGGCAATTTGGTAATTAACTCAATTTTTAGCCAAACCACAAACCCTAAGCTCATTTTATCATTATTTTTTTCTTTTCTCCCCTTTTTCCCTTCTCCTTCAGCTGTCACCTCCTTCCCCAATGGCCATCTTCTTCCTCTTCACGTTTTGGGCGGCGGTGCAGCGTTTCTCCAGCAAGTTTTCTTCTCTCGGTTCAAGCAAGTCGTCGGCCAGCTTGTGTCTCCATCTCCAGCGTCTTCTCTGGCGGCAGCAAGCTGCAACGCGCGTGCTCGATGGGTCTTCGCGGTCGTTAGCTCAATTGGAGGTCAGTTTCTGCGTCGGTTTTGTACCTCTCTTACTCGATCTTTCTTTCTTAATCGCTTTCTCCCTCACTCACGGTCTCTCCTCCCCTGTTTTTCGAGTTGTTTCTGAAGGGATAAAAGCCCTTGCGCAGCGAAAACGTACAGAACCTTTAACTCCGAATTAA

mRNA sequence

ATGCAAGCCCAGGTCAAGGCTATTCATAGCATGATGATGGGCATGACCATGAACAATCAAGCCAACATAGCCCTTGCCAATGCTATTTCTTCTCCCTGTTGTGAAATTTGTGGAATTTGGAGGTTCAGCTTGGACAAAATTGCTCAGGAGATTAAGAACCGACCACAGGGGACATTACCTAGCAAGACCGAGATCCCTCACACAGAAGGAAAGGAACAATGCAAGGCAGTGACTTTAAGAAGTGGATTAGAATACGATGGCAAAAGGTACCCAGTAAATCAAGAAGATGAAATCCCAAAAGAAGCTCGAGAAAAGATTTTTGAAAAGAAGTCAGACATTACCTCAGATACTATAGAGAATAAAGAAGAGAAGACCAAGGAGCATGAAGCCTTGGAAACATTAAAGGGAGAACCACTGAAAGGAAACAATTTCGAAAAAGAGGAACTAGAAGGAAAAGGTAAAAAAGTGATTGAAGAAGTAGAAGTACCAGTCACAAATGATTCTACAGCAGCGAGGATAGAGGCATTAAGGGATTCATCAGACCAAGAAGAAGTCAGGCCATTACAACCACTACAAGAAAATACGTTTTCAGTGACAACTGTCACCTCCTTCCCCAATGGCCATCTTCTTCCTCTTCACGTTTTGGGCGGCGGTGCAGCGTTTCTCCAGCAAGTTTTCTTCTCTCGGTTCAAGCAAGTCGTCGGCCAGCTTGTGTCTCCATCTCCAGCGTCTTCTCTGGCGGCAGCAAGCTGCAACGCGCGTGCTCGATGGGTCTTCGCGGTCGTTAGCTCAATTGGAGGGATAAAAGCCCTTGCGCAGCGAAAACGTACAGAACCTTTAACTCCGAATTAA

Coding sequence (CDS)

ATGCAAGCCCAGGTCAAGGCTATTCATAGCATGATGATGGGCATGACCATGAACAATCAAGCCAACATAGCCCTTGCCAATGCTATTTCTTCTCCCTGTTGTGAAATTTGTGGAATTTGGAGGTTCAGCTTGGACAAAATTGCTCAGGAGATTAAGAACCGACCACAGGGGACATTACCTAGCAAGACCGAGATCCCTCACACAGAAGGAAAGGAACAATGCAAGGCAGTGACTTTAAGAAGTGGATTAGAATACGATGGCAAAAGGTACCCAGTAAATCAAGAAGATGAAATCCCAAAAGAAGCTCGAGAAAAGATTTTTGAAAAGAAGTCAGACATTACCTCAGATACTATAGAGAATAAAGAAGAGAAGACCAAGGAGCATGAAGCCTTGGAAACATTAAAGGGAGAACCACTGAAAGGAAACAATTTCGAAAAAGAGGAACTAGAAGGAAAAGGTAAAAAAGTGATTGAAGAAGTAGAAGTACCAGTCACAAATGATTCTACAGCAGCGAGGATAGAGGCATTAAGGGATTCATCAGACCAAGAAGAAGTCAGGCCATTACAACCACTACAAGAAAATACGTTTTCAGTGACAACTGTCACCTCCTTCCCCAATGGCCATCTTCTTCCTCTTCACGTTTTGGGCGGCGGTGCAGCGTTTCTCCAGCAAGTTTTCTTCTCTCGGTTCAAGCAAGTCGTCGGCCAGCTTGTGTCTCCATCTCCAGCGTCTTCTCTGGCGGCAGCAAGCTGCAACGCGCGTGCTCGATGGGTCTTCGCGGTCGTTAGCTCAATTGGAGGGATAAAAGCCCTTGCGCAGCGAAAACGTACAGAACCTTTAACTCCGAATTAA

Protein sequence

MQAQVKAIHSMMMGMTMNNQANIALANAISSPCCEICGIWRFSLDKIAQEIKNRPQGTLPSKTEIPHTEGKEQCKAVTLRSGLEYDGKRYPVNQEDEIPKEAREKIFEKKSDITSDTIENKEEKTKEHEALETLKGEPLKGNNFEKEELEGKGKKVIEEVEVPVTNDSTAARIEALRDSSDQEEVRPLQPLQENTFSVTTVTSFPNGHLLPLHVLGGGAAFLQQVFFSRFKQVVGQLVSPSPASSLAAASCNARARWVFAVVSSIGGIKALAQRKRTEPLTPN
Homology
[Close]
BLAST of Spg024398 vs. NCBI nr
Match: XP_022159345.1 (uncharacterized protein LOC111025764 [Momordica charantia])

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-07
Identity = 31/48 (64.58%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 44  LDKIAQEIKNRPQGTLPSKTEIPHTEGKEQCKAVTLRSGLEYDGKRYP 92
           L ++A E+KNRPQG+ P  TE+P  EGKEQCKAVTLRSGL YD    P
Sbjct: 236 LGQLANELKNRPQGSFPXHTELPKREGKEQCKAVTLRSGLAYDEPTMP 283

[Close]
BLAST of Spg024398 vs. NCBI nr
Match: XP_022158408.1 (uncharacterized protein LOC111024897, partial [Momordica charantia])

HSP 1 Score: 66.6 bits (161), Expect = 3.9e-07
Identity = 37/82 (45.12%), Postives = 45/82 (54.88%), Query Frame = 0 

Query: 44  LDKIAQEIKNRPQGTLPSKTEIPHTEGKEQCKAVTLRSGLEYDGKRYPVNQEDEIPKEAR 103
           L  +A E+KNRPQG+ P  TE+P  EGKEQCKAVTLRSGL YDG   P         +  
Sbjct: 463 LGHLANELKNRPQGSFPGHTELPRREGKEQCKAVTLRSGLTYDGPTMPTTDVQIPSTKPT 522

Query: 104 EKIFEKKSDITSDTIENKEEKT 126
            KI E  +    + I    + T
Sbjct: 523 VKIPENPTTPEKENIRKGNKDT 544

[Close]
BLAST of Spg024398 vs. NCBI nr
Match: XP_030494994.1 (uncharacterized protein LOC115710785 [Cannabis sativa])

HSP 1 Score: 63.2 bits (152), Expect = 4.3e-06
Identity = 52/179 (29.05%), Postives = 88/179 (49.16%), Query Frame = 0 

Query: 3   AQVKAIHSMMMGMTMNNQANIALANAISSPCCEICGIWRFSLDKIAQEIKNRPQGTLPSK 62
           +Q  ++ S+M      N A  +L N             +  L K+A ++KNRPQGTLPS 
Sbjct: 100 SQTSSLESLMRDYMAKNDAAASLRNL------------KIQLGKLANDLKNRPQGTLPSD 159

Query: 63  TEIPHTEGKEQCKAVTLRSGLEYD---GKRYP--VNQEDEIPKEAREKIFEKKSDITSDT 122
           TE P  +GKE CKA+TLRSG   +   G   P  + +E E+ K+    + E  +D+T+  
Sbjct: 160 TENPRRDGKEHCKALTLRSGKILESATGSTEPSSIQKEGEMKKKPPISVAEIPTDVTASD 219

Query: 123 IENKEEKTKEHEALETLKGEPLKGNNFEKEELEGKGKKVIEEVEVPVTNDSTAARIEAL 177
             +  EK+ +       K  P     F+K++ +G+ ++ ++ ++    N S    +E +
Sbjct: 220 QHSAVEKSLQ-------KRPPPFPQQFKKQQDDGQFRRFLDVLKQLHINISLVEALEQM 259

[Close]
BLAST of Spg024398 vs. NCBI nr
Match: XP_030509259.1 (uncharacterized protein LOC115723937 [Cannabis sativa])

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-05
Identity = 50/160 (31.25%), Postives = 72/160 (45.00%), Query Frame = 0 

Query: 3   AQVKAIHSMMMGMTMNNQANIALANAISSPCCEICGIWRFSLDKIAQEIKNRPQGTLPSK 62
           +Q  ++ S+M      N A +  + A S    E+       L ++A ++KNRPQGTLPS 
Sbjct: 385 SQTSSLESLMRDYMAKNDA-VIQSQAASLRNLEV------QLGQLANDLKNRPQGTLPSD 444

Query: 63  TEIPHTEGKEQCKAVTLRSG-------------------LEYDGKRYPVNQEDEIPKE-- 122
           TE P  +GKE CKAVTLRSG                    E + K+ P     EIP+E  
Sbjct: 445 TENPRRDGKEHCKAVTLRSGKIIESNVAATGSKEPSSIQKEGEMKKKPATSNSEIPREIL 504

Query: 123 ------AREKIFEKKSDITSDTIENKEEKTKEHEALETLK 136
                 +  K+F K +   S T++    +      L+ LK
Sbjct: 505 TSNRRFSCRKVFAKATSTISSTVQEATRRWSIRRFLDVLK 537

[Close]
BLAST of Spg024398 vs. NCBI nr
Match: XP_022150317.1 (uncharacterized protein LOC111018514 [Momordica charantia])

HSP 1 Score: 60.8 bits (146), Expect = 2.1e-05
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 0 

Query: 44  LDKIAQEIKNRPQGTLPSKTEIPHTEGKEQCKAVTLRSGLEYDGKRYPV 93
           + + A ++K RPQG+ P  TE+   +G EQCKAVTLRSGL Y+G + PV
Sbjct: 277 MGQXANDLKARPQGSFPGHTEVXKRDGXEQCKAVTLRSGLSYEGPKMPV 325

[Close]
BLAST of Spg024398 vs. ExPASy TrEMBL
Match: A0A6J1DYG0 (uncharacterized protein LOC111025764 OS=Momordica charantia OX=3673 GN=LOC111025764 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.4e-08
Identity = 31/48 (64.58%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 44  LDKIAQEIKNRPQGTLPSKTEIPHTEGKEQCKAVTLRSGLEYDGKRYP 92
           L ++A E+KNRPQG+ P  TE+P  EGKEQCKAVTLRSGL YD    P
Sbjct: 236 LGQLANELKNRPQGSFPXHTELPKREGKEQCKAVTLRSGLAYDEPTMP 283

[Close]
BLAST of Spg024398 vs. ExPASy TrEMBL
Match: A0A6J1DW02 (uncharacterized protein LOC111024897 OS=Momordica charantia OX=3673 GN=LOC111024897 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-07
Identity = 37/82 (45.12%), Postives = 45/82 (54.88%), Query Frame = 0 

Query: 44  LDKIAQEIKNRPQGTLPSKTEIPHTEGKEQCKAVTLRSGLEYDGKRYPVNQEDEIPKEAR 103
           L  +A E+KNRPQG+ P  TE+P  EGKEQCKAVTLRSGL YDG   P         +  
Sbjct: 463 LGHLANELKNRPQGSFPGHTELPRREGKEQCKAVTLRSGLTYDGPTMPTTDVQIPSTKPT 522

Query: 104 EKIFEKKSDITSDTIENKEEKT 126
            KI E  +    + I    + T
Sbjct: 523 VKIPENPTTPEKENIRKGNKDT 544

[Close]
BLAST of Spg024398 vs. ExPASy TrEMBL
Match: A0A6J1DAE9 (uncharacterized protein LOC111018514 OS=Momordica charantia OX=3673 GN=LOC111018514 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-05
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 0 

Query: 44  LDKIAQEIKNRPQGTLPSKTEIPHTEGKEQCKAVTLRSGLEYDGKRYPV 93
           + + A ++K RPQG+ P  TE+   +G EQCKAVTLRSGL Y+G + PV
Sbjct: 277 MGQXANDLKARPQGSFPGHTEVXKRDGXEQCKAVTLRSGLSYEGPKMPV 325

[Close]
BLAST of Spg024398 vs. ExPASy TrEMBL
Match: A0A6J1DPM2 (uncharacterized protein LOC111022366 OS=Momordica charantia OX=3673 GN=LOC111022366 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-05
Identity = 38/99 (38.38%), Postives = 55/99 (55.56%), Query Frame = 0 

Query: 46  KIAQEIKNRPQGTLPSKTEIPHTEGKEQCKAVTLRSGLEYDGKRYPVNQEDEIPKEAREK 105
           ++A ++K RPQG++P  TE+P   GKEQCKAVTLRSGL Y+G +  V            +
Sbjct: 10  QLANDLKARPQGSIPGHTEVPKRYGKEQCKAVTLRSGLSYEGPKMLV------------E 69

Query: 106 IFEKKSDITSDTIENKEEKTKEHEALETLKGEPLKGNNF 145
           + +  + I +   E K+EKT   E  E     P K ++F
Sbjct: 70  VKKPSTSIQNAPSEAKKEKTTSGEG-EASGSSPQKKSSF 95

[Close]
BLAST of Spg024398 vs. ExPASy TrEMBL
Match: A0A6J1DZC3 (uncharacterized protein LOC111024449 OS=Momordica charantia OX=3673 GN=LOC111024449 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-05
Identity = 30/70 (42.86%), Postives = 42/70 (60.00%), Query Frame = 0 

Query: 44  LDKIAQEIKNRPQGTLPSKTEIPHTEGKEQCKAVTLRSGLEYDGKRYPVNQEDEIPKEAR 103
           + ++A E+KNRP+GTLPS TE P  EG+E CK +T RSGL Y+  + P  +    P + +
Sbjct: 295 MGQLASELKNRPRGTLPSATEEPKIEGREHCKTITTRSGLAYEEPKMP-REGSSCPTKEK 354

Query: 104 EKIFEKKSDI 114
           E   E    I
Sbjct: 355 ETATEPDEPI 363

The following BLAST results are available for this feature:
BLAST of Spg024398 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022159345.11.3e-0764.58uncharacterized protein LOC111025764 [Momordica charantia][more]
XP_022158408.13.9e-0745.12uncharacterized protein LOC111024897, partial [Momordica charantia][more]
XP_030494994.14.3e-0629.05uncharacterized protein LOC115710785 [Cannabis sativa][more]
XP_030509259.11.6e-0531.25uncharacterized protein LOC115723937 [Cannabis sativa][more]
XP_022150317.12.1e-0553.06uncharacterized protein LOC111018514 [Momordica charantia][more]
BLAST of Spg024398 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg024398 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DYG06.4e-0864.58uncharacterized protein LOC111025764 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DW021.9e-0745.12uncharacterized protein LOC111024897 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1DAE91.0e-0553.06uncharacterized protein LOC111018514 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A6J1DPM21.8e-0538.38uncharacterized protein LOC111022366 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DZC32.3e-0542.86uncharacterized protein LOC111024449 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
BLAST of Spg024398 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg024398.1Spg024398.1mRNA