Spg024382 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg024382
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase
Location	scaffold4: 23049576 .. 23050616 (+)
RNA-Seq Expression	Spg024382
Synteny	Spg024382

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTAGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAATGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTAATATGCCTTGCTAGATTTTTAATGACGAACTTGCGAGATGTTTTAGAAAGCCTTTATCCTTACACGCTTATGTTAAACGCTTTGATTGAGCATATTTATACGTTTAAAGGCTTATCACGTGTTTTGACTTCCAGATTTAGAGTTTTAAAGTTAGTCACTCACTGGGCTTCATAGCTCATTCTTTCAAAATGTTTTTCCACTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAAATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTTTCTATTATGTAAATGTTTTGTAAGGATTGGATAATTTAGTCCTAGAGGTCGTGGTTGTATAACCCTAGTTGTATATGTTATTGGTTGTGATATCTATATCAGGTTATCATCTGAACCAAGTTATGTCAGGGCGGCAGCTCGTGTTTGTTGAAAGTTTTTTTTCAGGGATTCCAATGTGTTTTGTTTCATGTAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCAGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTGGTATCAGAGTAGTTAGCTCCATGGGAAAAGAGACATGGTAGTTAGTGCTAAGAAAATCCAGGAAGTATATAGTTAGACGTTGGATCAGTTCAGATAGAACTAGCAGAGTATGGTCCGAGTATTGTTGAGAGTGAGTCCAGTCAGGACTAG

mRNA sequence

ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAAATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTTTCTATTATGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCAGGCTAAGCTAGCAGGTGGTCCGGGAGGGGACGTTGGATCAGTTCAGATAGAACTAGCAGAGTATGGTCCGAGTATTGTTGAGAGTGAGTCCAGTCAGGACTAG

Coding sequence (CDS)

ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAAATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTTTCTATTATGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCAGGCTAAGCTAGCAGGTGGTCCGGGAGGGGACGTTGGATCAGTTCAGATAGAACTAGCAGAGTATGGTCCGAGTATTGTTGAGAGTGAGTCCAGTCAGGACTAG

Protein sequence

MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSKSSSSTWVELYIESFYYVNVLFNVQEGQRVSLEEDDVRWLHAIFQAKLAGGPGGDVGSVQIELAEYGPSIVESESSQD

Homology

[Close]

BLAST of Spg024382 vs. NCBI nr
Match: TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 5.4e-21
Identity = 63/107 (58.88%), Postives = 73/107 (68.22%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSKSSSSTWVE 60
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS+S+SSTW+E
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  LYIESFYYVNVLFNVQEGQRVSLEEDDVRWLHAIFQAKLAGGPGGDV 91
           LY+E F +V + +         + EDDV WLHA+F+AK AGGPGG V
Sbjct: 61  LYVE-FVHVEMFWLAG-----IVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]

BLAST of Spg024382 vs. NCBI nr
Match: KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 5.4e-21
Identity = 63/107 (58.88%), Postives = 73/107 (68.22%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSKSSSSTWVE 60
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS+S+SSTW+E
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  LYIESFYYVNVLFNVQEGQRVSLEEDDVRWLHAIFQAKLAGGPGGDV 91
           LY+E F +V + +         + EDDV WLHA+F+AK AGGPGG V
Sbjct: 61  LYVE-FVHVEMFWLAG-----IVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]

BLAST of Spg024382 vs. NCBI nr
Match: KAA0062407.1 (uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK26574.1 uncharacterized protein E5676_scaffold313G001830 [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 3.9e-19
Identity = 57/100 (57.00%), Postives = 69/100 (69.00%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSKSSSSTWVELYIESF------YYVN- 60
           MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS+S+ +TW+ELY ES       Y+ N 
Sbjct: 1   MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSESNFNTWLELYFESVHVEIFCYFTNQ 60

Query: 61  ------VLFNVQEGQRVSLEEDDVRWLHAIFQAKLAGGPG 88
                 ++FNV  G    +  DDV WLHA+F+ K A  PG
Sbjct: 61  VMSGLHLVFNVSVGSTGIVRGDDVCWLHAVFRDKTAVDPG 100

[Close]

BLAST of Spg024382 vs. NCBI nr
Match: TYK08952.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 4.7e-17
Identity = 64/125 (51.20%), Postives = 75/125 (60.00%), Query Frame = 0


Query: 1    MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSKSSSSTWVE 60
            MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE  +S+SSTW+E
Sbjct: 1286 MTEILSLRLDGTVCTQVIFPLSTLSVLRDNNAVVEIELPVPDTLPTSAEIFESNSSTWLE 1345

Query: 61   LYIESFYYVNVLFN-----------VQEGQRVSLEEDDVRWLHAIFQAKLAGGP-GGDVG 97
            LY+ES  +V +LF              EG    +  DDV WLHA+F+AK AGGP GG  G
Sbjct: 1346 LYLES-VHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHAVFRAKTAGGPEGGVTG 1405

[Close]

BLAST of Spg024382 vs. NCBI nr
Match: KAA0062409.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 7.6e-15
Identity = 49/91 (53.85%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 17  VEIELPVPDTLPTSAESSKSSSSTWVELYIESF------YYVN-------VLFNVQEGQR 76
           VEIELPVPDTLPTSAESS+S+SSTW+ELY ES       Y+ N       ++F+V  G  
Sbjct: 94  VEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGST 153

Query: 77  VSLEEDDVRWLHAIFQAKLAGGPGGDVGSVQ 95
             +  DDV WLHA+F+AK  GGPGG V +++
Sbjct: 154 GIVRGDDVCWLHAVFRAKTVGGPGGGVTTLE 184

[Close]

BLAST of Spg024382 vs. ExPASy TrEMBL
Match: A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.6e-21
Identity = 63/107 (58.88%), Postives = 73/107 (68.22%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSKSSSSTWVE 60
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS+S+SSTW+E
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  LYIESFYYVNVLFNVQEGQRVSLEEDDVRWLHAIFQAKLAGGPGGDV 91
           LY+E F +V + +         + EDDV WLHA+F+AK AGGPGG V
Sbjct: 61  LYVE-FVHVEMFWLAG-----IVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]

BLAST of Spg024382 vs. ExPASy TrEMBL
Match: A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.6e-21
Identity = 63/107 (58.88%), Postives = 73/107 (68.22%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSKSSSSTWVE 60
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS+S+SSTW+E
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  LYIESFYYVNVLFNVQEGQRVSLEEDDVRWLHAIFQAKLAGGPGGDV 91
           LY+E F +V + +         + EDDV WLHA+F+AK AGGPGG V
Sbjct: 61  LYVE-FVHVEMFWLAG-----IVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]

BLAST of Spg024382 vs. ExPASy TrEMBL
Match: A0A5A7V638 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001830 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.9e-19
Identity = 57/100 (57.00%), Postives = 69/100 (69.00%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSKSSSSTWVELYIESF------YYVN- 60
           MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS+S+ +TW+ELY ES       Y+ N 
Sbjct: 1   MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSESNFNTWLELYFESVHVEIFCYFTNQ 60

Query: 61  ------VLFNVQEGQRVSLEEDDVRWLHAIFQAKLAGGPG 88
                 ++FNV  G    +  DDV WLHA+F+ K A  PG
Sbjct: 61  VMSGLHLVFNVSVGSTGIVRGDDVCWLHAVFRDKTAVDPG 100

[Close]

BLAST of Spg024382 vs. ExPASy TrEMBL
Match: A0A5D3CCC7 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00430 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.3e-17
Identity = 64/125 (51.20%), Postives = 75/125 (60.00%), Query Frame = 0


Query: 1    MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSKSSSSTWVE 60
            MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE  +S+SSTW+E
Sbjct: 1286 MTEILSLRLDGTVCTQVIFPLSTLSVLRDNNAVVEIELPVPDTLPTSAEIFESNSSTWLE 1345

Query: 61   LYIESFYYVNVLFN-----------VQEGQRVSLEEDDVRWLHAIFQAKLAGGP-GGDVG 97
            LY+ES  +V +LF              EG    +  DDV WLHA+F+AK AGGP GG  G
Sbjct: 1346 LYLES-VHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHAVFRAKTAGGPEGGVTG 1405

[Close]

BLAST of Spg024382 vs. ExPASy TrEMBL
Match: A0A5A7V9N3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G002110 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.7e-15
Identity = 49/91 (53.85%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 17  VEIELPVPDTLPTSAESSKSSSSTWVELYIESF------YYVN-------VLFNVQEGQR 76
           VEIELPVPDTLPTSAESS+S+SSTW+ELY ES       Y+ N       ++F+V  G  
Sbjct: 94  VEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGST 153

Query: 77  VSLEEDDVRWLHAIFQAKLAGGPGGDVGSVQ 95
             +  DDV WLHA+F+AK  GGPGG V +++
Sbjct: 154 GIVRGDDVCWLHAVFRAKTVGGPGGGVTTLE 184

The following BLAST results are available for this feature:

BLAST of Spg024382 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK27998.1	5.4e-21	58.88	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0066851.1	5.4e-21	58.88	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0062407.1	3.9e-19	57.00	uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK...	[more]
TYK08952.1	4.7e-17	51.20	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0062409.1	7.6e-15	53.85	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Spg024382 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg024382 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DX39	2.6e-21	58.88	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38...	[more]
A0A5A7VMG9	2.6e-21	58.88	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A5A7V638	1.9e-19	57.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CCC7	2.3e-17	51.20	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7V9N3	3.7e-15	53.85	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15...	[more]

BLAST of Spg024382 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg024382.1	Spg024382.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0016740	transferase activity