Spg024326 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg024326
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold4: 19523986 .. 19525585 (-)
RNA-Seq ExpressionSpg024326
SyntenySpg024326
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCGTTAAGAGGTCTAGAAGATCTGCAGCTTCCTCATCCTCTGCACCCTTTGATAGGCTCAAATTTGTGAGTAAGGATGCTGAAGCTGTCTTCAATACTTATGTGGTAAATAGGGGAGTCATTCCTGAAAGAGGGCTAGTTCCAAGTGCCCAAAACCAGCCTGACCTCGCCCATAGCATAGCTGAGGGGGTTGGGGTAGGTTCACTAGGCACCCCGAGGCCTCCATAGTCCCGATAGTAAGGGAATTTTACACTAACATGGTGGAAGGATCCACTACTTCCTTTGTTAGGAGTAAAATTATCCCTTTCAACTCGGCCTCCATTAACCAATTCTATGGCCTTCCTGATATTGAGCGTGATGGGTACAATGATTACGCAAGTAATTACTTTGACGCCCATCAAATTATTGAATATTTATGTAGGTCGGGGGCAATATAGTTAATGAGAAGGGGTGAAGCAATAAATTTCAAATCCTCTGACTTAACAGTGGATAACAGAGTCTAGAACAGTTTTCTATGTGCCAAACTCATGCCTGTGATGCATCTTAGCGATGTAACAAAGGAAAGAGCAGCTCTGTTATTCGCTATAGCGATCGGCCGCACTGTAGATGTAGGGAAAGTTATATATGCTTCCATGCGCCAGATTCGCAGAGGAGCCAACACAGTAGGTCTAGGGTAGCCCAACCACCACCTCTGCAATAGTAGGTAGAGCCAGCAGATGAGCCCCTAGAACAGGAAGAGCAACACCACGTCGAGCATCCACCTTTCACGCTTGAGGTGTTAGAGGAGAGGATGAATCAGATGAGACTCGCGCAACTGCGCCAGTATGAGAGCCAACAGCGAAGGGAGGCTCGACACTTCAGACAATCTGAGGCACAGTTCACTTACATTCAGCAGTACATAGTTGCCTCGACGTCTGGACAGCCTCTTCCACCGCCATTGCCTCCTTATGAGTCTCTTGAGGATGAGGAGTGATGCACTTTCATATGAAGCTCATCCACGGATTTTTCTATCCTTTTCCTTATTTTTCTTTATCTTATTTCTTAGCTTGTTTTGCTTTTATTTTTCCCGTTTTTATTTGTTTTCTTTTTTGTAGGTGTTGGGTTTCCAGAGTGGATAAAAATATGGTAAAAATAGACTCTAGAACACTGTGCAAGCATACACAATCCGCAACAAGTGATAAGTAATTTATCGTATCCACGGGGCTGAATATCTCTCACTTTATCTCTCTTGTGTAACTCTTTAATGGTTTCAAAAGTGGTTAAATTGATTGATTTTGATAAAATGCTGAAGTAAGGAAAATGACAGAACAAAAAGTAAACAAATAAAGCAGACAGATTGGAAACAGACGTTGGTCAGGATTTTAATAATTGTTTTAAAAGATGCTCTAGCAATATTATTGATCAGGCAAATCTCTTGCAGTCTTATTAACAGGGTCCTCCCGAAACTCTGGATTTTTTGGAATGTGTTTCAACCCCAATGACGCTCTACCGATCAAGCACTAGGCAACTGGTTATTCCTAACTCAGTCACTGGTGTTCACCAATACACAATTGAAGGAATTGAATCCTTAAGCGGAAGCGAATTGAATCGAGCGTGA

mRNA sequence

ATGAGCGTTAAGAGGTCTAGAAGATCTGCAGCTTCCTCATCCTCTGCACCCTTTGATAGGCTCAAATTTGTGAGTAAGGATGCTGAAGCTGTCTTCAATACTTATGTGGTAAATAGGGGAGTCATTCCTGAAAGAGGGCTAGTTCCAAGTGCCCAAAACCAGCCTGACCTCGCCCATAGCATAGCTGAGGGGGTTGGGAACAGTTTTCTATGTGCCAAACTCATGCCTGTGATGCATCTTAGCGATGTAACAAAGGAAAGAGCAGCTCTGTTATTCGCTATAGCGATCGGCCGCACTGTAGATGTAGAGCCAGCAGATGAGCCCCTAGAACAGGAAGAGCAACACCACGTCGAGCATCCACCTTTCACGCTTGAGGTGTTAGAGGAGAGGATGAATCAGATGAGACTCGCGCAACTGCGCCAGTATGAGAGCCAACAGCGAAGGGAGGCTCGACACTTCAGACAATCTGAGGCACAGTTCACTTACATTCAGCAGTACATAGTTGCCTCGACGTCTGGACAGCCTCTTCCACCGCCATTGCCTCCTTATGAGTCTCTTGAGGATGAGGAGTGTTGGGTTTCCAGAGTGGATAAAAATATGGGTCCTCCCGAAACTCTGGATTTTTTGGAATGTGTTTCAACCCCAATGACGCTCTACCGATCAAGCACTAGGCAACTGGTTATTCCTAACTCAGTCACTGGTGTTCACCAATACACAATTGAAGGAATTGAATCCTTAAGCGGAAGCGAATTGAATCGAGCGTGA

Coding sequence (CDS)

ATGAGCGTTAAGAGGTCTAGAAGATCTGCAGCTTCCTCATCCTCTGCACCCTTTGATAGGCTCAAATTTGTGAGTAAGGATGCTGAAGCTGTCTTCAATACTTATGTGGTAAATAGGGGAGTCATTCCTGAAAGAGGGCTAGTTCCAAGTGCCCAAAACCAGCCTGACCTCGCCCATAGCATAGCTGAGGGGGTTGGGAACAGTTTTCTATGTGCCAAACTCATGCCTGTGATGCATCTTAGCGATGTAACAAAGGAAAGAGCAGCTCTGTTATTCGCTATAGCGATCGGCCGCACTGTAGATGTAGAGCCAGCAGATGAGCCCCTAGAACAGGAAGAGCAACACCACGTCGAGCATCCACCTTTCACGCTTGAGGTGTTAGAGGAGAGGATGAATCAGATGAGACTCGCGCAACTGCGCCAGTATGAGAGCCAACAGCGAAGGGAGGCTCGACACTTCAGACAATCTGAGGCACAGTTCACTTACATTCAGCAGTACATAGTTGCCTCGACGTCTGGACAGCCTCTTCCACCGCCATTGCCTCCTTATGAGTCTCTTGAGGATGAGGAGTGTTGGGTTTCCAGAGTGGATAAAAATATGGGTCCTCCCGAAACTCTGGATTTTTTGGAATGTGTTTCAACCCCAATGACGCTCTACCGATCAAGCACTAGGCAACTGGTTATTCCTAACTCAGTCACTGGTGTTCACCAATACACAATTGAAGGAATTGAATCCTTAAGCGGAAGCGAATTGAATCGAGCGTGA

Protein sequence

MSVKRSRRSAASSSSAPFDRLKFVSKDAEAVFNTYVVNRGVIPERGLVPSAQNQPDLAHSIAEGVGNSFLCAKLMPVMHLSDVTKERAALLFAIAIGRTVDVEPADEPLEQEEQHHVEHPPFTLEVLEERMNQMRLAQLRQYESQQRREARHFRQSEAQFTYIQQYIVASTSGQPLPPPLPPYESLEDEECWVSRVDKNMGPPETLDFLECVSTPMTLYRSSTRQLVIPNSVTGVHQYTIEGIESLSGSELNRA
Homology
[Close]
BLAST of Spg024326 vs. NCBI nr
Match: EOY01634.1 (Uncharacterized protein TCM_011481 [Theobroma cacao])

HSP 1 Score: 56.2 bits (134), Expect = 4.7e-04
Identity = 44/140 (31.43%), Postives = 66/140 (47.14%), Query Frame = 0 

Query: 1   MSVKRSRRSAASSSSAPFDRLKFVSKDAEAVFNTYVVNRGVIPERGL-VPSAQNQPDLAH 60
           M+ KRSR     SSS  +DR KFVS +A A +    V +  +PERG  +P+      L H
Sbjct: 1   MAPKRSR-----SSSGSYDRTKFVSAEAFAQYTQSFVQKSPVPERGFDLPTEFYANVLEH 60

Query: 61  ----------------------SIAEGVGNS---------------FLCAKLMPVMHLSD 103
                                  +++G+  S               FL A+L+PV H+S 
Sbjct: 61  ENGFTFYLDGVITFLCGPGTQWKVSKGIPVSFKANALNKFFKVWYHFLTARLLPVKHVSV 120

[Close]
BLAST of Spg024326 vs. NCBI nr
Match: KAA0033353.1 (putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa] >TYJ96637.1 putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 4.7e-04
Identity = 56/205 (27.32%), Postives = 68/205 (33.17%), Query Frame = 0 

Query: 1   MSVKRSRRSAASSSSAPFDRLKFVSKDAEAVFNTYVVNRGVIPERGLVPSAQNQPDLAHS 60
           MS K  R  +A SS   F+R KF+SKDA   +  +VV   VIPERGL P   +QP L  +
Sbjct: 2   MSSKTKRARSALSSEGAFNRHKFISKDAADGYKKHVVKSSVIPERGLAPCEVHQPQLYQN 61

Query: 61  I---------------------------AEG----------------------------- 103
           I                            EG                             
Sbjct: 62  IMQRGWSDFVKQPEPAVVSIVREFYANMVEGSSRSFVRGRQVSFDYGTINRYYHLPNFER 121

[Close]
BLAST of Spg024326 vs. ExPASy TrEMBL
Match: A0A5D3BBY3 (Putative S-locus lectin protein kinase family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26G00020 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.3e-04
Identity = 56/205 (27.32%), Postives = 68/205 (33.17%), Query Frame = 0 

Query: 1   MSVKRSRRSAASSSSAPFDRLKFVSKDAEAVFNTYVVNRGVIPERGLVPSAQNQPDLAHS 60
           MS K  R  +A SS   F+R KF+SKDA   +  +VV   VIPERGL P   +QP L  +
Sbjct: 2   MSSKTKRARSALSSEGAFNRHKFISKDAADGYKKHVVKSSVIPERGLAPCEVHQPQLYQN 61

Query: 61  I---------------------------AEG----------------------------- 103
           I                            EG                             
Sbjct: 62  IMQRGWSDFVKQPEPAVVSIVREFYANMVEGSSRSFVRGRQVSFDYGTINRYYHLPNFER 121

[Close]
BLAST of Spg024326 vs. ExPASy TrEMBL
Match: A0A061EH53 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_011481 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.3e-04
Identity = 44/140 (31.43%), Postives = 66/140 (47.14%), Query Frame = 0 

Query: 1   MSVKRSRRSAASSSSAPFDRLKFVSKDAEAVFNTYVVNRGVIPERGL-VPSAQNQPDLAH 60
           M+ KRSR     SSS  +DR KFVS +A A +    V +  +PERG  +P+      L H
Sbjct: 1   MAPKRSR-----SSSGSYDRTKFVSAEAFAQYTQSFVQKSPVPERGFDLPTEFYANVLEH 60

Query: 61  ----------------------SIAEGVGNS---------------FLCAKLMPVMHLSD 103
                                  +++G+  S               FL A+L+PV H+S 
Sbjct: 61  ENGFTFYLDGVITFLCGPGTQWKVSKGIPVSFKANALNKFFKVWYHFLTARLLPVKHVSV 120

[Close]
BLAST of Spg024326 vs. ExPASy TrEMBL
Match: A0A0A0KER1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G149380 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.1e-04
Identity = 56/205 (27.32%), Postives = 67/205 (32.68%), Query Frame = 0 

Query: 1   MSVKRSRRSAASSSSAPFDRLKFVSKDAEAVFNTYVVNRGVIPERGLVPSAQNQPDLAHS 60
           MS K  R  +A SS   F+R KF+SKDA   +   VV   VIPERGL P   +QP L  +
Sbjct: 2   MSSKTKRARSALSSEGAFNRHKFISKDAADRYRKLVVKSSVIPERGLAPCEVHQPQLFQN 61

Query: 61  I---------------------------AEG----------------------------- 103
           I                            EG                             
Sbjct: 62  IMQRGWSDFVKQPEPAVLSIVREFYANMVEGSSRSFVRGRQVSFDYGTINRYYHLPNFER 121

The following BLAST results are available for this feature:
BLAST of Spg024326 vs. NCBI nr
Match NameE-valueIdentityDescription
EOY01634.14.7e-0431.43Uncharacterized protein TCM_011481 [Theobroma cacao][more]
KAA0033353.14.7e-0427.32putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa]... [more]
BLAST of Spg024326 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg024326 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BBY32.3e-0427.32Putative S-locus lectin protein kinase family protein OS=Cucumis melo var. makuw... [more]
A0A061EH532.3e-0431.43Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_011481 PE=4 SV=1[more]
A0A0A0KER15.1e-0427.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G149380 PE=4 SV=1[more]
BLAST of Spg024326 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg024326.1Spg024326.1mRNA