Spg024324 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg024324
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold4: 21826470 .. 21828663 (-)
RNA-Seq ExpressionSpg024324
SyntenySpg024324
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCTAAAAGGCGTGCGGCTCTTGAAGAGGAAGCACGGTTGCGTGATGCTGAAGAATCCTCCAAAGTGGGAGAAAGCTCTGGGCAAAGAGAGACTTCAACGGGTAATATCTCCAAACCTTCAACTAACCCAACTTCTTCTTGCAGGGACAAGACCTTTGTGACTTACAGTGCAAGGAAGAAAGACTCTAAGAAGGTTGCACCCAAAAAGCCCTTGATCATTGAGCCCCTTAAAGTAGCAAGAATACCGGCGGATGTGTTCGAAAACATGATTGGTCAAGCTGTTGCACAAGCCCTCATCATTGTTGAAGGTTACAGGGTTGAGCAAGATTTACTTGAAGAGATAAGGGATGAAAAAGAAAGGGAAATTCAGAGTATTGCGGTCTGAAGCTGAGTTAGCCAGAAAAAGAGATGTGGAGGATGAGAGAAAAGGGGAAAAAGCTGAGAAAAAGAGAGAAGAATAAAGACAAGAGGCCGAGAGGGCCATTCAAGCTGAGAAAGAGTGAAAAGAAGATGAGGAACTCAGGAGATTAACTGCTGAACTCCAACTCCTTGAGGAAGAAAAAGAAAGACGAGAGATCCTTAGAGAAGAAGAAGAAAGAAGAAAAGAAGTTGAGGATTTCCTTGCAGCCTTTGAGCCACTGCACAAGGCTCAAAGTGAAGCTGAACAAAACTGCAAGAAGTTGAAGAATAGGCCCTTGAAGGGCCAAAAGAAGAAAAATCAGAAAACGAAAAAGAGGAAGAAAATGAAGGCCAGAATGCAACCGCATTTGGGCCGCATTATGAGGAAGGCCAAGAAAAGGGCAGTGAAAAGCAACAAGTTGATGAAGCCCTTGATCCTTTGTTCGAATATGATGTTAGAGGACCCCCACCAACTGTTGAAAGCACGTCTTCAGGAGAGAAAAAGGATGAAGAGGGAATTGAAAAAGAAGAGGCCGAGACCTCTAGTGATAGTGAGCAGAGTCAGATTCTGAAATCCCATTTTTACCAAGAGGTCGAGGACAAGGTCCATGGACGCCTCTCCAAAGCCTCCTACAACCACCACACCTGTCAAGCACAAAATCAAATCGCCTAAAGCTCCTTCACCAAAGAATCTATTCCCTGAAGTCTTGAAGGATGTTAATTTCCAGGAGAAGATAGAGATTATGAGAAAAAAGGATTTCTTGAACAAGAAAGGATTCTCAAATAGAGAGGGAACTTTGCCAGACTTTGTAACCAAGGTCATCACTCAGTACAAATGGCAAGAGTTATGTGCTCAACCTCAAGAGGTCGTGGTGCCTCTAGTTCGAGAGTTCTATGTTGGATTGAGGGAGGAGAGCATGAGCATGTCGGTGGTGAGGGGGAAGATTGTCAGTTTCTCTTCGGTTGACATCTACAGGGTTTATCGGATTAAGGCACCTTTGCATCCAAGAGGCAATGATGCAATCAAGAACCCATCGGCCAAACAGTTAAAATAAGCTTTGAAGATGGTGGCCAATAAAGGAGTTCGGTGGAAGGAGTCACAAACAAAGGTGAAGACACTAGTGTCAAGCGATTTAAAGTCAGAACCGGCAGTGTGGCTTCACTTCATCAAAAACAGGTTGATGCCCACAACCCACGATAGTACAATTTCATTAGAGAGGGTTATGCTTCTCTAGAACATCATGAAGGGGTTGGAGATAAACATAGGGAGCATCATCAGAGAGGAGATCCTTTCATGTGGAAGGAAGAGAGCTGGGAAGTTGTTCTTTGGGTCCCTCATAACCCAACTTTGTCCGAGGGTGAAAATTGTTCCTGGAAAAGATGAGGAGCGTCACTTTTTCAGGCCCACTATCGACTTGCCTCTGATAAGGAAGCTTCAACAAAACAACGCGTAGAAAAAGGATAAGGCTTCCACATCCCAAGCTACTCCACCTCCGGGGCTGAATCTTGCTTCACCTCCTCAGCACACTCCTGTTTCAGGGCCTACACCATCATCATAGGCCCTTGCATTTGCCTTCCGACAGCTGGACCAGAATTAACACAAGTTGAAAACTTACTGGGTCTATGCGAAGGAAAGAGAGGAAGCAATTAGAGAGTTCTACCTCTCTATCGCCCCAAGCATGGCTCCTGTATTCCCTTACTTCCATCAAGCCCTGCTGCCTCAAGAAGAAAAAGAATCTGACGATGAAGATGAAGATGAAGATGAAGAAGACTCCTTGGATGAGGAATAG

mRNA sequence

ATGGGAGCTAAAAGGCGTGCGGCTCTTGAAGAGGAAGCACGGTTGCGTGATGCTGAAGAATCCTCCAAAGTGGGAGAAAGCTCTGGGCAAAGAGAGACTTCAACGGGTAATATCTCCAAACCTTCAACTAACCCAACTTCTTCTTGCAGGGACAAGACCTTTGTGACTTACAGTGCAAGGAAGAAAGACTCTAAGAAGGTTGCACCCAAAAAGCCCTTGATCATTGAGCCCCTTAAAGTAGCAAGAATACCGGCGGATGTGTTCGAAAACATGATTGGTCAAGCTGTTGCACAAGCCCTCATCATTGTTGAAGGTTACAGGGTTGAGCAAGATTTACTTGAAGAGATAAGGGATGAAAAAGAAAGGGAAATTCAGAGTATTGCGGCCCTTGAAGGGCCAAAAGAAGAAAAATCAGAAAACGAAAAAGAGGAAGAAAATGAAGGCCAGAATGCAACCGCATTTGGGCCGCATTATGAGGAAGGCCAAGAAAAGGGCAGTGAAAAGCAACAAGTTGATGAAGCCCTTGATCCTTTGTTCGAATATGATGTTAGAGGACCCCCACCAACTGTTGAAAGCACGTCTTCAGGAGAGAAAAAGGATGAAGAGGGAATTGAAAAAGAAGAGGCCGAGACCTCTAGTGATAGTGAGCAGAGTCAGATTCTGAAATCCCATTTTTACCAAGAGGTCGAGGACAAGGAGAAGATAGAGATTATGAGAAAAAAGGATTTCTTGAACAAGAAAGGATTCTCAAATAGAGAGGGAACTTTGCCAGACTTTGTAACCAAGGTCATCACTCAGTACAAATGGCAAGAGTTATGTGCTCAACCTCAAGAGGTCGTGGTGCCTCTAGTTCGAGAGTTCTATGTTGGATTGAGGGAGGAGAGCATGAGCATGTCGGTGGTGAGGGGGAAGATTGTCAGTTTCTCTTCGGTTGACATCTACAGGGTTTATCGGATTAAGGCACCTTTGCATCCAAGAGGCAATGATGCAATCAAGAACCCATCGGCCAAACAAGAGGAAGCAATTAGAGAGTTCTACCTCTCTATCGCCCCAAGCATGGCTCCTGTATTCCCTTACTTCCATCAAGCCCTGCTGCCTCAAGAAGAAAAAGAATCTGACGATGAAGATGAAGATGAAGATGAAGAAGACTCCTTGGATGAGGAATAG

Coding sequence (CDS)

ATGGGAGCTAAAAGGCGTGCGGCTCTTGAAGAGGAAGCACGGTTGCGTGATGCTGAAGAATCCTCCAAAGTGGGAGAAAGCTCTGGGCAAAGAGAGACTTCAACGGGTAATATCTCCAAACCTTCAACTAACCCAACTTCTTCTTGCAGGGACAAGACCTTTGTGACTTACAGTGCAAGGAAGAAAGACTCTAAGAAGGTTGCACCCAAAAAGCCCTTGATCATTGAGCCCCTTAAAGTAGCAAGAATACCGGCGGATGTGTTCGAAAACATGATTGGTCAAGCTGTTGCACAAGCCCTCATCATTGTTGAAGGTTACAGGGTTGAGCAAGATTTACTTGAAGAGATAAGGGATGAAAAAGAAAGGGAAATTCAGAGTATTGCGGCCCTTGAAGGGCCAAAAGAAGAAAAATCAGAAAACGAAAAAGAGGAAGAAAATGAAGGCCAGAATGCAACCGCATTTGGGCCGCATTATGAGGAAGGCCAAGAAAAGGGCAGTGAAAAGCAACAAGTTGATGAAGCCCTTGATCCTTTGTTCGAATATGATGTTAGAGGACCCCCACCAACTGTTGAAAGCACGTCTTCAGGAGAGAAAAAGGATGAAGAGGGAATTGAAAAAGAAGAGGCCGAGACCTCTAGTGATAGTGAGCAGAGTCAGATTCTGAAATCCCATTTTTACCAAGAGGTCGAGGACAAGGAGAAGATAGAGATTATGAGAAAAAAGGATTTCTTGAACAAGAAAGGATTCTCAAATAGAGAGGGAACTTTGCCAGACTTTGTAACCAAGGTCATCACTCAGTACAAATGGCAAGAGTTATGTGCTCAACCTCAAGAGGTCGTGGTGCCTCTAGTTCGAGAGTTCTATGTTGGATTGAGGGAGGAGAGCATGAGCATGTCGGTGGTGAGGGGGAAGATTGTCAGTTTCTCTTCGGTTGACATCTACAGGGTTTATCGGATTAAGGCACCTTTGCATCCAAGAGGCAATGATGCAATCAAGAACCCATCGGCCAAACAAGAGGAAGCAATTAGAGAGTTCTACCTCTCTATCGCCCCAAGCATGGCTCCTGTATTCCCTTACTTCCATCAAGCCCTGCTGCCTCAAGAAGAAAAAGAATCTGACGATGAAGATGAAGATGAAGATGAAGAAGACTCCTTGGATGAGGAATAG

Protein sequence

MGAKRRAALEEEARLRDAEESSKVGESSGQRETSTGNISKPSTNPTSSCRDKTFVTYSARKKDSKKVAPKKPLIIEPLKVARIPADVFENMIGQAVAQALIIVEGYRVEQDLLEEIRDEKEREIQSIAALEGPKEEKSENEKEEENEGQNATAFGPHYEEGQEKGSEKQQVDEALDPLFEYDVRGPPPTVESTSSGEKKDEEGIEKEEAETSSDSEQSQILKSHFYQEVEDKEKIEIMRKKDFLNKKGFSNREGTLPDFVTKVITQYKWQELCAQPQEVVVPLVREFYVGLREESMSMSVVRGKIVSFSSVDIYRVYRIKAPLHPRGNDAIKNPSAKQEEAIREFYLSIAPSMAPVFPYFHQALLPQEEKESDDEDEDEDEEDSLDEE
Homology
[Close]
BLAST of Spg024324 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-05
Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = 0 

Query: 246 KKGF----SNREGTLPDFVTKVITQYKWQELCAQPQEVVVPLVREFYVGLREESMSMSVV 305
           +KGF    S   G LP F+ +VITQ+ W++ CA P++ +VPLVREFY  L +   +   V
Sbjct: 46  EKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTDPEENTVYV 105

Query: 306 RGKIVSFSSVDIYRVYRIKAPL 324
           RG  VS+S   I  V+ +  P+
Sbjct: 106 RGVQVSWSEEAINAVFGLGDPV 126

[Close]
BLAST of Spg024324 vs. NCBI nr
Match: PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-05
Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = 0 

Query: 246 KKGF----SNREGTLPDFVTKVITQYKWQELCAQPQEVVVPLVREFYVGLREESMSMSVV 305
           +KGF    S   G LP F+ +VITQ+ W++ CA P++ +VPLVREFY  L +   +   V
Sbjct: 37  EKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTDPVENTVYV 96

Query: 306 RGKIVSFSSVDIYRVYRIKAPL 324
           RG  VS+S   I  V+ +  P+
Sbjct: 97  RGVQVSWSEEAINAVFGLGDPV 117

[Close]
BLAST of Spg024324 vs. NCBI nr
Match: PON65868.1 (hypothetical protein PanWU01x14_113570 [Parasponia andersonii])

HSP 1 Score: 59.3 bits (142), Expect = 8.5e-05
Identity = 38/115 (33.04%), Postives = 56/115 (48.70%), Query Frame = 0 

Query: 225 FYQEVEDKEKIEIMRKKDFLNKKGF---SNREGTLPDFVTKVITQYKWQELCAQPQEVVV 284
           F  E  +    E ++ +    +KGF   +++    P F+  VITQ+ WQ  CA P++ +V
Sbjct: 16  FKSEAAETRYEENIQNRPLSAEKGFVGDNSKPLEKPPFIADVITQHNWQLFCAHPEDPIV 75

Query: 285 PLVREFYVGLREESMSMSVVRGKIVSFSSVDIYRVYRIKAPL--HPRGNDAIKNP 335
           PLVREFY  +         VRG  V  SS  I  +Y +  P+  H    +AI  P
Sbjct: 76  PLVREFYANMTNPDDDTVYVRGVQVLLSSEAINTIYGLGDPIDEHSEFVEAITEP 130

[Close]
BLAST of Spg024324 vs. NCBI nr
Match: PON42276.1 (hypothetical protein PanWU01x14_283280 [Parasponia andersonii])

HSP 1 Score: 57.8 bits (138), Expect = 2.5e-04
Identity = 34/104 (32.69%), Postives = 53/104 (50.96%), Query Frame = 0 

Query: 236 EIMRKKDFLNKKGF---SNREGTLPDFVTKVITQYKWQELCAQPQEVVVPLVREFYVGLR 295
           E ++ +    +KGF   +++    P F+  VITQ+ WQ  CA P++++ PLVREFY  + 
Sbjct: 27  ENIQNRPLSAEKGFVGDNSKPLEKPPFIEDVITQHNWQLFCAHPEDLIAPLVREFYANMT 86

Query: 296 EESMSMSVVRGKIVSFSSVDIYRVYRIKAPL--HPRGNDAIKNP 335
                   VRG  V  S+  I  +Y +  P+  H    +AI  P
Sbjct: 87  NPDDDTVYVRGVQVPLSAEAINTIYGLGDPVDEHSEFVEAITEP 130

[Close]
BLAST of Spg024324 vs. NCBI nr
Match: PON32444.1 (hypothetical protein PanWU01x14_361130 [Parasponia andersonii])

HSP 1 Score: 56.2 bits (134), Expect = 7.2e-04
Identity = 27/65 (41.54%), Postives = 38/65 (58.46%), Query Frame = 0 

Query: 259 FVTKVITQYKWQELCAQPQEVVVPLVREFYVGLREESMSMSVVRGKIVSFSSVDIYRVYR 318
           FV +VI Q+ W++ CA P++ +VPLVREFY  L +       VRG  V +S   I  VY 
Sbjct: 6   FVAQVINQHNWRQFCAHPEDPIVPLVREFYAHLTDPEEDTVYVRGMQVPWSEEAINAVYG 65

Query: 319 IKAPL 324
           +  P+
Sbjct: 66  LGDPV 70

[Close]
BLAST of Spg024324 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.3e-06
Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = 0 

Query: 246 KKGF----SNREGTLPDFVTKVITQYKWQELCAQPQEVVVPLVREFYVGLREESMSMSVV 305
           +KGF    S   G LP F+ +VITQ+ W++ CA P++ +VPLVREFY  L +   +   V
Sbjct: 46  EKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTDPEENTVYV 105

Query: 306 RGKIVSFSSVDIYRVYRIKAPL 324
           RG  VS+S   I  V+ +  P+
Sbjct: 106 RGVQVSWSEEAINAVFGLGDPV 126

[Close]
BLAST of Spg024324 vs. ExPASy TrEMBL
Match: A0A2P5AGA5 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_335450 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-05
Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = 0 

Query: 246 KKGF----SNREGTLPDFVTKVITQYKWQELCAQPQEVVVPLVREFYVGLREESMSMSVV 305
           +KGF    S   G LP F+ +VITQ+ W++ CA P++ +VPLVREFY  L +   +   V
Sbjct: 37  EKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTDPVENTVYV 96

Query: 306 RGKIVSFSSVDIYRVYRIKAPL 324
           RG  VS+S   I  V+ +  P+
Sbjct: 97  RGVQVSWSEEAINAVFGLGDPV 117

[Close]
BLAST of Spg024324 vs. ExPASy TrEMBL
Match: A0A2P5CXV1 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113570 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.1e-05
Identity = 38/115 (33.04%), Postives = 56/115 (48.70%), Query Frame = 0 

Query: 225 FYQEVEDKEKIEIMRKKDFLNKKGF---SNREGTLPDFVTKVITQYKWQELCAQPQEVVV 284
           F  E  +    E ++ +    +KGF   +++    P F+  VITQ+ WQ  CA P++ +V
Sbjct: 16  FKSEAAETRYEENIQNRPLSAEKGFVGDNSKPLEKPPFIADVITQHNWQLFCAHPEDPIV 75

Query: 285 PLVREFYVGLREESMSMSVVRGKIVSFSSVDIYRVYRIKAPL--HPRGNDAIKNP 335
           PLVREFY  +         VRG  V  SS  I  +Y +  P+  H    +AI  P
Sbjct: 76  PLVREFYANMTNPDDDTVYVRGVQVLLSSEAINTIYGLGDPIDEHSEFVEAITEP 130

The following BLAST results are available for this feature:
BLAST of Spg024324 vs. NCBI nr
Match NameE-valueIdentityDescription
PON46472.11.3e-0541.46hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
PON35554.12.2e-0541.46hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii][more]
PON65868.18.5e-0533.04hypothetical protein PanWU01x14_113570 [Parasponia andersonii][more]
PON42276.12.5e-0432.69hypothetical protein PanWU01x14_283280 [Parasponia andersonii][more]
PON32444.17.2e-0441.54hypothetical protein PanWU01x14_361130 [Parasponia andersonii][more]
BLAST of Spg024324 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg024324 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5BCG46.3e-0641.46Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A2P5AGA51.1e-0541.46Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A2P5CXV14.1e-0533.04Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113570 PE... [more]
BLAST of Spg024324 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 103..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..148
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 365..388
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..54
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 160..179
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 194..213
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 369..388
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..221
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg024324.1Spg024324.1mRNA