Spg024299 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg024299
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	syndetin isoform X2
Location	scaffold4: 16679023 .. 16679576 (-)
RNA-Seq Expression	Spg024299
Synteny	Spg024299

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCAATGTCTCTTCTATCGGGACTACAGGAATTATGAATTCTGTTTACATGGATGGAGGTGATCCCAATAGGGAGTCCCGGGCAGATAGCAGTACAACATCAACCAGTGGCTCTCCCTGGTATCATCTGAGAAAAGATGCTTAGTTTTATTTCCCAAACCCTACAAAGAGGCCGTAAGAACCTTTGGCAACTAACTACAAGTCGTGTGTCAGTACTGCTTTCTTCTGCTGCTGTTTGTTCAACAAGCATTCATCAATTTTTGAAAAACTATGAAGATCTCAATGTCTTCTTATTGGCTGGAGAAGCCTTCTGTGGAGTTGAAGCAGTTGAGTTTAGGCAAAAGTTGAAGGTTGTTTGTGAAAACTATTATGTGGCTTTCCATAAGCAGAGTATGCACGTAAGTTGACCCTCTTGCTCAACTTTTCCATACTTCTGGTCTACAATTGTTTATATAAGCAGCGTTTGTAGTTTGTGGGATTTGAAATATAGTTGAGTTTTTCCTTTAGTTTCATAGTTTACTTGGTTGTATGGCTATCCTGCAGTTACGGTAG

mRNA sequence

ATGACCAATGTCTCTTCTATCGGGACTACAGGAATTATGAATTCTGTTTACATGGATGGAGGTGATCCCAATAGGGAGTCCCGGGCAGATAGCAGTACAACATCAACCAGTGGCTCTCCCTGTCGTGTGTCAGTACTGCTTTCTTCTGCTGCTGTTTGTTCAACAAGCATTCATCAATTTTTGAAAAACTATGAAGATCTCAATGTCTTCTTATTGGCTGGAGAAGCCTTCTGTGGAGTTGAAGCAGTTGAGTTTAGGCAAAAGTTGAAGGTTGTTTGTGAAAACTATTATGTGGCTTTCCATAAGCAGAGTATGCACTTACGGTAG

Coding sequence (CDS)

ATGACCAATGTCTCTTCTATCGGGACTACAGGAATTATGAATTCTGTTTACATGGATGGAGGTGATCCCAATAGGGAGTCCCGGGCAGATAGCAGTACAACATCAACCAGTGGCTCTCCCTGTCGTGTGTCAGTACTGCTTTCTTCTGCTGCTGTTTGTTCAACAAGCATTCATCAATTTTTGAAAAACTATGAAGATCTCAATGTCTTCTTATTGGCTGGAGAAGCCTTCTGTGGAGTTGAAGCAGTTGAGTTTAGGCAAAAGTTGAAGGTTGTTTGTGAAAACTATTATGTGGCTTTCCATAAGCAGAGTATGCACTTACGGTAG

Protein sequence

MTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSPCRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMHLR

Homology

[Close]

BLAST of Spg024299 vs. NCBI nr
Match: XP_022152900.1 (syndetin isoform X1 [Momordica charantia])

HSP 1 Score: 173.3 bits (438), Expect = 1.1e-39
Identity = 96/133 (72.18%), Postives = 99/133 (74.44%), Query Frame = 0


Query: 2   TNVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP--------------------- 61
           TNVSS+GTTGIMNSVYMD  DP+RESR DSST STSGSP                     
Sbjct: 442 TNVSSMGTTGIMNSVYMDDDDPDRESRMDSSTASTSGSPWYHLRKDAISFVSQTLQRGRK 501

Query: 62  -------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVC 107
                   RVSVLLSSAAVCSTSIHQFLKNYEDLNVF+LAGEAFCGVEAVEFRQKLK VC
Sbjct: 502 NLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFILAGEAFCGVEAVEFRQKLKSVC 561

[Close]

BLAST of Spg024299 vs. NCBI nr
Match: XP_022152901.1 (syndetin isoform X2 [Momordica charantia])

HSP 1 Score: 173.3 bits (438), Expect = 1.1e-39
Identity = 96/133 (72.18%), Postives = 99/133 (74.44%), Query Frame = 0


Query: 2   TNVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP--------------------- 61
           TNVSS+GTTGIMNSVYMD  DP+RESR DSST STSGSP                     
Sbjct: 442 TNVSSMGTTGIMNSVYMDDDDPDRESRMDSSTASTSGSPWYHLRKDAISFVSQTLQRGRK 501

Query: 62  -------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVC 107
                   RVSVLLSSAAVCSTSIHQFLKNYEDLNVF+LAGEAFCGVEAVEFRQKLK VC
Sbjct: 502 NLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFILAGEAFCGVEAVEFRQKLKSVC 561

[Close]

BLAST of Spg024299 vs. NCBI nr
Match: XP_038895533.1 (syndetin isoform X1 [Benincasa hispida])

HSP 1 Score: 172.9 bits (437), Expect = 1.5e-39
Identity = 95/132 (71.97%), Postives = 98/132 (74.24%), Query Frame = 0


Query: 3   NVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP---------------------- 62
           NVSS+G+TGI NSVYMDGGD NRESR DSST STSGSP                      
Sbjct: 444 NVSSMGSTGITNSVYMDGGDSNRESRTDSSTASTSGSPWYHLRKDAIHFVSQTLQRGRKN 503

Query: 63  ------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCE 107
                  RVSVLLSSAAVCSTSIHQFLKNYEDLNVF+LAGEAFCGVEAVEFRQKLK VCE
Sbjct: 504 LWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFILAGEAFCGVEAVEFRQKLKTVCE 563

[Close]

BLAST of Spg024299 vs. NCBI nr
Match: XP_038895534.1 (syndetin isoform X2 [Benincasa hispida])

HSP 1 Score: 172.9 bits (437), Expect = 1.5e-39
Identity = 95/132 (71.97%), Postives = 98/132 (74.24%), Query Frame = 0


Query: 3   NVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP---------------------- 62
           NVSS+G+TGI NSVYMDGGD NRESR DSST STSGSP                      
Sbjct: 259 NVSSMGSTGITNSVYMDGGDSNRESRTDSSTASTSGSPWYHLRKDAIHFVSQTLQRGRKN 318

Query: 63  ------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCE 107
                  RVSVLLSSAAVCSTSIHQFLKNYEDLNVF+LAGEAFCGVEAVEFRQKLK VCE
Sbjct: 319 LWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFILAGEAFCGVEAVEFRQKLKTVCE 378

[Close]

BLAST of Spg024299 vs. NCBI nr
Match: XP_011654229.1 (syndetin isoform X3 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 2.0e-36
Identity = 90/132 (68.18%), Postives = 93/132 (70.45%), Query Frame = 0


Query: 3   NVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP---------------------- 62
           NVSS+G  GI NS+YMD GD NRESR DSS  STSGSP                      
Sbjct: 331 NVSSMGAAGITNSIYMDEGDFNRESRTDSSAASTSGSPWYHLRKDGIHFVSQTLQRGRKN 390

Query: 63  ------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCE 107
                  RVSVLLSSAAVCSTSIHQFLKNYEDLNVF LAGEAFCGVEAVEFRQKLK+VCE
Sbjct: 391 LWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFTLAGEAFCGVEAVEFRQKLKIVCE 450

[Close]

BLAST of Spg024299 vs. ExPASy TrEMBL
Match: A0A6J1DJ46 (syndetin isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020518 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.4e-40
Identity = 96/133 (72.18%), Postives = 99/133 (74.44%), Query Frame = 0


Query: 2   TNVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP--------------------- 61
           TNVSS+GTTGIMNSVYMD  DP+RESR DSST STSGSP                     
Sbjct: 442 TNVSSMGTTGIMNSVYMDDDDPDRESRMDSSTASTSGSPWYHLRKDAISFVSQTLQRGRK 501

Query: 62  -------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVC 107
                   RVSVLLSSAAVCSTSIHQFLKNYEDLNVF+LAGEAFCGVEAVEFRQKLK VC
Sbjct: 502 NLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFILAGEAFCGVEAVEFRQKLKSVC 561

[Close]

BLAST of Spg024299 vs. ExPASy TrEMBL
Match: A0A6J1DF95 (syndetin isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020518 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.4e-40
Identity = 96/133 (72.18%), Postives = 99/133 (74.44%), Query Frame = 0


Query: 2   TNVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP--------------------- 61
           TNVSS+GTTGIMNSVYMD  DP+RESR DSST STSGSP                     
Sbjct: 442 TNVSSMGTTGIMNSVYMDDDDPDRESRMDSSTASTSGSPWYHLRKDAISFVSQTLQRGRK 501

Query: 62  -------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVC 107
                   RVSVLLSSAAVCSTSIHQFLKNYEDLNVF+LAGEAFCGVEAVEFRQKLK VC
Sbjct: 502 NLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFILAGEAFCGVEAVEFRQKLKSVC 561

[Close]

BLAST of Spg024299 vs. ExPASy TrEMBL
Match: A0A0A0LVM9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G145890 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 9.6e-37
Identity = 90/132 (68.18%), Postives = 93/132 (70.45%), Query Frame = 0


Query: 3   NVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP---------------------- 62
           NVSS+G  GI NS+YMD GD NRESR DSS  STSGSP                      
Sbjct: 138 NVSSMGAAGITNSIYMDEGDFNRESRTDSSAASTSGSPWYHLRKDGIHFVSQTLQRGRKN 197

Query: 63  ------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCE 107
                  RVSVLLSSAAVCSTSIHQFLKNYEDLNVF LAGEAFCGVEAVEFRQKLK+VCE
Sbjct: 198 LWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFTLAGEAFCGVEAVEFRQKLKIVCE 257

[Close]

BLAST of Spg024299 vs. ExPASy TrEMBL
Match: A0A5D3CVZ5 (Syndetin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00300 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.1e-36
Identity = 89/132 (67.42%), Postives = 96/132 (72.73%), Query Frame = 0


Query: 3   NVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP---------------------- 62
           +VSS+G+TGI +S+YMD GD  RESR DSS  STSGSP                      
Sbjct: 474 DVSSMGSTGITHSIYMDEGDSIRESRTDSSAASTSGSPWYHLRKDAIDFVSQTLQRGRKN 533

Query: 63  ------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCE 107
                  RVSVLLSSAAVCSTSIHQFLKNYEDLNVF+LAGEAFCGVEAVEFRQKLK+VCE
Sbjct: 534 LWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFILAGEAFCGVEAVEFRQKLKIVCE 593

[Close]

BLAST of Spg024299 vs. ExPASy TrEMBL
Match: A0A5A7VC68 (Syndetin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00950 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.1e-36
Identity = 89/132 (67.42%), Postives = 96/132 (72.73%), Query Frame = 0


Query: 3   NVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP---------------------- 62
           +VSS+G+TGI +S+YMD GD  RESR DSS  STSGSP                      
Sbjct: 478 DVSSMGSTGITHSIYMDEGDSIRESRTDSSAASTSGSPWYHLRKDAIDFVSQTLQRGRKN 537

Query: 63  ------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCE 107
                  RVSVLLSSAAVCSTSIHQFLKNYEDLNVF+LAGEAFCGVEAVEFRQKLK+VCE
Sbjct: 538 LWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFILAGEAFCGVEAVEFRQKLKIVCE 597

[Close]

BLAST of Spg024299 vs. TAIR 10
Match: AT2G27900.1 (CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 316 Blast hits to 252 proteins in 92 species: Archae - 0; Bacteria - 2; Metazoa - 200; Fungi - 2; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). )

HSP 1 Score: 107.8 bits (268), Expect = 5.4e-24
Identity = 50/65 (76.92%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 42  RVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFH 101
           RVSVLLSS    STSIHQFLKNYEDL++F+LAGEAFCG E V+FR+KLK VCENY+ AFH
Sbjct: 534 RVSVLLSSPGASSTSIHQFLKNYEDLSIFILAGEAFCGFEVVDFREKLKGVCENYFTAFH 593

Query: 102 KQSMH 107
           +QSMH
Sbjct: 594 RQSMH 598

[Close]

BLAST of Spg024299 vs. TAIR 10
Match: AT2G27900.2 (CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 107.8 bits (268), Expect = 5.4e-24
Identity = 50/65 (76.92%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 42  RVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFH 101
           RVSVLLSS    STSIHQFLKNYEDL++F+LAGEAFCG E V+FR+KLK VCENY+ AFH
Sbjct: 534 RVSVLLSSPGASSTSIHQFLKNYEDLSIFILAGEAFCGFEVVDFREKLKGVCENYFTAFH 593

Query: 102 KQSMH 107
           +QSMH
Sbjct: 594 RQSMH 598

The following BLAST results are available for this feature:

BLAST of Spg024299 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152900.1	1.1e-39	72.18	syndetin isoform X1 [Momordica charantia]	[more]
XP_022152901.1	1.1e-39	72.18	syndetin isoform X2 [Momordica charantia]	[more]
XP_038895533.1	1.5e-39	71.97	syndetin isoform X1 [Benincasa hispida]	[more]
XP_038895534.1	1.5e-39	71.97	syndetin isoform X2 [Benincasa hispida]	[more]
XP_011654229.1	2.0e-36	68.18	syndetin isoform X3 [Cucumis sativus]	[more]

BLAST of Spg024299 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg024299 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DJ46	5.4e-40	72.18	syndetin isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020518 PE=4 SV=1	[more]
A0A6J1DF95	5.4e-40	72.18	syndetin isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020518 PE=4 SV=1	[more]
A0A0A0LVM9	9.6e-37	68.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G145890 PE=4 SV=1	[more]
A0A5D3CVZ5	2.1e-36	67.42	Syndetin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00300 PE=4 ...	[more]
A0A5A7VC68	2.1e-36	67.42	Syndetin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00950 PE=4 ...	[more]

BLAST of Spg024299 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27900.1	5.4e-24	76.92	CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (Int...	[more]
AT2G27900.2	5.4e-24	76.92	CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (Int...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..41
None	No IPR available	PANTHER	PTHR13258:SF4	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN-RELATED	coord: 41..105
IPR040047	Syndetin	PANTHER	PTHR13258	UNCHARACTERIZED	coord: 41..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg024299.1	Spg024299.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032456	endocytic recycling
biological_process	GO:0042147	retrograde transport, endosome to Golgi
cellular_component	GO:1990745	EARP complex