Spg024258 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg024258
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S13
Locationscaffold4: 20588236 .. 20591211 (+)
RNA-Seq ExpressionSpg024258
SyntenySpg024258
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTGTGTTGTCTTATTTTTGCTGCTTGATATGCTTTTCACGCGAGTTCTACAGGTTTATTTCTCCAAGTTTCTCCTTGATTTTGAATCCTTTGCTCTTTAGCCTCCTAATCAATTTTTTTTTGTCTTCTAATTTTTAATGCCCAAGCAACGTGGTTTTCAAGCTAATAGGACCAAATTTAGAATGTAAACTACATTTCTCATTTTTCTGTTGTTGGAGTGTGTAATAGCTTTCATTCAAATTTGTCGAGTTTTTATGTTGGTTCTGGATTGTCATGGGTTTTATGATTATAGGTTTCAAGTTTTGTATTATGGATGACTTTTTATATCCTCAAATAATTTGAACTTTAATTTTGATCATTTGCTATTGTGAAGAAGTTTGCCGCCTAGCCTTAAAAAGACGTTATCGTCTATTATCTTATTATGCACTTTTTCCTATATGGTTCATACAACTGGTGTGTCGTCCCTATTGAAACTACTTTTTTTTTCTTTTTTCATGTGTATTCACTTGTCTAACCTTGATATGTTCTCTCTATGGTCCTAATTTTCTTGGTGGTTGTAAACTTTTTGACATTGTTTTTAACACTTCGCAGATCCAAAAGAGGACTTGAGGAAAATTGAATTTTTTTTTATGCTGGATTAGTTTTTTTTTTTTTTTTTTTTTTGGTATTTTGAGTGTAGGGATTGATGTTTAGAGATTGATTTGAGTAGGGGTGAGGAATTGTTTTGAATGTTGGGAGTGGGTTGTTGCTTAGAGATTGTTCATAAGTTTATCTGTATTTAAGATAAGTTAGTTTAAGTTTTGTTGCTATGAACTTAGTTATTTGTTTTGATGTTAAGTTTGTTTGTTTAGTTCAATCTATTATGTATTGTAACTTTATTTTCTAGAAATTACTTATACATTTAAATTGACATTTGTTTCAATTATTCACTTGCAAAACTTGTTTGTTGTTAATTTGTTCTATTAGAGAGAAATTGAATGCAGTTGATATTCAAACTGTAGCAGAGTTGACTAGCTTTATGAAAATGCTTAAATGAATCATGCAATCACAAGAAGGAATGACTAAATAGGTATGAACTCTATACTTTGGTAAAATATAATGGTAGTAAACTGTTTTGAGATTTGTTGTATGGCTATCCTGCAGTTATGGTAGCCAATGATTTGCATATAGGGTAGTGGGCTAGTGCTTCAAGATTGATTTGAGTACATGGTGGAGTTAAGACATGCTTATATTTATGTTCTTATGTTTAGATAAGTGTAATTACAAGTTTTGAGTTTATTTGGTTCGTTTGGTACATTTATGTTCATGGTAGTTGAGTTTTGAAAAGCTTAGATGCTACGTTCATAAGCTTTGAAACGTTTTGGGTAAATTTAGGTTTTATGTTTTGTAACTTTGGTAACTTAGATAAGTTTTTGTGTTACGTTTATTTATGTTTATGATAGTTCGTTGATGTTATGTTCATTATTTTTGAAAGGTTTGAAATTTTTGGTTGTTTTAGAGGGATTGAGAGTTCAAGGGAGGAGATTTGGAAGTCGATTAGATTTAACAATTCCTTATGGGCGTCGGTTTGTCGGCCTTTTTTGTAATTTTTAGTGGGGGTTGATGTTTAGAGATTGATTTGAGGAGGGGTGAGAAATTGCTTTGAATATAGGGGGTGAGTTGTTGCTTAGAGATCAATTTTTTCATGAGTTTAAGTTTACTTAAGTTTAGTTAATTTGGTGGATGTTTAGCTTAGTTTGTATCGATAAATTAGTTTGATTTACCTATTTAGTTATTATGTTTTAAGAATTTGGTAACTCAGTTAAGTTTTGATGTTATGTTCATTACTTTTAAAAACTTATTTCAATTTGTTTTAAGGGTTAGTTTGATGAGTTTGTGGAGGGTGGGAGATTGTTTTGAGTGTGATAGAGGAGTGATAGATTGTTTTGATTGAAGGGGGTGAGTGAGTGCTAAGGATCATTTTGAGCATGTCTTAGGTTCTTAGTCTGTGATCGTGAAGAGTTCTTGTAAAAGATTGCTCATGTGATTGGCTAACAATGGAAATTGCAGTCGTTGATTTTAGTGAAGCATAGTGACATGTTTTTTAGTGTCATCTGAGTGCCAGTTCTGATGGTCAAATGTCTAAGAAAATCGCAAGTTCTTCCATTGTTTGTCATTTTATCTGCTAGTCTTTCTAATGGAAGGGAAGTGAATCTTTGTACTCGCTATAGAAATTGATGGCTTTCCTTTGACCATTCAAGTTGCCGAGAACTTTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTCAAATAGGTGTTACTGTCTATGATTCTCACAGGATTGCTCAGATGAAAAGTGTAACTGGGAGCAAGATCTTAAGGCTCATGGTGAGTCCCATCTACCCTTCCTCCACTGAACTTCTATTTTATACATCAGCCAGAATTATTATGTTATTCTTTTTAACATGTTTTTTTTTTTGGCTCAGGGATAGCTCCTGAAATCTCGGAGGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATCAGAAAGCATTTGGAGAGAAACAGAAAAGACAAGGATTCCAAGTTCAGGTTGATTTTGGTGGAGAGTAGGATCCATCACCTAGCCCGGTATTACAAAAAGACAAAGAAGCTTCCCCCCTGTTTGGACGTAATAAGTATTTTAAGGCACAAAAGCACGTGAATTATTTAATAGATAGTTTGTGATTTTGAATATATTGTAGAGATAGGTATTATGTAATTTTGAATATATGGTGGAAATGGGTGTAAAGTTCTTCAATTTGGAATTGTCCAAATGGAGTTGATAGGTCTTGTAATTTTGTAATTGTTCATGTGGGTTGATAGGTCTTGTAATTTTTGGAATTGTTCATATGGGTTGATAGTTGTAATTTTGGAATTGCTCATATGGAGGTTAGATACTTTTGTAATGTTGAAGATAATAAATTTTATTGAAGTTATTGGGGGAAATTTG

mRNA sequence

ATGAATTGTGTTGTCTTATTTTTGCTGCTTGATATGCTTTTCACGCGAGTTCTACAGTCGTTGATTTTAGTGAAGCATAAAATTGATGGCTTTCCTTTGACCATTCAAGTTGCCGAGAACTTTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTCAAATAGGTGTTACTGTCTATGATTCTCACAGGATTGCTCAGATGAAAAGTGTAACTGGGAGCAAGATCTTAAGGCTCATGGTGAGGATAGCTCCTGAAATCTCGGAGGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATCAGAAAGCATTTGGAGAGAAACAGAAAAGACAAGGATTCCAAGTTCAGGTTGATTTTGGTGGAGAGTAGGATCCATCACCTAGCCCGGTATTACAAAAAGACAAAGAAGCTTCCCCCCTGTTTGGACGTAATAAGTATTTTAAGGCACAAAAGCACGTGA

Coding sequence (CDS)

ATGAATTGTGTTGTCTTATTTTTGCTGCTTGATATGCTTTTCACGCGAGTTCTACAGTCGTTGATTTTAGTGAAGCATAAAATTGATGGCTTTCCTTTGACCATTCAAGTTGCCGAGAACTTTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTCAAATAGGTGTTACTGTCTATGATTCTCACAGGATTGCTCAGATGAAAAGTGTAACTGGGAGCAAGATCTTAAGGCTCATGGTGAGGATAGCTCCTGAAATCTCGGAGGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATCAGAAAGCATTTGGAGAGAAACAGAAAAGACAAGGATTCCAAGTTCAGGTTGATTTTGGTGGAGAGTAGGATCCATCACCTAGCCCGGTATTACAAAAAGACAAAGAAGCTTCCCCCCTGTTTGGACGTAATAAGTATTTTAAGGCACAAAAGCACGTGA

Protein sequence

MNCVVLFLLLDMLFTRVLQSLILVKHKIDGFPLTIQVAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVRIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPPCLDVISILRHKST
Homology
[Close]
BLAST of Spg024258 vs. NCBI nr
Match: OWM71868.1 (hypothetical protein CDL15_Pgr017751 [Punica granatum])

HSP 1 Score: 174.5 bits (441), Expect = 7.1e-40
Identity = 90/109 (82.57%), Postives = 97/109 (88.99%), Query Frame = 0 

Query: 33  LTIQVAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDL 92
           ++IQV EN CKFAKKGLTPSQIGV + DSH IAQ+KSVTGSKILR++    +APEI EDL
Sbjct: 1   MSIQVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDL 60

Query: 93  YHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP 140
           YHLIKK VSIRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP
Sbjct: 61  YHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPP 109

[Close]
BLAST of Spg024258 vs. NCBI nr
Match: MBA0719002.1 (hypothetical protein [Gossypium laxum])

HSP 1 Score: 172.9 bits (437), Expect = 2.1e-39
Identity = 89/108 (82.41%), Postives = 96/108 (88.89%), Query Frame = 0 

Query: 34  TIQVAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLY 93
           T+QV EN CKFAKKGLTPSQIGV + DSH IAQ+KSVTGSKILR++    +APEI EDLY
Sbjct: 24  TMQVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLY 83

Query: 94  HLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP 140
           HLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP
Sbjct: 84  HLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPP 131

[Close]
BLAST of Spg024258 vs. NCBI nr
Match: KAG5558428.1 (hypothetical protein RHGRI_008383 [Rhododendron griersonianum])

HSP 1 Score: 172.2 bits (435), Expect = 3.5e-39
Identity = 90/113 (79.65%), Postives = 95/113 (84.07%), Query Frame = 0 

Query: 37  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVRIAPEISEDLYHLIKK 96
           V EN CKFAKKG+TPSQIGV + DSH IAQ+KSVTGSKILRL    APEI EDLYHLIKK
Sbjct: 33  VEENICKFAKKGMTPSQIGVILRDSHGIAQVKSVTGSKILRL----APEIPEDLYHLIKK 92

Query: 97  VVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPPCLDVISILRH 150
            V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP    +S L H
Sbjct: 93  AVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYVSSLFH 141

[Close]
BLAST of Spg024258 vs. NCBI nr
Match: XP_022143980.1 (40S ribosomal protein S13-like [Momordica charantia] >XP_022959507.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_022964010.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_023000449.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023006177.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023514341.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >XP_023547500.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >KAG6574796.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013377.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6593712.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026051.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171.8 bits (434), Expect = 4.6e-39
Identity = 89/105 (84.76%), Postives = 94/105 (89.52%), Query Frame = 0 

Query: 37  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLI 96
           VAEN CKFAKKGLTPSQIGV + DSH IAQ+KSVTGSKILR++    +APEI EDLYHLI
Sbjct: 33  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 97  KKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP 140
           KK VSIRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP
Sbjct: 93  KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPP 137

[Close]
BLAST of Spg024258 vs. NCBI nr
Match: XP_038906798.1 (40S ribosomal protein S13 [Benincasa hispida])

HSP 1 Score: 171.8 bits (434), Expect = 4.6e-39
Identity = 89/105 (84.76%), Postives = 94/105 (89.52%), Query Frame = 0 

Query: 37  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLI 96
           VAEN CKFAKKGLTPSQIGV + DSH IAQ+KSVTGSKILR++    +APEI EDLYHLI
Sbjct: 33  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 97  KKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP 140
           KK VSIRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP
Sbjct: 93  KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPP 137

[Close]
BLAST of Spg024258 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 8.7e-41
Identity = 87/105 (82.86%), Postives = 92/105 (87.62%), Query Frame = 0 

Query: 37  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLI 96
           V EN CKFAKKGLTPSQIGV + DSH IAQ+ SVTGSKILR++    +APEI EDLYHLI
Sbjct: 33  VEENICKFAKKGLTPSQIGVILRDSHGIAQVNSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 97  KKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP 140
           KK VSIRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP
Sbjct: 93  KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPP 137

[Close]
BLAST of Spg024258 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 9.6e-40
Identity = 85/105 (80.95%), Postives = 92/105 (87.62%), Query Frame = 0 

Query: 37  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLI 96
           V E+ CKFAKKGLTPSQIGV + DSH I Q+KSVTGSKILR++    +APEI EDLYHLI
Sbjct: 33  VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 97  KKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP 140
           KK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP
Sbjct: 93  KKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPP 137

[Close]
BLAST of Spg024258 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 9.6e-40
Identity = 85/105 (80.95%), Postives = 92/105 (87.62%), Query Frame = 0 

Query: 37  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLI 96
           V E+ CKFAKKGLTPSQIGV + DSH I Q+KSVTGSKILR++    +APEI EDLYHLI
Sbjct: 33  VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 97  KKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP 140
           KK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP
Sbjct: 93  KKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPP 137

[Close]
BLAST of Spg024258 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.6e-39
Identity = 86/105 (81.90%), Postives = 91/105 (86.67%), Query Frame = 0 

Query: 37  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLI 96
           V E  CKFAKKGLTPSQIGV + DSH IAQ+KSVTGSKILR++    +APEI EDLYHLI
Sbjct: 33  VDETICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 97  KKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP 140
           KK VSIRKHLER RKDKDSKFRLILVESRIH LARYYKKTKKLPP
Sbjct: 93  KKAVSIRKHLERFRKDKDSKFRLILVESRIHRLARYYKKTKKLPP 137

[Close]
BLAST of Spg024258 vs. ExPASy Swiss-Prot
Match: Q69UI2 (40S ribosomal protein S13-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0117200 PE=3 SV=2)

HSP 1 Score: 143.7 bits (361), Expect = 1.8e-33
Identity = 77/105 (73.33%), Postives = 84/105 (80.00%), Query Frame = 0 

Query: 37  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLI 96
           V E   K AKKG  PSQIGV + D H I  +KSVTGSKILR++    +APEI EDLY LI
Sbjct: 33  VEEMIMKAAKKGQMPSQIGVVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLI 92

Query: 97  KKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP 140
           KK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYK+TKKLPP
Sbjct: 93  KKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPP 137

[Close]
BLAST of Spg024258 vs. ExPASy TrEMBL
Match: A0A218WH84 (Ribosomal_S13_N domain-containing protein OS=Punica granatum OX=22663 GN=CDL15_Pgr017751 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 3.4e-40
Identity = 90/109 (82.57%), Postives = 97/109 (88.99%), Query Frame = 0 

Query: 33  LTIQVAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDL 92
           ++IQV EN CKFAKKGLTPSQIGV + DSH IAQ+KSVTGSKILR++    +APEI EDL
Sbjct: 1   MSIQVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDL 60

Query: 93  YHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP 140
           YHLIKK VSIRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP
Sbjct: 61  YHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPP 109

[Close]
BLAST of Spg024258 vs. ExPASy TrEMBL
Match: A0A7J9A571 (Ribosomal_S13_N domain-containing protein OS=Gossypium laxum OX=34288 GN=Golax_006711 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.0e-39
Identity = 89/108 (82.41%), Postives = 96/108 (88.89%), Query Frame = 0 

Query: 34  TIQVAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLY 93
           T+QV EN CKFAKKGLTPSQIGV + DSH IAQ+KSVTGSKILR++    +APEI EDLY
Sbjct: 24  TMQVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLY 83

Query: 94  HLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP 140
           HLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP
Sbjct: 84  HLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPP 131

[Close]
BLAST of Spg024258 vs. ExPASy TrEMBL
Match: A0A6J1KV63 (40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111498990 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 2.2e-39
Identity = 89/105 (84.76%), Postives = 94/105 (89.52%), Query Frame = 0 

Query: 37  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLI 96
           VAEN CKFAKKGLTPSQIGV + DSH IAQ+KSVTGSKILR++    +APEI EDLYHLI
Sbjct: 33  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 97  KKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP 140
           KK VSIRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP
Sbjct: 93  KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPP 137

[Close]
BLAST of Spg024258 vs. ExPASy TrEMBL
Match: A0A6J1HJL3 (40S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111464161 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 2.2e-39
Identity = 89/105 (84.76%), Postives = 94/105 (89.52%), Query Frame = 0 

Query: 37  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLI 96
           VAEN CKFAKKGLTPSQIGV + DSH IAQ+KSVTGSKILR++    +APEI EDLYHLI
Sbjct: 33  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 97  KKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP 140
           KK VSIRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP
Sbjct: 93  KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPP 137

[Close]
BLAST of Spg024258 vs. ExPASy TrEMBL
Match: A0A6J1CQC4 (40S ribosomal protein S13-like OS=Momordica charantia OX=3673 GN=LOC111013762 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 2.2e-39
Identity = 89/105 (84.76%), Postives = 94/105 (89.52%), Query Frame = 0 

Query: 37  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLI 96
           VAEN CKFAKKGLTPSQIGV + DSH IAQ+KSVTGSKILR++    +APEI EDLYHLI
Sbjct: 33  VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 97  KKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP 140
           KK VSIRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP
Sbjct: 93  KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPP 137

[Close]
BLAST of Spg024258 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 164.5 bits (415), Expect = 6.8e-41
Identity = 85/105 (80.95%), Postives = 92/105 (87.62%), Query Frame = 0 

Query: 37  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLI 96
           V E+ CKFAKKGLTPSQIGV + DSH I Q+KSVTGSKILR++    +APEI EDLYHLI
Sbjct: 33  VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 97  KKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP 140
           KK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP
Sbjct: 93  KKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPP 137

[Close]
BLAST of Spg024258 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 164.5 bits (415), Expect = 6.8e-41
Identity = 85/105 (80.95%), Postives = 92/105 (87.62%), Query Frame = 0 

Query: 37  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLI 96
           V E+ CKFAKKGLTPSQIGV + DSH I Q+KSVTGSKILR++    +APEI EDLYHLI
Sbjct: 33  VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 97  KKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP 140
           KK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP
Sbjct: 93  KKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPP 137

The following BLAST results are available for this feature:
BLAST of Spg024258 vs. NCBI nr
Match NameE-valueIdentityDescription
OWM71868.17.1e-4082.57hypothetical protein CDL15_Pgr017751 [Punica granatum][more]
MBA0719002.12.1e-3982.41hypothetical protein [Gossypium laxum][more]
KAG5558428.13.5e-3979.65hypothetical protein RHGRI_008383 [Rhododendron griersonianum][more]
XP_022143980.14.6e-3984.7640S ribosomal protein S13-like [Momordica charantia] >XP_022959507.1 40S ribosom... [more]
XP_038906798.14.6e-3984.7640S ribosomal protein S13 [Benincasa hispida][more]
BLAST of Spg024258 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P623028.7e-4182.8640S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1[more]
P592239.6e-4080.9540S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1[more]
P592249.6e-4080.9540S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1[more]
P462981.6e-3981.9040S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1[more]
Q69UI21.8e-3373.3340S ribosomal protein S13-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g011... [more]
BLAST of Spg024258 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A218WH843.4e-4082.57Ribosomal_S13_N domain-containing protein OS=Punica granatum OX=22663 GN=CDL15_P... [more]
A0A7J9A5711.0e-3982.41Ribosomal_S13_N domain-containing protein OS=Gossypium laxum OX=34288 GN=Golax_0... [more]
A0A6J1KV632.2e-3984.7640S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111498990 PE=3 ... [more]
A0A6J1HJL32.2e-3984.7640S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111464161 PE=... [more]
A0A6J1CQC42.2e-3984.7640S ribosomal protein S13-like OS=Momordica charantia OX=3673 GN=LOC111013762 PE... [more]
BLAST of Spg024258 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G60770.16.8e-4180.95Ribosomal protein S13/S15 [more]
AT4G00100.16.8e-4180.95ribosomal protein S13A [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000589Ribosomal protein S15SMARTSM01387Ribosomal_S15_2coord: 74..150
e-value: 3.7E-5
score: 18.2
IPR000589Ribosomal protein S15PFAMPF00312Ribosomal_S15coord: 86..135
e-value: 3.2E-12
score: 46.5
IPR000589Ribosomal protein S15PROSITEPS00362RIBOSOMAL_S15coord: 100..130
IPR000589Ribosomal protein S15CDDcd00353Ribosomal_S15p_S13ecoord: 84..139
e-value: 9.5395E-19
score: 73.6914
NoneNo IPR availableGENE3D1.10.287.10coord: 85..143
e-value: 1.8E-29
score: 103.8
NoneNo IPR availableGENE3D4.10.860.130coord: 39..84
e-value: 1.1E-14
score: 55.8
NoneNo IPR availablePANTHERPTHR11885:SF2240S RIBOSOMAL PROTEIN S13coord: 36..142
IPR023029Ribosomal protein S15PPANTHERPTHR11885RIBOSOMAL PROTEIN S15P/S13Ecoord: 36..142
IPR009068S15/NS1, RNA-bindingSUPERFAMILY47060S15/NS1 RNA-binding domaincoord: 82..139

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg024258.1Spg024258.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005730 nucleolus
cellular_component GO:0005840 ribosome
molecular_function GO:0070181 small ribosomal subunit rRNA binding
molecular_function GO:0003735 structural constituent of ribosome