Spg024244 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg024244
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold4: 22212805 .. 22214739 (+)
RNA-Seq ExpressionSpg024244
SyntenySpg024244
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGAAGCTTTAGCTAAATGTGATGATAAGTTAATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGTGCAAACCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGCACATTATGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTCAATTTCCTACAACGTTCATGAAGAATTCGTGACCCACAAATGACTTGAAGTAGATTTAATTTCAGGAGATAGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCATTTCTGGACAAATCGGTTGGGAATCTCGTTTTGATTTCTTCAGGTACGTTGTAGAGTGTTTGAAACTGAAGAGTTTGATGTATAGTACATTAATTTTGGTTAAGTTTTGAGGAAGTTATGAGTGTTGGAAGTTGTGGTACTGAATCGGGAAAATCTGGAAAAGTAGAATGTGAAGTGTGATTTTTAATTCAATTGTTTGGAATTCATGAGCATGGAAGAATAAGACTACCTTTGGTTTTGATGCTCGGTTTTTATTTTTTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCGGAAACTAGCTAAGACAGTGAGTGAAAAAACGAGTTTCGAAAATTGTTTCCAAACGGTTGCTCATGTTTAGATGTTTTACATGCTTTCTATGAATGACACTTGATTTCTATGAACGGTTTCAAGCATAAGTGTTGAGCTTAGATTTTCTAAATGAGGTTTATATACGAGCACGTGGTTAATGACTTTATGAAAAGTAGTTGAAATGATATCTTTTAAAGCAAAGTATGTATTAGCAAGTACTGTTTAAAGATTTTCAGTTTTTCACTAGAAAGTTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGCTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACCGATGCTGTCGTGAGTGCTAGGCAGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGAACTAGTAAATGTTGGTTGTACTGGGCGTGCCCTACACAACGTAAATTAGTCATGTTAGTTAATACGTTTGATGTACTTGATATGCCTTGCTAGATTTTTAATGACGTACCTGCGATGTTATTGAGAAAGCTTTTATCATTGCATGTTTATGTTTAACGCCTTGGTTGAGCAGCTTGATACGTTTAAAGTTTTATCACGTGTTCTGATTTCCGAATGTACAGTTTTAAATTTAGTCACTCACTAGGCTTCGTAGCTCACCCTCTTTCAAAATGTTTTCCCACTTTTCAGGTAGAGATCGAGCTCCCGGTGCTTGATACACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATATTGTAAATGTTTTGTAAAGATTGGATTATTTAGTCCTAGAGGTCGTGGTTGTATAAACCCCAGTTGAATATGTTTTGGGTTGTGATATCTATATCAGGTTATTTTCCAAACCGAGTTATGTCAGGGCTGCACCTCATGTATGTTAGAGGTTTCCAGGGATTCCGCTGTGTTGTGTTTCATGTAGAATATCTTATATCTATGATTAGTATGTTTATCAGGTTCAACGTTTCAGGAGGGTCAACGGATATCGTTAGAGGAGGACGATGTTCATTGGCTTCACGCCATCTTTCGGACTGAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACACTAACACAGGGGCGTAGGTGCGAGGGTTTTCGCAAACCGTTTCCCATCTGCGTTGGGAAATCTGTTCTGTCATCGTCTGCGGGAGGGTGCAGCTGA

mRNA sequence

ATGAAGGAAGCTTTAGCTAAATGTGATGATAAGTTAATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGTGCAAACCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGCACATTATGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTCAATTTCCTACAACGTACGTTGTAGAGTGTTTGAAACTGAAGAGTTTGATGTATAGTACATTAATTTTGGTAGAGATCGAGCTCCCGGTGCTTGATACACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCAGTTCAACGTTTCAGGAGGGTCAACGGATATCGTTAGAGGAGGACGATGTTCATTGGCTTCACGCCATCTTTCGGACTGAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACACTAACACAGGGGCGTAGGTGCGAGGGTTTTCGCAAACCGTTTCCCATCTGCGTTGGGAAATCTGTTCTGTCATCGTCTGCGGGAGGGTGCAGCTGA

Coding sequence (CDS)

ATGAAGGAAGCTTTAGCTAAATGTGATGATAAGTTAATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGTGCAAACCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGCACATTATGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTCAATTTCCTACAACGTACGTTGTAGAGTGTTTGAAACTGAAGAGTTTGATGTATAGTACATTAATTTTGGTAGAGATCGAGCTCCCGGTGCTTGATACACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCAGTTCAACGTTTCAGGAGGGTCAACGGATATCGTTAGAGGAGGACGATGTTCATTGGCTTCACGCCATCTTTCGGACTGAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACACTAACACAGGGGCGTAGGTGCGAGGGTTTTCGCAAACCGTTTCCCATCTGCGTTGGGAAATCTGTTCTGTCATCGTCTGCGGGAGGGTGCAGCTGA

Protein sequence

MKEALAKCDDKLMVFEMENRAQDFRANQEDLWFSLVFRTLWGVQVESEALFGMVGKLIQFPTTYVVECLKLKSLMYSTLILVEIELPVLDTLPTSAESSSSSSSSTFQEGQRISLEEDDVHWLHAIFRTELAGGPGGGVTLTQGRRCEGFRKPFPICVGKSVLSSSAGGCS
Homology
[Close]
BLAST of Spg024244 vs. NCBI nr
Match: TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 2.8e-08
Identity = 47/106 (44.34%), Postives = 61/106 (57.55%), Query Frame = 0 

Query: 44  QVESEALFGMVGKLIQFPTTYVVECLKLKSLMYSTLILVEIELPVLDTLPTSAESSSSSS 103
           ++ S  L+G V   + FP       L   S++     +VEIELPV DTLPTSAESS S+S
Sbjct: 3   EILSPRLYGTVCTQVIFP-------LSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNS 62

Query: 104 SS---TFQEGQRISL-------EEDDVHWLHAIFRTELAGGPGGGV 140
           S+    + E   + +        EDDV WLHA+FR + AGGPGGGV
Sbjct: 63  STWLELYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Spg024244 vs. NCBI nr
Match: KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 2.8e-08
Identity = 47/106 (44.34%), Postives = 61/106 (57.55%), Query Frame = 0 

Query: 44  QVESEALFGMVGKLIQFPTTYVVECLKLKSLMYSTLILVEIELPVLDTLPTSAESSSSSS 103
           ++ S  L+G V   + FP       L   S++     +VEIELPV DTLPTSAESS S+S
Sbjct: 3   EILSPRLYGTVCTQVIFP-------LSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNS 62

Query: 104 SS---TFQEGQRISL-------EEDDVHWLHAIFRTELAGGPGGGV 140
           S+    + E   + +        EDDV WLHA+FR + AGGPGGGV
Sbjct: 63  STWLELYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Spg024244 vs. NCBI nr
Match: KAA0037515.1 (uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa] >TYK01990.1 uncharacterized protein E5676_scaffold808G001020 [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-07
Identity = 37/60 (61.67%), Postives = 42/60 (70.00%), Query Frame = 0 

Query: 81  LVEIELPVLDTLPTSAESSSSSSSSTFQEGQRISLEEDDVHWLHAIFRTELAGGPGGGVT 140
           +VEIELPV DTLP SAESS S+S S         + EDDV WLH +FR + AGGPGGGVT
Sbjct: 132 IVEIELPVSDTLPMSAESSGSNSRSAG------IVREDDVCWLHVVFRVKTAGGPGGGVT 185

[Close]
BLAST of Spg024244 vs. NCBI nr
Match: TYK14494.1 (uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-07
Identity = 39/78 (50.00%), Postives = 49/78 (62.82%), Query Frame = 0 

Query: 63  TYVVECLKLKSLMYSTLILVEIELPVLDTLPTSAESSSSSSSSTFQEGQRISLEEDDVHW 122
           T V+      S+++    +VEIELPV DTLPTSAESS S+S S         +  DDV W
Sbjct: 15  TQVIFSFSTLSVLHDNDAVVEIELPVADTLPTSAESSESNSRSAG------IVRRDDVCW 74

Query: 123 LHAIFRTELAGGPGGGVT 141
           LH++FR + A GPGGGVT
Sbjct: 75  LHSVFRAKTASGPGGGVT 86

[Close]
BLAST of Spg024244 vs. NCBI nr
Match: KAA0060199.1 (uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa] >TYJ95571.1 uncharacterized protein E5676_scaffold767G00770 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-07
Identity = 41/76 (53.95%), Postives = 49/76 (64.47%), Query Frame = 0 

Query: 65  VVECLKLKSLMYSTLILVEIELPVLDTLPTSAESSSSSSSSTFQEGQRISLEEDDVHWLH 124
           V+  L   S++     +VEIELPV DTLPTSAES  S+S ST        +  DDV WLH
Sbjct: 71  VIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESFESNSRSTG------IVRGDDVCWLH 130

Query: 125 AIFRTELAGGPGGGVT 141
           A+FR + AGGPGGGVT
Sbjct: 131 AVFRAKTAGGPGGGVT 140

[Close]
BLAST of Spg024244 vs. ExPASy TrEMBL
Match: A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-08
Identity = 47/106 (44.34%), Postives = 61/106 (57.55%), Query Frame = 0 

Query: 44  QVESEALFGMVGKLIQFPTTYVVECLKLKSLMYSTLILVEIELPVLDTLPTSAESSSSSS 103
           ++ S  L+G V   + FP       L   S++     +VEIELPV DTLPTSAESS S+S
Sbjct: 3   EILSPRLYGTVCTQVIFP-------LSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNS 62

Query: 104 SS---TFQEGQRISL-------EEDDVHWLHAIFRTELAGGPGGGV 140
           S+    + E   + +        EDDV WLHA+FR + AGGPGGGV
Sbjct: 63  STWLELYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Spg024244 vs. ExPASy TrEMBL
Match: A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-08
Identity = 47/106 (44.34%), Postives = 61/106 (57.55%), Query Frame = 0 

Query: 44  QVESEALFGMVGKLIQFPTTYVVECLKLKSLMYSTLILVEIELPVLDTLPTSAESSSSSS 103
           ++ S  L+G V   + FP       L   S++     +VEIELPV DTLPTSAESS S+S
Sbjct: 3   EILSPRLYGTVCTQVIFP-------LSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNS 62

Query: 104 SS---TFQEGQRISL-------EEDDVHWLHAIFRTELAGGPGGGV 140
           S+    + E   + +        EDDV WLHA+FR + AGGPGGGV
Sbjct: 63  STWLELYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Spg024244 vs. ExPASy TrEMBL
Match: A0A5D3BSA6 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G001020 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.6e-08
Identity = 37/60 (61.67%), Postives = 42/60 (70.00%), Query Frame = 0 

Query: 81  LVEIELPVLDTLPTSAESSSSSSSSTFQEGQRISLEEDDVHWLHAIFRTELAGGPGGGVT 140
           +VEIELPV DTLP SAESS S+S S         + EDDV WLH +FR + AGGPGGGVT
Sbjct: 132 IVEIELPVSDTLPMSAESSGSNSRSAG------IVREDDVCWLHVVFRVKTAGGPGGGVT 185

[Close]
BLAST of Spg024244 vs. ExPASy TrEMBL
Match: A0A5D3BAD1 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00770 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 8.7e-08
Identity = 41/76 (53.95%), Postives = 49/76 (64.47%), Query Frame = 0 

Query: 65  VVECLKLKSLMYSTLILVEIELPVLDTLPTSAESSSSSSSSTFQEGQRISLEEDDVHWLH 124
           V+  L   S++     +VEIELPV DTLPTSAES  S+S ST        +  DDV WLH
Sbjct: 71  VIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESFESNSRSTG------IVRGDDVCWLH 130

Query: 125 AIFRTELAGGPGGGVT 141
           A+FR + AGGPGGGVT
Sbjct: 131 AVFRAKTAGGPGGGVT 140

[Close]
BLAST of Spg024244 vs. ExPASy TrEMBL
Match: A0A5D3CU23 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15G00050 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 8.7e-08
Identity = 39/78 (50.00%), Postives = 49/78 (62.82%), Query Frame = 0 

Query: 63  TYVVECLKLKSLMYSTLILVEIELPVLDTLPTSAESSSSSSSSTFQEGQRISLEEDDVHW 122
           T V+      S+++    +VEIELPV DTLPTSAESS S+S S         +  DDV W
Sbjct: 15  TQVIFSFSTLSVLHDNDAVVEIELPVADTLPTSAESSESNSRSAG------IVRRDDVCW 74

Query: 123 LHAIFRTELAGGPGGGVT 141
           LH++FR + A GPGGGVT
Sbjct: 75  LHSVFRAKTASGPGGGVT 86

The following BLAST results are available for this feature:
BLAST of Spg024244 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK27998.12.8e-0844.34reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0066851.12.8e-0844.34reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0037515.11.4e-0761.67uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa] >TYK... [more]
TYK14494.11.8e-0750.00uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa][more]
KAA0060199.11.8e-0753.95uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa] >TYJ9... [more]
BLAST of Spg024244 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg024244 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DX391.3e-0844.34Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38... [more]
A0A5A7VMG91.3e-0844.34Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
A0A5D3BSA66.6e-0861.67Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3BAD18.7e-0853.95Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3CU238.7e-0850.00Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
BLAST of Spg024244 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg024244.1Spg024244.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
molecular_function GO:0016787 hydrolase activity