Spg024211 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg024211
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	scaffold4: 19325587 .. 19330809 (+)
RNA-Seq Expression	Spg024211
Synteny	Spg024211

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATTATCAAATTTGTTTGGAGCTCTAGGAGAATAGCATGGGTTGTTATTGATGCTGTCGGATCCTCGGGAGGAATTGTCATTCTATGGAATGAATCCATCTTTGATGTTCTGGAAGTTGTTGAAGGTATTTTCTCCCTCTCCATACACCTTACTCTTGCTGATGGGTTTTCTTTCTGGATCACAGGTATCTACGGTCCAAATTCTTCTTATGACAGGAAATTTTTCTGGAAAGAATTAACTGATTTGCAGGCTCTCTGCTCTCCTTATTGGATCCTGGGAGGTGATTTTAACATTACGAGATGGTCTTGGGAAAAATCATCCTTTACAGCCCCCACCCGTGGTATGAGAAAGTTCAATCAGTTTATTGAGACAGCAGCCCTTCACGATATTCTACTCTTTAATGGCAAGTATACTTGGTCTAGCTTCCGCCCAAATCCCACCATGACTCTTATTGACAGATTTCTAATTAGTGATTGCATCCTCACTAAATTTGGTTCGACCAAAGCTCAGAGACTTGAAAGAATCACATCATATCATTATCCTATATGCCTCATATTAGGCAAAGAAAAATGGGGCCCATCCCCTTTTCGTTTCATAAATGCGTGGCTAAATCATCAATCTTTCATGCGCACGGTTGAAGCTTGGTGGTACCAGAATCCTGTACAAGGATGGTCGGGCCACAGTTTTATTCAAAAATTGAAGGGGCTGAAAAGGGAATTAAAGGTTTGGAACCAGCAGATTTTTGGGCAACAAAAGGAGATTAGATCCAAGTTGGGCCATGAACTATCACTTATTGACAACAAGAAGGAAAATGATCAATTAATAGAGTAAGACATCCACAGAAGGTCAGAAATTAAGGCTAAACTGATTGTTCTATCGGCAAATGAAGAGATTATGTGGAGACAAAGATGCAAGGCTAAATGGTTTGTTGAGGGGGACGAAAACACAGCTTTCTTCCACCGTATTGTTGCTGCAAACAGAAGGGAAAATGCTATTGTTGAAATAGTTTCTGCCCCTGGAAGTAGCCTCCTGATTGATGATGATATTGAAAAGGAAATCCTTGATTTTTATAAGCATCTCTCTACCAAAAAAGGCAGTAGAAAACCTCTCCCCATTATTTGTGATTGGAGCCCCATCTCCATTGATCAGACTACTGCCTTAGAGCTTTCACCGAGTCTGAAATTTTTAGAGCAGTTTCTAACTTAGGCACCAACAAGACTCCTGGACCCGATGGTTTTACAGCCGAGTTCTTTAAAAAATCATGGAACATCCTTAAAAAAGACATTATAGGGGTGTTCAATGATTTTTTTAGGAATGGTATCATTAATGCAAATTTAAATGAGACTTTATATATGTCTCATTCCGAAGAAATTGGGAGCAAAAGGAGTGGGTGATTACAGGCCCATAAGCCTCACAACATGCCTCTATAAAGTCATTGCTAGAGTTTTGTCAGAGAGACTGAAGAAAGTCCTTCCACATACGATCACAGGATATCAATCTGCTTTTGTAGAAGACAGACAGATTATGGATGCTTCCCTTATAGCAAACGAACTTATTGATGAGTGGAATAGAAAGAAAAGGAAGGGGGTGGTCATTAAGCTATACATTGAAAAAGCCTTTGACATGGTTGATTGGGACTTTCTTGACGATATCCTTACAACAAAGGGCTTTGGTAAGCGTTGGAGACAATGGATTAGAGGCTGCATCTCTTCTGCAAACTATTCCATTATCATTAACGGTAAGACTAGAGGTAAAATCCAAGCCTCTAAAGGGCTTAGACAAGGAGACCCCCTCTTTCCTTTCTTATTCATCATGGTTGTGGATTGTCTTAGCAGGATGCTTATACAGGCAGAAGATTCTAGATTGATTGAGGGTTTTCATGTGGGAGAAGGCTCAAATGCTCTATCCATCACTCATCTCCAATTTCATGACACCATCTTATTCTCCTCCCCAGATAAGAATCATGTGGATAATCTTTTCAGCACTATTCATTCTTTTGAGGAAGCTTCCGGATTGAATATTAATTGCCACAAAACAGAATTTTTGGGCAATGGCTTAGAATCACAACAGGCATCCGCTTAGGCATCATCCTTTGGTTGCAAGCTAGGAACTTGGTCGATTTCATATCTTGGCCTTCCCTTAAATGGCAATCCTCGCACCAACGGCCAGCCCATTCTTGTTTTTTTAACTCAATATAAAAAAATTAAAAAAAAAAAAGAGTAAAGGCTAGAAAATTGAAGCGGTAAATGGGTATCTTAAAACATAAAAAAAAAAAAGAAAAGAAAAGAAAGAAAGGTGTGGAAAAGTACCCACGCTGAGAGAGAGAGAGATAGATATTAAAGAAAAAAAAAAAGACAAAAGAAGAAGAAAGGAAGCAAGGAACCGTGGGGGAGAGAGAAAGGAGAAGAAGAATCGACTGAAGAGGGAGACGAAGAGATCGAGAGGAAGTTCGGAGAGGAGGTGCGATTTTTGGGGTGTTTGAGCTCAACCACAACGTTTCTCAACGGATTTGGTAAGTTGATTTAGAAGGTTTCTTAGTTTTCTTGCGGTTTTGGCTATGGGTAAGTATGTTATGTGGGTTTTTGTGCGTAAGGAAAGAAGAAGGAAGATGGAATGTGTTGATTGTTGGTTGAAGAGGGAAAACCGAGAGAGGAAGAGAGGTTGAATTATGGGTTTTGTTGTTGTTGGAGATGAAGGCAAAGGAAAAAAAAAATAGTGGGTTGTGAGGTAGGAGATGAAATAGTAGAGAGAGAATTGGTTTAAACAAAAAGGAAAAGTTGGAAAAAAAAACAACAACAATGATGGAAGGAAAGGTGGGAAACGTGAATGGAGTTGGGGAAAAAGAGAAATTTGTGGTTTGATGGAGAAAAGAAGGAATAAATTTAATGGGAAGTTCTACCTTGAGATAATGAAGAGAGAGAAAGGAGGAAAAATGTTTGGGGAATTGAAAAGATAGTATTAAATGGTAGAATGGGACAAAAGAGTACCTAGAATGGGGAGTTGAGAAAGGTTGAAATCCATGGAATGTTTTAAGTATGTGATTAGCTAATTAGTCATTTTAGTTGAACGGGAACTCATACGTTGATTTAATTATTATTTCAGGTCAAACAGAGGTCGGGATGGCCTACAACCCGAATTTCTCTCATCAGTAGTACTGTGAGTGGTTGTTTTAATAATTATTTTCCGATACTAAAAGTACTATACTTATAATCTTGAGAAAACTAGAGTTAAAGCATGTTTAGAGAAAATGATTTAAGTTCCATTGATTTTGATGGTTTTCATAGTTAGAATGTGTGTTTCAGCAGCATTCGAGACATTGTACGCTTATCTGAGATTTTTAGAATGATTTCGTTATTTGGAAACATTGCTTGAGTTTATGAAATGTTATTTTACAAGAGGAAAATGATTTTAGATGAGTTTTGAATAAAGAAATTCATACTAGAAAATAGTTTTACGTCACTAGCTCTACGTACCCTAGGTTACCCATGTGCTGTGTGAATATGTTTCCATAGTACATAGAGAGAAATCCTCGGGATCCACTCCAGTGCATGTAGGCTTCGGGCCATGTGTTGGGGTGGTTAGCCTGAGAGAGATTGTTCTGCGTGCACGTAAGACTAGAGAATTGCTCTATTAAGTGTGGAATGTATTCTATGCTTAGTATGACAGAGTTTGCTCTGCTGTGCGTATTGAGAAGACTCTACGCCGGTATGACTAGAGATAAGGGTACAGGGTTAGTGAGTTCTTGTTGACTCTTTGGTTATGCTTTAAAAGAGTTATTACTGCATTTTCCCTTTTGCGAGCTAAATATTTATGAGTTTCTGAGCTATACGTTCTTCACGATATTTTGTTTAGTTAAGTTAAATATTTCCAAGAACTATTTTCGTAATAAAAAATAAATACCACTCACTGGGCATTAGCTCATTCTTTTCCTTTAAACTTTTTCTACCAGGTAGCGACTGAGTTTCGACAAGCCTACAGAAGCCGATCTTGCCACTCGAGTCCGTGTTTAGAGTACCTTTTGTATGTATATGAGGTTTTGGATGGAGGTTATGTAAAAGTTATTTGTTGTAAAGAGTAGTTGGTTGTAAATTATTGCATCTCGAAGTGTTGGGCTGAATATTGTGGTTGAGACGCCTGTGTCTCTAATCTGGTTTTTGGTTGTGATATAGTTTATTAAATATGCATATATGTCGTTTCTTTTCAGGTGTGTTTTAGCCAAGTTTTAAGGGAAACTCTGCCCAAATTTTTGGTCCCTAGAGAGCCTAAGCGTGGTTAAGAACATGTAGATGGCCATGAGTCCTATAGTTAGTTAGGATTCATTGCCGGCACACCACGTCACTAGGTAGTTAAGAGAGAGTTGGGGCGGGGTGTGTCAGGACTCCAGTGATAAAAAAAGTGGAGTAACGGCTCCAAAATTGGGGGACTTCTAATATTTCTAAAGGAGGAAAACATACGCCCATACAAGCAACATTAGCCAACCTCCCTATCTATTACCTCTCCATTTTTCTTGCTCCAAAGAAGGTTACAAAAGCCATTGAAAAAATGTTTAGAATCTTCCTACGGAGAGGTGGACTTGATAAAAAAGGCAGTCATCTCCTGAAATGGTCTCACATCAAAACTCCCATAGAGGAGGGAGGTTTGGGCCTTTATGATATTCACAATAAGAACATATCCCTCTTAGCCAAGTGGATATGGAGGTTTTACAAAGAAAAGGATGCCATTTGGAGGAAGCTTATTGCTACCAAATACAGAGTCTCCCAAAACAACCTTAAACCGGGTTCGAAATCTATGAGCTCGTCCAGAGGGCCGTGGAAGGCCATTCACAAAATGCAGCATCTTATTTATAACAATGTTGATATTAAAGTGGGTAGAAGAGACAATACCATGTTTTGGGAAGATGTTTGGCATTGGCTAGGTTCCTCGAATCTTCAGTCAAAATTTCCCTCTCTATACCTTTTATCTCTGAAAAAGGAAGCTCAAATTGACGATTTATGGAATCCTTCCTCCAGAGCTTGGAATCTTGATCTGAGAAGAAATCTAAACGAAGAGGAAACCATTGAGTGGGCCATTTTGTCTCATCAGCTATCTAGCTTTTCCTTCAAAGATGAGGAAGATTCTTGGTCGTGGAACCTTGAAAAATCCAGAAATTTCTCCACTAGCTCCCTCACAAAAAAGTTGGCCTCCCGTGAAAACTTCACACATTCTGATCTTCTATAA

mRNA sequence

ATGAAAATTATCAAATTTGTTTGGAGCTCTAGGAGAATAGCATGGGTTGTTATTGATGCTGTCGGATCCTCGGGAGGAATTGTCATTCTATGGAATGAATCCATCTTTGATGTTCTGGAAGTTGTTGAAGGTATTTTCTCCCTCTCCATACACCTTACTCTTGCTGATGGGTTTTCTTTCTGGATCACAGGTATCTACGGTCCAAATTCTTCTTATGACAGGAAATTTTTCTGGAAAGAATTAACTGATTTGCAGGCTCTCTGCTCTCCTTATTGGATCCTGGGAGGTGATTTTAACATTACGAGATGGTCTTGGGAAAAATCATCCTTTACAGCCCCCACCCGTGGTATGAGAAAGTTCAATCAGTTTATTGAGACAGCAGCCCTTCACGATATTCTACTCTTTAATGGCAAGTATACTTGGTCTAGCTTCCGCCCAAATCCCACCATGACTCTTATTGACAGATTTCTAATTAGTGATTGCATCCTCACTAAATTTGGTTCGACCAAAGCTCAGAGACTTGAAAGAATCACATCATATCATTATCCTATATGCCTCATATTAGGCAAAGAAAAATGGGGCCCATCCCCTTTTCGTTTCATAAATGCGTGGCTAAATCATCAATCTTTCATGCGCACGGTTGAAGCTTGGTGGTACCAGAATCCTGTACAAGGATGGTCGGGCCACAGTTTTATTCAAAAATTGAAGGGGCTGAAAAGGGAATTAAAGGTTTGGAACCAGCAGATTTTTGGGCAACAAAAGGAGATTAGATCCAAGTTGGGCCATGAACTATCACTTATTGACAACAAGAAGGAAAATGATCAATTAATAGAGTCAAACAGAGGTCGGGATGGCCTACAACCCGAATTTCTCTCATCAGTAGTACTTATGACAGAGTTTGCTCTGCTGTGCGTATTGAGAAGACTCTACGCCGGTATGACTAGAGATAAGGGTACAGGGTTAGTAGCGACTGAGTTTCGACAAGCCTACAGAAGCCGATCTTGCCACTCGAGTCCGTGTTTAGAGTACCTTTTGTATGTATATGAGGTTTTGGATGGAGGTTATGTAAAAGTTATTTGTTAG

Coding sequence (CDS)

ATGAAAATTATCAAATTTGTTTGGAGCTCTAGGAGAATAGCATGGGTTGTTATTGATGCTGTCGGATCCTCGGGAGGAATTGTCATTCTATGGAATGAATCCATCTTTGATGTTCTGGAAGTTGTTGAAGGTATTTTCTCCCTCTCCATACACCTTACTCTTGCTGATGGGTTTTCTTTCTGGATCACAGGTATCTACGGTCCAAATTCTTCTTATGACAGGAAATTTTTCTGGAAAGAATTAACTGATTTGCAGGCTCTCTGCTCTCCTTATTGGATCCTGGGAGGTGATTTTAACATTACGAGATGGTCTTGGGAAAAATCATCCTTTACAGCCCCCACCCGTGGTATGAGAAAGTTCAATCAGTTTATTGAGACAGCAGCCCTTCACGATATTCTACTCTTTAATGGCAAGTATACTTGGTCTAGCTTCCGCCCAAATCCCACCATGACTCTTATTGACAGATTTCTAATTAGTGATTGCATCCTCACTAAATTTGGTTCGACCAAAGCTCAGAGACTTGAAAGAATCACATCATATCATTATCCTATATGCCTCATATTAGGCAAAGAAAAATGGGGCCCATCCCCTTTTCGTTTCATAAATGCGTGGCTAAATCATCAATCTTTCATGCGCACGGTTGAAGCTTGGTGGTACCAGAATCCTGTACAAGGATGGTCGGGCCACAGTTTTATTCAAAAATTGAAGGGGCTGAAAAGGGAATTAAAGGTTTGGAACCAGCAGATTTTTGGGCAACAAAAGGAGATTAGATCCAAGTTGGGCCATGAACTATCACTTATTGACAACAAGAAGGAAAATGATCAATTAATAGAGTCAAACAGAGGTCGGGATGGCCTACAACCCGAATTTCTCTCATCAGTAGTACTTATGACAGAGTTTGCTCTGCTGTGCGTATTGAGAAGACTCTACGCCGGTATGACTAGAGATAAGGGTACAGGGTTAGTAGCGACTGAGTTTCGACAAGCCTACAGAAGCCGATCTTGCCACTCGAGTCCGTGTTTAGAGTACCTTTTGTATGTATATGAGGTTTTGGATGGAGGTTATGTAAAAGTTATTTGTTAG

Protein sequence

MKIIKFVWSSRRIAWVVIDAVGSSGGIVILWNESIFDVLEVVEGIFSLSIHLTLADGFSFWITGIYGPNSSYDRKFFWKELTDLQALCSPYWILGGDFNITRWSWEKSSFTAPTRGMRKFNQFIETAALHDILLFNGKYTWSSFRPNPTMTLIDRFLISDCILTKFGSTKAQRLERITSYHYPICLILGKEKWGPSPFRFINAWLNHQSFMRTVEAWWYQNPVQGWSGHSFIQKLKGLKRELKVWNQQIFGQQKEIRSKLGHELSLIDNKKENDQLIESNRGRDGLQPEFLSSVVLMTEFALLCVLRRLYAGMTRDKGTGLVATEFRQAYRSRSCHSSPCLEYLLYVYEVLDGGYVKVIC

Homology

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BLAST of Spg024211 vs. NCBI nr
Match: XP_022158956.1 (uncharacterized protein LOC111025405 [Momordica charantia])

HSP 1 Score: 263.5 bits (672), Expect = 2.7e-66
Identity = 128/298 (42.95%), Postives = 186/298 (62.42%), Query Frame = 0


Query: 3   IIKFVWSSRRIAWVVIDAVGSSGGIVILWNESIFDVLEVVEGIFSLSIHLTLADGFSFWI 62
           I+K +WS+  I W  +DA G + GI+ILWN+      E++EG+FSL+I+  L+DGF FW+
Sbjct: 46  IVKSLWSAHGINWSALDASGMASGILILWNDPDLKAAEMIEGVFSLTINFCLSDGFLFWV 105

Query: 63  TGIYGPNSSYDRKFFWKELTDLQALCSPYWILGGDFNITRWSWEKSSFTAPTRGMRKFNQ 122
           +GIYGP+++     FW+EL DL  LC  +WIL GDFN+TRWSWEKS+    T+ M  FN 
Sbjct: 106 SGIYGPSTTEFHYLFWQELLDLSDLCENHWILAGDFNVTRWSWEKSNGRPLTKSMWLFNS 165

Query: 123 FIETAALHDILLFNGKYTWSSFRPNPTMTLIDRFLISDCILTKFGSTKAQRLERITSYHY 182
           FIE ++L D+ L NG++TWS    N + +LID FL+++  + K G   A+R+ R TS H+
Sbjct: 166 FIEDSSLIDVPLTNGQHTWSR---NTSFSLIDCFLLTNGCIDKLGMPIAKRMTRTTSDHF 225

Query: 183 PICLILGKEKWGPSPFRFINAWLNHQSFMRTVEAWWYQNPVQGWSGHSFIQKLKGLKREL 242
           PI L  G+  WG +PFRF N WL+H++F   +E WW   P+ GW GH  + KLK LK  +
Sbjct: 226 PILLDFGQNNWGLTPFRFENMWLSHKTFKPFLETWWGNKPLHGWPGHGLMMKLKSLKYAI 285

Query: 243 KVWNQQIFGQQKEIRSKLGHELSLIDNKKENDQLIESNRGRDGLQ-PEFLSSVVLMTE 300
           K+W  + F      +  L + ++ +D+  E  Q +  ++ R  +Q  E L SVV   E
Sbjct: 286 KLWITEHFRCIHSQKEDLTNLMNSLDD-LEGSQPVTPDQSRARIQAKEDLLSVVAKEE 339

[Close]

BLAST of Spg024211 vs. NCBI nr
Match: XP_022145142.1 (uncharacterized protein LOC111014657 [Momordica charantia])

HSP 1 Score: 240.7 bits (613), Expect = 1.9e-59
Identity = 116/271 (42.80%), Postives = 162/271 (59.78%), Query Frame = 0


Query: 2   KIIKFVWSSRRIAWVVIDAVGSSGGIVILWNESIFDVLEVVEGIFSLSIHLTLADGFSFW 61
           K IK +WSS  IAW  +DA G+SGGI++LW++     +EV+ G FS+S+H  LAD F++W
Sbjct: 45  KFIKSLWSSISIAWASLDASGASGGIILLWDQLSTSAVEVICGHFSISVHFKLADNFTWW 104

Query: 62  ITGIYGPNSSYDRKFFWKELTDLQALCSPYWILGGDFNITRWSWEKSSFTAPTRGMRKFN 121
           +TG+Y P     RK FW+EL DL  LC P W+LG DFNI RWS E SS   P  GM KFN
Sbjct: 105 LTGVYSPVKQKKRKLFWQELFDLNGLCGPIWLLGEDFNIYRWSHETSSANPPQTGMNKFN 164

Query: 122 QFIETAALHDILLFNGKYTWSSFRPNPTMTLIDRFLISDCILTKFGSTKAQRLERITSYH 181
            FI+ A L D  + NG+YTWS+ RP+  ++ I+RFL S     KF     +RL R  S H
Sbjct: 165 HFIDFAGLIDPFMNNGQYTWSNLRPHIVLSRINRFLYSKGWSDKFSHHHIKRLPRACSDH 224

Query: 182 YPICLILGKEKWGPSPFRFINAWLNHQSFMRTVEAWWYQNPVQGWSGHSFIQKLKGLKRE 241
           YPI L    ++WG  PFR  N WL  + F + +EA W      G+ G++ I+KL  L ++
Sbjct: 225 YPILLEPPNQQWGHCPFRLENLWLQDKHFQQHIEAIWSSGSSDGYLGYALIKKLNTLAQD 284

Query: 242 LKVWNQQIFGQQKEIRSKLGHELSLIDNKKE 273
           +K   +         ++K+  ++  ID ++E
Sbjct: 285 IKRLRKNFGPNIPREKAKIMEKILSIDKQEE 315

[Close]

BLAST of Spg024211 vs. NCBI nr
Match: BBH07150.1 (TatD related DNase [Prunus dulcis])

HSP 1 Score: 236.9 bits (603), Expect = 2.7e-58
Identity = 121/292 (41.44%), Postives = 165/292 (56.51%), Query Frame = 0


Query: 2   KIIKFVWSSRRIAWVVIDAVGSSGGIVILWNESIFDVLEVVEGIFSLSIHLTLADGFSFW 61
           +++  VW SR   WV   ++G SGGI +LWN     V++ + G FS+SI +    G  +W
Sbjct: 33  QLVTGVWGSRFKEWVFSPSLGRSGGIAVLWNSQSVSVIDSMVGEFSVSIRIVENIGTDWW 92

Query: 62  ITGIYGPNSSYDRKFFWKELTDLQALCSPYWILGGDFNITRWSWEKSSFTAPTRGMRKFN 121
           ++GIYGP    +R  FW+EL DL   C   W LGGDFN+ R+S EKS+    T+ MR FN
Sbjct: 93  LSGIYGPCRQRERISFWEELADLYGYCGDKWCLGGDFNVVRFSAEKSNEGRVTKSMRDFN 152

Query: 122 QFIETAALHDILLFNGKYTWSSFRPNPTMTLIDRFLISDCILTKFGSTKAQRLERITSYH 181
            FI+   L D  L N  +TWS+ R N     +DRFL+S      F   + + L RITS H
Sbjct: 153 DFIQETNLRDPNLLNASFTWSNLRENAVCRRLDRFLVSGSWEDHFPHYRHKALPRITSDH 212

Query: 182 YPICLILGKEKWGPSPFRFINAWLNHQSFMRTVEAWWYQNPVQGWSGHSFIQKLKGLKRE 241
            PI L   + KWGPSPFRF N WL H  F R ++ WW ++   GW G+ F+ +LK LK +
Sbjct: 213 CPIELDTSRVKWGPSPFRFENMWLKHPDFKRKIKLWWDEDQTPGWEGYKFMSRLKMLKSK 272

Query: 242 LKVWNQQIFGQ-QKEIRSKLGHEL--SLIDNKKENDQLIESNR----GRDGL 287
           LKVW+++ FG  ++++R      L   L   +K N    ESN     G DGL
Sbjct: 273 LKVWSKEEFGDVERDLREAEARLLIGDLAQKRKSNGAKEESNENAGWGVDGL 324

[Close]

BLAST of Spg024211 vs. NCBI nr
Match: VVA20479.1 (Hypothetical predicted protein, partial [Prunus dulcis])

HSP 1 Score: 235.0 bits (598), Expect = 1.0e-57
Identity = 115/283 (40.64%), Postives = 161/283 (56.89%), Query Frame = 0


Query: 2   KIIKFVWSSRRIAWVVIDAVGSSGGIVILWNESIFDVLEVVEGIFSLSIHLTLADGFSFW 61
           +++  VW SR   WV   ++G SGGI +LWN     V++ + G FS+SI +    G  +W
Sbjct: 52  QLVTGVWGSRFKEWVFSPSLGRSGGIAVLWNSQSVSVIDSMVGDFSVSIRIVENIGTDWW 111

Query: 62  ITGIYGPNSSYDRKFFWKELTDLQALCSPYWILGGDFNITRWSWEKSSFTAPTRGMRKFN 121
           ++GIYGP    +R  FW+EL DL   C   W LGGDFN+ R+S EKS+    T+ MR FN
Sbjct: 112 LSGIYGPCRQRERISFWEELADLYGYCGDKWCLGGDFNVVRFSAEKSNEGRVTKSMRDFN 171

Query: 122 QFIETAALHDILLFNGKYTWSSFRPNPTMTLIDRFLISDCILTKFGSTKAQRLERITSYH 181
            FI+   L D  L N  +TWS+ R N     +DRFL+S      F   + + L RITS H
Sbjct: 172 DFIQETNLRDPNLLNASFTWSNLRENAVCRRLDRFLVSGSWEDHFPHYRHKALPRITSDH 231

Query: 182 YPICLILGKEKWGPSPFRFINAWLNHQSFMRTVEAWWYQNPVQGWSGHSFIQKLKGLKRE 241
            PI L   + KWGPSPFRF N WL H  F R ++ WW ++   GW G+ F+ +LK LK +
Sbjct: 232 CPIELDTSRVKWGPSPFRFENMWLKHPDFKRKIKLWWDEDQTPGWEGYKFMSRLKMLKSK 291

Query: 242 LKVWNQQIFGQQKEIRSKLGHELSLIDNKKEN---DQLIESNR 282
           LKVW+++ FG  +    +    L ++D ++     D L+ S R
Sbjct: 292 LKVWSKEEFGDVERDLREAEARLLVLDQREGTEGLDHLLRSER 334

[Close]

BLAST of Spg024211 vs. NCBI nr
Match: RVX15530.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 230.7 bits (587), Expect = 2.0e-56
Identity = 114/267 (42.70%), Postives = 151/267 (56.55%), Query Frame = 0


Query: 2   KIIKFVWSSRRIAWVVIDAVGSSGGIVILWNESIFDVLEVVEGIFSLSIHLTLADGFSFW 61
           + +  VW  +R+ W  + A G+SGGIVILW+ S F+  E V G FS+++     +  SFW
Sbjct: 436 RFVSSVWKGKRVEWAALPACGASGGIVILWDSSKFECTEKVLGSFSVTVKFNSGEEGSFW 495

Query: 62  ITGIYGPNSSYDRKFFWKELTDLQALCSPYWILGGDFNITRWSWEKSSFTAPTRGMRKFN 121
           +T +YGP +   RK FW EL DL  L  P W +GGDFN+ R   EK   T  T  MR F+
Sbjct: 496 LTSVYGPINPLWRKDFWLELQDLYGLTFPRWCVGGDFNVIRRISEKLGETRLTFNMRCFD 555

Query: 122 QFIETAALHDILLFNGKYTWSSFRPNPTMTLIDRFLISDCILTKFGSTKAQRLERITSYH 181
           +FI  + L D  L N  +TWS+ + +P    +DRFL S    T F  +  + L R TS H
Sbjct: 556 EFIRESGLLDPPLRNAAFTWSNMQADPICKRLDRFLFSSEWDTFFSQSFQEALPRWTSDH 615

Query: 182 YPICLILGKEKWGPSPFRFINAWLNHQSFMRTVEAWWYQNPVQGWSGHSFIQKLKGLKRE 241
            PICL     KWGP+PFRF N WL H  F      WW +   +GW GH F++KLK +K +
Sbjct: 616 SPICLETNPLKWGPTPFRFENMWLIHPEFKEKFRVWWQECTGEGWEGHKFMRKLKFVKSK 675

Query: 242 LKVWNQQIFGQQKEIRSKLGHELSLID 269
           LK WN   FG  KE +  +  +LS ID
Sbjct: 676 LKEWNIMTFGDLKERKKLILMDLSRID 702

[Close]

BLAST of Spg024211 vs. ExPASy TrEMBL
Match: A0A6J1E2G6 (uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025405 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.3e-66
Identity = 128/298 (42.95%), Postives = 186/298 (62.42%), Query Frame = 0


Query: 3   IIKFVWSSRRIAWVVIDAVGSSGGIVILWNESIFDVLEVVEGIFSLSIHLTLADGFSFWI 62
           I+K +WS+  I W  +DA G + GI+ILWN+      E++EG+FSL+I+  L+DGF FW+
Sbjct: 46  IVKSLWSAHGINWSALDASGMASGILILWNDPDLKAAEMIEGVFSLTINFCLSDGFLFWV 105

Query: 63  TGIYGPNSSYDRKFFWKELTDLQALCSPYWILGGDFNITRWSWEKSSFTAPTRGMRKFNQ 122
           +GIYGP+++     FW+EL DL  LC  +WIL GDFN+TRWSWEKS+    T+ M  FN 
Sbjct: 106 SGIYGPSTTEFHYLFWQELLDLSDLCENHWILAGDFNVTRWSWEKSNGRPLTKSMWLFNS 165

Query: 123 FIETAALHDILLFNGKYTWSSFRPNPTMTLIDRFLISDCILTKFGSTKAQRLERITSYHY 182
           FIE ++L D+ L NG++TWS    N + +LID FL+++  + K G   A+R+ R TS H+
Sbjct: 166 FIEDSSLIDVPLTNGQHTWSR---NTSFSLIDCFLLTNGCIDKLGMPIAKRMTRTTSDHF 225

Query: 183 PICLILGKEKWGPSPFRFINAWLNHQSFMRTVEAWWYQNPVQGWSGHSFIQKLKGLKREL 242
           PI L  G+  WG +PFRF N WL+H++F   +E WW   P+ GW GH  + KLK LK  +
Sbjct: 226 PILLDFGQNNWGLTPFRFENMWLSHKTFKPFLETWWGNKPLHGWPGHGLMMKLKSLKYAI 285

Query: 243 KVWNQQIFGQQKEIRSKLGHELSLIDNKKENDQLIESNRGRDGLQ-PEFLSSVVLMTE 300
           K+W  + F      +  L + ++ +D+  E  Q +  ++ R  +Q  E L SVV   E
Sbjct: 286 KLWITEHFRCIHSQKEDLTNLMNSLDD-LEGSQPVTPDQSRARIQAKEDLLSVVAKEE 339

[Close]

BLAST of Spg024211 vs. ExPASy TrEMBL
Match: M5VS59 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa016504mg PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 4.1e-60
Identity = 117/283 (41.34%), Postives = 164/283 (57.95%), Query Frame = 0


Query: 2   KIIKFVWSSRRIAWVVIDAVGSSGGIVILWNESIFDVLEVVEGIFSLSIHLTLADGFSFW 61
           +++  VW SR   WV   ++G SGGI +LWN     V++ + G FS+SI +    G  +W
Sbjct: 31  QLVAGVWGSRFKEWVFSPSLGRSGGIAVLWNSQSVSVIDSMVGEFSVSIRIVENIGTDWW 90

Query: 62  ITGIYGPNSSYDRKFFWKELTDLQALCSPYWILGGDFNITRWSWEKSSFTAPTRGMRKFN 121
           ++GIYGP    +R  FW+EL DL   C   W LGGDFN+ R+S EKS+    T+ MR FN
Sbjct: 91  LSGIYGPCRQRERNSFWEELADLYGFCGDKWCLGGDFNVVRFSAEKSNEGRVTKSMRDFN 150

Query: 122 QFIETAALHDILLFNGKYTWSSFRPNPTMTLIDRFLISDCILTKFGSTKAQRLERITSYH 181
            FI+   L D  L N  +TWS+ R N     +DRFL+S      F   + + L RITS H
Sbjct: 151 DFIQETNLRDPNLLNASFTWSNLRENAVCRRLDRFLVSGSWEDHFPHYRHKALPRITSDH 210

Query: 182 YPICLILGKEKWGPSPFRFINAWLNHQSFMRTVEAWWYQNPVQGWSGHSFIQKLKGLKRE 241
            PI L   + KWGPSPFRF N WLNH  FMR ++ WW ++ + GW G+ F+ +LK LK +
Sbjct: 211 CPIELDTSRVKWGPSPFRFENMWLNHPDFMRKIKLWWGEDQIPGWEGYKFMTRLKMLKSK 270

Query: 242 LKVWNQQIFGQQKEIRSKLGHELSLIDNKKEN---DQLIESNR 282
           LKVW+++ FG  +    +    L ++D ++     D L+ S R
Sbjct: 271 LKVWSKEEFGDVERDLREAEARLLVLDQREGTEGLDHLLRSER 313

[Close]

BLAST of Spg024211 vs. ExPASy TrEMBL
Match: M5WJ76 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa015871mg PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 7.1e-60
Identity = 116/283 (40.99%), Postives = 164/283 (57.95%), Query Frame = 0


Query: 2   KIIKFVWSSRRIAWVVIDAVGSSGGIVILWNESIFDVLEVVEGIFSLSIHLTLADGFSFW 61
           +++  VW SR   WV   ++G SGGI +LWN     V++ + G FS+SI +    G  +W
Sbjct: 367 QLVAGVWGSRFKEWVFSPSLGRSGGIAVLWNSQSVSVIDSMVGEFSVSIRIEENIGTDWW 426

Query: 62  ITGIYGPNSSYDRKFFWKELTDLQALCSPYWILGGDFNITRWSWEKSSFTAPTRGMRKFN 121
           ++GIYGP    +R  FW+EL DL   C   W LGGDFN+ R+S EKS+    T+ MR FN
Sbjct: 427 LSGIYGPCRQRERNSFWEELADLYGYCGDMWCLGGDFNVVRFSAEKSNEGRVTKSMRDFN 486

Query: 122 QFIETAALHDILLFNGKYTWSSFRPNPTMTLIDRFLISDCILTKFGSTKAQRLERITSYH 181
            FI+   L D +L N  +TWS+ R N     +DRFL+S      F   + + L RITS H
Sbjct: 487 DFIQETNLRDPILLNASFTWSNLRENAVCRRLDRFLVSGSWEEHFPHYRHKALPRITSDH 546

Query: 182 YPICLILGKEKWGPSPFRFINAWLNHQSFMRTVEAWWYQNPVQGWSGHSFIQKLKGLKRE 241
            PI L   + KWGPSPFRF N WLNH  F R ++ WW ++ + GW G+ F+ +LK LK +
Sbjct: 547 CPIELDTSRVKWGPSPFRFENMWLNHPDFKRKIKLWWGEDQIPGWEGYKFMTRLKMLKSK 606

Query: 242 LKVWNQQIFGQQKEIRSKLGHELSLIDNKKEN---DQLIESNR 282
           LKVW+++ FG  +    +    L ++D ++     D L+ S R
Sbjct: 607 LKVWSKEEFGDVERDLREAEARLLVLDQREGTEGLDHLLRSER 649

[Close]

BLAST of Spg024211 vs. ExPASy TrEMBL
Match: A0A6J1CVN2 (uncharacterized protein LOC111014657 OS=Momordica charantia OX=3673 GN=LOC111014657 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 9.2e-60
Identity = 116/271 (42.80%), Postives = 162/271 (59.78%), Query Frame = 0


Query: 2   KIIKFVWSSRRIAWVVIDAVGSSGGIVILWNESIFDVLEVVEGIFSLSIHLTLADGFSFW 61
           K IK +WSS  IAW  +DA G+SGGI++LW++     +EV+ G FS+S+H  LAD F++W
Sbjct: 45  KFIKSLWSSISIAWASLDASGASGGIILLWDQLSTSAVEVICGHFSISVHFKLADNFTWW 104

Query: 62  ITGIYGPNSSYDRKFFWKELTDLQALCSPYWILGGDFNITRWSWEKSSFTAPTRGMRKFN 121
           +TG+Y P     RK FW+EL DL  LC P W+LG DFNI RWS E SS   P  GM KFN
Sbjct: 105 LTGVYSPVKQKKRKLFWQELFDLNGLCGPIWLLGEDFNIYRWSHETSSANPPQTGMNKFN 164

Query: 122 QFIETAALHDILLFNGKYTWSSFRPNPTMTLIDRFLISDCILTKFGSTKAQRLERITSYH 181
            FI+ A L D  + NG+YTWS+ RP+  ++ I+RFL S     KF     +RL R  S H
Sbjct: 165 HFIDFAGLIDPFMNNGQYTWSNLRPHIVLSRINRFLYSKGWSDKFSHHHIKRLPRACSDH 224

Query: 182 YPICLILGKEKWGPSPFRFINAWLNHQSFMRTVEAWWYQNPVQGWSGHSFIQKLKGLKRE 241
           YPI L    ++WG  PFR  N WL  + F + +EA W      G+ G++ I+KL  L ++
Sbjct: 225 YPILLEPPNQQWGHCPFRLENLWLQDKHFQQHIEAIWSSGSSDGYLGYALIKKLNTLAQD 284

Query: 242 LKVWNQQIFGQQKEIRSKLGHELSLIDNKKE 273
           +K   +         ++K+  ++  ID ++E
Sbjct: 285 IKRLRKNFGPNIPREKAKIMEKILSIDKQEE 315

[Close]

BLAST of Spg024211 vs. ExPASy TrEMBL
Match: M5WPQ5 (Reverse transcriptase domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_ppa016677mg PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 9.2e-60
Identity = 116/283 (40.99%), Postives = 164/283 (57.95%), Query Frame = 0


Query: 2   KIIKFVWSSRRIAWVVIDAVGSSGGIVILWNESIFDVLEVVEGIFSLSIHLTLADGFSFW 61
           +++  VW SR   WV   ++G SGGI +LWN     V++ + G FS+SI +    G  +W
Sbjct: 313 QLVAGVWGSRFKEWVFSPSLGRSGGIAVLWNSQSVSVIDSMVGEFSVSIRIVENIGTDWW 372

Query: 62  ITGIYGPNSSYDRKFFWKELTDLQALCSPYWILGGDFNITRWSWEKSSFTAPTRGMRKFN 121
           ++GIYGP    +R  FW+EL DL   C   W LGGDFN+ R+S EKS+    T+ MR FN
Sbjct: 373 LSGIYGPCRQRERNSFWEELADLYGYCGDKWCLGGDFNVVRFSAEKSNEGRVTKSMRDFN 432

Query: 122 QFIETAALHDILLFNGKYTWSSFRPNPTMTLIDRFLISDCILTKFGSTKAQRLERITSYH 181
            FI+   L D +L N  +TWS+ R N     +DRFL+S      F   + + L RITS H
Sbjct: 433 DFIQETNLRDPILLNASFTWSNLRENAVCRRLDRFLVSGSWEEHFPHYRHKALPRITSDH 492

Query: 182 YPICLILGKEKWGPSPFRFINAWLNHQSFMRTVEAWWYQNPVQGWSGHSFIQKLKGLKRE 241
            PI L   + KWGPSPFRF N WLNH  F R ++ WW ++ + GW G+ F+ +LK LK +
Sbjct: 493 CPIELDSSRVKWGPSPFRFENMWLNHPDFKRKIKLWWGEDQIPGWEGYKFMTRLKMLKSK 552

Query: 242 LKVWNQQIFGQQKEIRSKLGHELSLIDNKKEN---DQLIESNR 282
           LKVW+++ FG  +    +    L ++D ++     D L+ S R
Sbjct: 553 LKVWSKEEFGDVERDLREAEARLLVLDQREGTEGLDHLLRSER 595

The following BLAST results are available for this feature:

BLAST of Spg024211 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158956.1	2.7e-66	42.95	uncharacterized protein LOC111025405 [Momordica charantia]	[more]
XP_022145142.1	1.9e-59	42.80	uncharacterized protein LOC111014657 [Momordica charantia]	[more]
BBH07150.1	2.7e-58	41.44	TatD related DNase [Prunus dulcis]	[more]
VVA20479.1	1.0e-57	40.64	Hypothetical predicted protein, partial [Prunus dulcis]	[more]
RVX15530.1	2.0e-56	42.70	putative ribonuclease H protein [Vitis vinifera]	[more]

BLAST of Spg024211 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg024211 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E2G6	1.3e-66	42.95	uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
M5VS59	4.1e-60	41.34	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=...	[more]
M5WJ76	7.1e-60	40.99	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=...	[more]
A0A6J1CVN2	9.2e-60	42.80	uncharacterized protein LOC111014657 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
M5WPQ5	9.2e-60	40.99	Reverse transcriptase domain-containing protein OS=Prunus persica OX=3760 GN=PRU...	[more]

BLAST of Spg024211 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 235..255
None	No IPR available	PANTHER	PTHR33710	BNAC02G09200D PROTEIN	coord: 49..281
None	No IPR available	PANTHER	PTHR33710:SF32	SUBFAMILY NOT NAMED	coord: 49..281
IPR005135	Endonuclease/exonuclease/phosphatase	PFAM	PF14529	Exo_endo_phos_2	coord: 65..185 e-value: 4.3E-7 score: 29.8
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 4..188 e-value: 7.7E-24 score: 86.7
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 13..188

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg024211.1	Spg024211.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0003824	catalytic activity