Spg024182 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg024182
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Locationscaffold4: 19018103 .. 19022786 (+)
RNA-Seq ExpressionSpg024182
SyntenySpg024182
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAGATCTTGCGCGGACAGCAGCTTGAAGTGTCGTTCCTTGCGTTTTTGCCTCTGTCCAGCAGCTATTTCGGGCGTTTTCGAGGTCGTTTGGCATTTTTGGTAAGTCTAATCTCTTACCCATGCCCTCTTTAGGCCTTTAGCTAAGTTTAAGCGAATGCCCAATCGATATGGACTCCGTATTTAAGGTTTTAAGTCTGATCAGTTGCTGTCCAGTGCCGTCTTTGCTCAGTTCGTGAGTGGTTCGGCGTCAATTAGCGTTTTCGGTAAGTTTAGTCCTTACCCATTCTTGTTTAGTGCTTTTAAATGGAATGCCCATTAGTATTAGGTGCTGGAAAATTGAGCTTGGTTTGATTTTCTGATCTGCAGCGCCATCTAGGTGTTCGTTTAAGTTCGAAACACTTCTGCTTGATCACCCACTGCCCAAGGACTATTCTAGCGCATCGTTAGAGGTTAGAATAACCCGTCTAACGCGGAAGCGAGTCCGTTTGGTAAGTTTCTTTGCTGTCCCTTCGCTTTTAGCGTTAAAGGTTGCTGTCCGTTAGCCATGTTAGCCTTAGAATCATGTTTTTGTTGTTACCCATCGCATAGCTAGGCTCTTAGGTGTTGTCCAAACCCTTAAAGGTCCTAGAGCTAGCATGCATTTAAATGAGTTATCATGGCTGTTTTGGCTAGAAGCTTGTAGTTTTTCAAATGCCCATTAAGTCTCGTTGCCTTAGAATGTTTCCGTTCCATTATAGGTTCTTGAAGCATGAGTTAATGAGCTTTTCCTTTCTGTTTGTGGCTTAAAAAGCATGCTAGAGTAGGCCTCCATTAATTGTCTTAGTCTTAGTAGCGTGCCCGGTCCTTAGGAGTTCTTAGTGTGCTTTAGGTGGGTCGTTTACTTGCTGTCCAGCAGCTGAAAAGCCTTATCTGGAGCCGTTTGGAGAACACCCATTGCCCGTTGTGCCTTAGACATGGTTGCCCATGGTCTAAAGGTTTTGGGTTTTCATTTTGGGGTACGTTTAAAGGCTATCCAATGAAGAAATGAGCTGGGTAAAGTGGTTCTGGCCCTAGTAGCTTATTAGGTCGTTTCCTCTTAGTTTACTCTTTGATGGTAGCATTTTTGGTTGTAGTTCGAGGTGCTTATGGAGCTTGGTGCAAGTGTGCCTCGTTGGTATTTGGAAGCGTGTTTTGTAAGTAGTTTCCACTTGCTGGATCTTGTTTGATTGTGTGAGCATGATGTTTGCTTATGTTTAACCTTGTTCTTGTGTAAAGCATGTTTGTTCTGTATAAATGTACTGAAGTGCTTGTGTGGCGCATGTTATATATGTTGTTTACAATCGTTCTAAATTGCTTGAGATGAGCTTATTTTGTTTAGTGCTTGGGATAAGCATGTGTGTTATTGTGATAAGCATGATTTGCTGAGTTGTGGTTGTTGTCTAGCATGATGTATTGGGTGTCAAGCATGTTGGTTAGGCTAGCTTGTGTCATGGGATGTGTAGCATAAGGCTAGCGGTAGCGTTGCATGACGCTTAATTCATGTGTAGATGCGCAGCGTGGCGCGTAATTCACGTGTTTGGTTTAGCGTAGCATGACGCGTAATGCATGCGAGTGGTTGCGTAGCATGGCGCGTAATGCATGCGAGTGGTTTTACATAGCATGGCGCGTAATGCATGCGAAAGGATTTGCGTAGCGTGGCGCGTAACGCACGTGTTGGTTGGCGTAGCATGGCGCGTAATTCATGTGTTAGGTGCGGAGCATGACGCGTAAATCATGTGTGGTCTAGTACAGTGTGGGTGCATAGTGTGGGAGGCATATGCATAATGTGGTTTTGGTGCTTGTGAGCATGTTGTTGGTTTATTGCTTTGAGAGCATGATGAGTTTTTACTGCTTTTGGAAGCATGATGTATGCGTGTGAGAAGCATGTTGTTTGCCTTCTTTGTTAATGAAATGTCTTTATGATTCTGCTGCATGGTTTTTAGTTATTTTATGTGTTGATATGGTATGGCTTGTCTAGAGGAGATAGGTTGTGAAATCTGACTGAAGTTTGGTGGAGTTTGGCTTTCCTTGTATATTCAGAAGTGATAAAAGTCTTTAGCAGATGTTGTAAAATTTTGGGGTAACCAGCTTTACGCCGTTATGCTGCCGAAATTTTCGGTACATTCGGTCTAAAGAGTTGTCCTAAATGCTTAAGAGTCTAGAATAAGTAGTAGTGCCGCTAGGATAGAGGTTAGAGAACCTGGGGCGTTACATCTATATATGAACGACCATAGGAGAATAAAACACCAATCACCCTACATCCGACACCACATTAGGCAACTAGCATTCTTCAGGCTTGTACACGAGTCTGACTTACGTTGTCGAGAGAGTACAAGGATGGACAGAAGATGTTTTGCCATACTTTGCACCTTATTAAAAATAGTTGCCGGTTTATCCAGTACGGAGGTCGTAGATGTAGAAGAGATGGTTGCCATGTTCTTGCACATTGTAGCCCACGACGTTAAGAACCGAGTAGTTCGTACGCAGTTCGCTAGGTCTGGTGAGACAATTTCTAGGCATTTCAACACCGTCCTTCATGCGGTGTTACGATTGCATGATGTTCTCTTACAAAAACCTGAGCCAGTCACAACCTCTTGTACGGATCCAAGGTGGAAATGGTTTCAGGTATAGATAATTAATCATCCAACTTTAGTTAAGCCTAGACTCACTTCTTAGGGTTAGAACCGTGAACCAAATTTTCCTCTATTATGTGGACACAGAATTGCCTCGGTGCTTTAGATGGAACATACATCAAGGTGAATGTTGCTGTTGTCGATCGCCCGAGGTATAGAACAAGGAAAGGTGAAATTGCAACGAACGTGCTTGCTGTCAGTGATACAAAAGGAGACTTCACATTCGTCTTACCAGGGTGGGAAGGGTCTGCCGTTGATTCTCGGGTTCTTAGAGATGCAATATCAAGACCAAACGGACTCACAGTTCCGAAGGGTAAATAATCAGATCTTTTTTCCTTTCACCGTAGAACCCTTAGGAAGGTGTACTGAGCCAATATCACATTCCACAGGCTATTATTATCTGTGCGATGTTGGGTACCCTAACGCAGAGGGTTTCCTGGCACCGTATAGAGGGGAACGTTACCACCTCTCTGAATGGCGTGGTGCGGGGAATGCACCAACTACTCCAAAAGAATTCTTTAACATGAAGCATTCATCTGCGAGGAACGTGATTGAGAGGGCATTTGGTTTTTTGAAAGGAAGGTGGGCTATCCTCCGAGGGAAATCGTACTATCCAGTTTGAATTCAAGGACAAACCATCGCAGCATGCTGCTTACTTCACAATCTTATTAATAGAGAGATGGGTGACCGTGAAATTCCTGATGAGCTAGATGAGGTGGATTCTGCTTCGATTACAACTGATGGTGAGAATATCAATTTCATTGAGACTTCTGACGAATGGAGCCGGTGGAGGGATGAGTTGGCAACACAGATGTTTTCGAATTTGGAGTTACGTAATAGCTAATGGATTAATGTTGCTTTATAGAATTTAGGAATTGCTTCTTCTAGTTCAAGTATTATTCGCTAGTTGTATTAACTGTTTAGATTCTAATTGTTAATGTACTCGTTTATCTTAGTTAATGAGATTTTCATTCATGGTCTTCGTGTACATGATTTTTATTACGTTATAGTTTAGTTTAACATTTCCACACTATGCGTATTCACATAACAGAATGGCCAGTTCGTCAAGAGCTCCAAAACACATTTGGACAAAGAACGAGGACGCGAAGCTGGTGGAGTCCCTCGTGTCCTTAGTTCATGCAGGCGGTTGGAGGTCCGATAATGGGACATTCAAAGCTGGGTATTTGGGGCAGTTAGAGAATTTGATGAGGGAGAAACTGCCTGGACAGGACGTTCCAGCACAGAGCACCATCGACTCTAGGGTTCGCACCTTAAAGAAACAATACCAATCAATTGCAGAGATGTTGGGCCCTAGATGTAGCGGCTTTGGCTGGAATGATGAATTTAAATGCATCGAGGTAGAGAAGGAAACATTTGACTTATGGGTCAAGGTAAGAACGTGTCATTGTGTTAACTTCTCATATTTTATGACTTTCTAACATAAACTTTTGGGTTAATGCAGGGGCATCCTATCGCAAAAGGCATGCGTAACAAGCCTTTCCCGCATTTTGAAGACTTGACATATGTCTTTGGGAAGGATCGAGCCACGGGGAAGGTGTCGAAGGTGATGGGCGAGATGGGATCCAACATGCCAGATGATGAGGTAGACCTCAGTGCATCCCCAGAGAACGACACCCACATCCCGCCGTTCACCATACCTACTGCGAACATGTCAGAGGATGAACCTCGGGGTACGCCAGGCAGTCAAAGTTGCCCAACTGGAAGGTCGTCACGTGGGAGCAAGAGGAAGAGGTTTGGGTCTGACACGCACATAGCAGAAATTGTCACCTCGTTTACAGAGCAACTGAAGTCAATTGCAGAGTGGCCAAAAAAAAACATGCCACAGAGGCTGACTTTCGAGATACAATTGTCACCCACTTGATGGAGGTACCAGAATTGGATAACCAAAAGAGGGTCAAGCTCATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAGCTTCTTCTCCATTCCGGCTGCTCTGAAGTTGGAGTACTGGGAACTCCTCCTGCACAAACATGGCTGA

mRNA sequence

ATGGTTAGATCTTGCGCGGACAGCAGCTTGAAGTGTCGTTCCTTGCGTTTTTGCCTCTGTCCAGCAGCTATTTCGGGCGTTTTCGAGGTCGTTTGGCATTTTTGTGCCGTCTTTGCTCAGTTCGTGAGTGGTTCGGCGTCAATTAGCGTTTTCGCGCCATCTAGGTGTTCGTTTAAGTTCGAAACACTTCTGCTTGATCACCCACTGCCCAAGGACTATTCTAGCGCATCGTTAGAGGTTAGAATAACCCGTCTAACGCGGAAGCGAGTCCGTTTGTGTGCTTTAGGTGGGTCGTTTACTTGCTGTCCAGCAGCTGAAAAGCCTTATCTGGAGCCGTTTGGAGAACACCCATTGCCCGTTTTCGAGGTGCTTATGGAGCTTGGTGCAAGTGTGCCTCGTTGGTATTTGGAAGCGTGTTTTGATTTGCGTAGCGTGGCGCGTAACGCACGTGTTGGTTGGCGTAGCATGGCGCTTATTTTATGTGTTGATATGAATGGCCAGTTCGTCAAGAGCTCCAAAACACATTTGGACAAAGAACGAGGACGCGAAGCTGGTGGAGTCCCTCGTGTCCTTAACCTCAGTGCATCCCCAGAGAACGACACCCACATCCCGCCGTTCACCATACCTACTGCGAACATGTCAGAGGATGAACCTCGGGGTACGCCAGGCAGTCAAAGTTGCCCAACTGGAAGGTCGTCACGTGGGAGCAAGAGGAAGAGAGTGGCCAAAAAAAAACATGCCACAGAGGCTGACTTTCGAGATACAATTGTCACCCACTTGATGGAGGTACCAGAATTGGATAACCAAAAGAGGGTCAAGCTCATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAGCTTCTTCTCCATTCCGGCTGCTCTGAAGTTGGAGTACTGGGAACTCCTCCTGCACAAACATGGCTGA

Coding sequence (CDS)

ATGGTTAGATCTTGCGCGGACAGCAGCTTGAAGTGTCGTTCCTTGCGTTTTTGCCTCTGTCCAGCAGCTATTTCGGGCGTTTTCGAGGTCGTTTGGCATTTTTGTGCCGTCTTTGCTCAGTTCGTGAGTGGTTCGGCGTCAATTAGCGTTTTCGCGCCATCTAGGTGTTCGTTTAAGTTCGAAACACTTCTGCTTGATCACCCACTGCCCAAGGACTATTCTAGCGCATCGTTAGAGGTTAGAATAACCCGTCTAACGCGGAAGCGAGTCCGTTTGTGTGCTTTAGGTGGGTCGTTTACTTGCTGTCCAGCAGCTGAAAAGCCTTATCTGGAGCCGTTTGGAGAACACCCATTGCCCGTTTTCGAGGTGCTTATGGAGCTTGGTGCAAGTGTGCCTCGTTGGTATTTGGAAGCGTGTTTTGATTTGCGTAGCGTGGCGCGTAACGCACGTGTTGGTTGGCGTAGCATGGCGCTTATTTTATGTGTTGATATGAATGGCCAGTTCGTCAAGAGCTCCAAAACACATTTGGACAAAGAACGAGGACGCGAAGCTGGTGGAGTCCCTCGTGTCCTTAACCTCAGTGCATCCCCAGAGAACGACACCCACATCCCGCCGTTCACCATACCTACTGCGAACATGTCAGAGGATGAACCTCGGGGTACGCCAGGCAGTCAAAGTTGCCCAACTGGAAGGTCGTCACGTGGGAGCAAGAGGAAGAGAGTGGCCAAAAAAAAACATGCCACAGAGGCTGACTTTCGAGATACAATTGTCACCCACTTGATGGAGGTACCAGAATTGGATAACCAAAAGAGGGTCAAGCTCATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAGCTTCTTCTCCATTCCGGCTGCTCTGAAGTTGGAGTACTGGGAACTCCTCCTGCACAAACATGGCTGA

Protein sequence

MVRSCADSSLKCRSLRFCLCPAAISGVFEVVWHFCAVFAQFVSGSASISVFAPSRCSFKFETLLLDHPLPKDYSSASLEVRITRLTRKRVRLCALGGSFTCCPAAEKPYLEPFGEHPLPVFEVLMELGASVPRWYLEACFDLRSVARNARVGWRSMALILCVDMNGQFVKSSKTHLDKERGREAGGVPRVLNLSASPENDTHIPPFTIPTANMSEDEPRGTPGSQSCPTGRSSRGSKRKRVAKKKHATEADFRDTIVTHLMEVPELDNQKRVKLMDILFNNMKATESFFSIPAALKLEYWELLLHKHG
Homology
[Close]
BLAST of Spg024182 vs. NCBI nr
Match: XP_038899283.1 (uncharacterized protein LOC120086622 [Benincasa hispida] >XP_038899284.1 uncharacterized protein LOC120086622 [Benincasa hispida] >XP_038899285.1 uncharacterized protein LOC120086622 [Benincasa hispida] >XP_038899286.1 uncharacterized protein LOC120086622 [Benincasa hispida])

HSP 1 Score: 73.9 bits (180), Expect = 2.6e-09
Identity = 53/154 (34.42%), Postives = 74/154 (48.05%), Query Frame = 0 

Query: 181 GREAGGVPRVLNLSASPENDTHIPPFTIPTANMSEDEPRGTPGSQSCPTGRSSRGSKRK- 240
           G  A  VP  ++  AS ++            ++S+DE  GTP         S RGSKRK 
Sbjct: 74  GDMASSVPGCMHEGASTDDSQE--------HDLSQDEFHGTPTGFGFEGDNSLRGSKRKH 133

Query: 241 --------------------------RVAKKKHATEADFRDTIVTHLMEVPELDNQKRVK 300
                                       +KK+HATE + R  +V  L ++P+L  Q+++K
Sbjct: 134 HGYHSELVKVFKNAMDFANDQLKSIAEWSKKQHATEVELRAKVVNKLNDIPKLQTQQKMK 193

Query: 301 LMDILFNNMKATESFFSIPAALKLEYWELLLHKH 308
            M+I+F N+  TESF SIPA +KLEY ELLL  H
Sbjct: 194 FMNIIFRNVHNTESFLSIPADMKLEYCELLLLNH 219

[Close]
BLAST of Spg024182 vs. NCBI nr
Match: XP_038880512.1 (ER membrane protein complex subunit 6 [Benincasa hispida])

HSP 1 Score: 63.5 bits (153), Expect = 3.6e-06
Identity = 31/65 (47.69%), Postives = 48/65 (73.85%), Query Frame = 0 

Query: 243 KKKHATEADFRDTIVTHLMEVPELDNQKRVKLMDILFNNMKATESFFSIPAALKLEYWEL 302
           K+K ATE +    +V+ L ++PEL N+KRV+L+ I+F +++ T+SF SIP ALKL+Y  L
Sbjct: 16  KEKRATEIELCAKVVSQLQDIPELHNRKRVELIQIIFCSVQDTKSFSSIPIALKLDYCNL 75

Query: 303 LLHKH 308
           LL ++
Sbjct: 76  LLQEN 80

[Close]
BLAST of Spg024182 vs. NCBI nr
Match: KAA0061662.1 (protein sym-1 [Cucumis melo var. makuwa] >TYK21137.1 protein sym-1 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 4.7e-06
Identity = 46/123 (37.40%), Postives = 63/123 (51.22%), Query Frame = 0 

Query: 187 VPRVLN--LSASPENDTHIPPFTIPTANMSEDEPRGTPGSQSCPTGRSSRGSKRKRVAKK 246
           VP V N  +S    +D  IP       +MS DE  G    Q+      S GS   R+AK+
Sbjct: 240 VPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGS-NCRLAKE 299

Query: 247 KHATEADFRDTIVTHLMEVPELDNQKRVKLMDILFNNMKATESFFSIPAALKLEYWELLL 306
           K A E +    +   + ++PEL +Q R KLM IL  +++A E F SIP  LKLEY  +LL
Sbjct: 300 KRAMEVE----MCVEVQDIPELRSQDRAKLMQILLRSVEAIEGFLSIPTELKLEYCNILL 357

Query: 307 HKH 308
             +
Sbjct: 360 QNN 357

[Close]
BLAST of Spg024182 vs. NCBI nr
Match: KAA0031678.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 4.7e-06
Identity = 44/123 (35.77%), Postives = 59/123 (47.97%), Query Frame = 0 

Query: 212 NMSEDEPRGTPGSQSCPTGRSSRGSKRKRVA---------------------------KK 271
           +MS DE  G    Q+      S GSKRKR +                           K+
Sbjct: 140 HMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVISSATEFGNDQLKTITDWPKE 199

Query: 272 KHATEADFRDTIVTHLMEVPELDNQKRVKLMDILFNNMKATESFFSIPAALKLEYWELLL 308
           K ATE + R  +V  L ++P+L +Q R KLM ILF +++A E F SIP  LKLEY  +LL
Sbjct: 200 KRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNILL 259

[Close]
BLAST of Spg024182 vs. NCBI nr
Match: KAA0033290.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 6.1e-06
Identity = 51/167 (30.54%), Postives = 72/167 (43.11%), Query Frame = 0 

Query: 168 FVKSSKTHLDKERGREAG-GVPRVLN--LSASPENDTHIPPFTIPTANMSEDEPRGTPGS 227
           F K   T    E   + G  VP + N  +     +D  IP       +MS DE  G    
Sbjct: 329 FGKDRATRARSETFADVGSNVPNMFNGDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAG 388

Query: 228 QSCPTGRSSRGSKRKRVA---------------------------KKKHATEADFRDTIV 287
           Q+      S GSKRK+ +                           K+K ATE + R  ++
Sbjct: 389 QASERKNCSSGSKRKQGSKHYETVEVIKSAIEFGNDQLKAIANWPKEKRATEVELRAEVM 448

Query: 288 THLMEVPELDNQKRVKLMDILFNNMKATESFFSIPAALKLEYWELLL 305
             L ++PEL ++ R KL+ ILF +++A E F SIP   KLEY  +LL
Sbjct: 449 KQLQDIPELQSRDRAKLIQILFRSVEAIEGFLSIPTERKLEYCNILL 495

[Close]
BLAST of Spg024182 vs. ExPASy TrEMBL
Match: A0A5D3DBV3 (Protein sym-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75860G00040 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-06
Identity = 46/123 (37.40%), Postives = 63/123 (51.22%), Query Frame = 0 

Query: 187 VPRVLN--LSASPENDTHIPPFTIPTANMSEDEPRGTPGSQSCPTGRSSRGSKRKRVAKK 246
           VP V N  +S    +D  IP       +MS DE  G    Q+      S GS   R+AK+
Sbjct: 240 VPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGS-NCRLAKE 299

Query: 247 KHATEADFRDTIVTHLMEVPELDNQKRVKLMDILFNNMKATESFFSIPAALKLEYWELLL 306
           K A E +    +   + ++PEL +Q R KLM IL  +++A E F SIP  LKLEY  +LL
Sbjct: 300 KRAMEVE----MCVEVQDIPELRSQDRAKLMQILLRSVEAIEGFLSIPTELKLEYCNILL 357

Query: 307 HKH 308
             +
Sbjct: 360 QNN 357

[Close]
BLAST of Spg024182 vs. ExPASy TrEMBL
Match: A0A5D3BZU3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00280 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-06
Identity = 44/123 (35.77%), Postives = 59/123 (47.97%), Query Frame = 0 

Query: 212 NMSEDEPRGTPGSQSCPTGRSSRGSKRKRVA---------------------------KK 271
           +MS DE  G    Q+      S GSKRKR +                           K+
Sbjct: 140 HMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVISSATEFGNDQLKTITDWPKE 199

Query: 272 KHATEADFRDTIVTHLMEVPELDNQKRVKLMDILFNNMKATESFFSIPAALKLEYWELLL 308
           K ATE + R  +V  L ++P+L +Q R KLM ILF +++A E F SIP  LKLEY  +LL
Sbjct: 200 KRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNILL 259

[Close]
BLAST of Spg024182 vs. ExPASy TrEMBL
Match: A0A5A7SQU2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold472G00070 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.9e-06
Identity = 51/167 (30.54%), Postives = 72/167 (43.11%), Query Frame = 0 

Query: 168 FVKSSKTHLDKERGREAG-GVPRVLN--LSASPENDTHIPPFTIPTANMSEDEPRGTPGS 227
           F K   T    E   + G  VP + N  +     +D  IP       +MS DE  G    
Sbjct: 329 FGKDRATRARSETFADVGSNVPNMFNGDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAG 388

Query: 228 QSCPTGRSSRGSKRKRVA---------------------------KKKHATEADFRDTIV 287
           Q+      S GSKRK+ +                           K+K ATE + R  ++
Sbjct: 389 QASERKNCSSGSKRKQGSKHYETVEVIKSAIEFGNDQLKAIANWPKEKRATEVELRAEVM 448

Query: 288 THLMEVPELDNQKRVKLMDILFNNMKATESFFSIPAALKLEYWELLL 305
             L ++PEL ++ R KL+ ILF +++A E F SIP   KLEY  +LL
Sbjct: 449 KQLQDIPELQSRDRAKLIQILFRSVEAIEGFLSIPTERKLEYCNILL 495

[Close]
BLAST of Spg024182 vs. ExPASy TrEMBL
Match: A0A5A7V8C5 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00690 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.6e-06
Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 0 

Query: 243 KKKHATEADFRDTIVTHLMEVPELDNQKRVKLMDILFNNMKATESFFSIPAALKLEYWEL 302
           K+K ATE +    +V  L ++PEL +Q R KLM ILF +++  E F SIP  LKLEY  +
Sbjct: 366 KEKRATEVELCVEVVKQLQDIPELQSQDRAKLMQILFRSVETIEGFLSIPLELKLEYCNI 425

Query: 303 LLHKH 308
           LL  +
Sbjct: 426 LLQNN 430

[Close]
BLAST of Spg024182 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-05
Identity = 45/133 (33.83%), Postives = 60/133 (45.11%), Query Frame = 0 

Query: 199 NDTHIPPFTIPTANMSEDEPRGTPGSQSCPTGRSSRGSKRKRVA---------------- 258
           +D  IP       +MS DE  G    Q+      S  SKRKR +                
Sbjct: 170 HDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFG 229

Query: 259 -----------KKKHATEADFRDTIVTHLMEVPELDNQKRVKLMDILFNNMKATESFFSI 305
                      K+K A E + R  +V  L ++P+L +Q R KLM ILF +++A E F SI
Sbjct: 230 NEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSI 289

The following BLAST results are available for this feature:
BLAST of Spg024182 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038899283.12.6e-0934.42uncharacterized protein LOC120086622 [Benincasa hispida] >XP_038899284.1 unchara... [more]
XP_038880512.13.6e-0647.69ER membrane protein complex subunit 6 [Benincasa hispida][more]
KAA0061662.14.7e-0637.40protein sym-1 [Cucumis melo var. makuwa] >TYK21137.1 protein sym-1 [Cucumis melo... [more]
KAA0031678.14.7e-0635.77retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon p... [more]
KAA0033290.16.1e-0630.54putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nucleas... [more]
BLAST of Spg024182 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg024182 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DBV32.3e-0637.40Protein sym-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75860G0004... [more]
A0A5D3BZU32.3e-0635.77Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SQU22.9e-0630.54Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7V8C58.6e-0646.15Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7U0H71.9e-0533.83Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Spg024182 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 217..232
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 194..208
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 172..247

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg024182.1Spg024182.1mRNA