Spg024079 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg024079
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Protein cornichon 4-like
Location	scaffold13: 7647875 .. 7649955 (+)
RNA-Seq Expression	Spg024079
Synteny	Spg024079

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGACTGTAAGGCCCTAAATCCAAACCAATTGAAACTCCTTTTTCAGTTTTCAGATACGTTGGGAAATTTTGGTTTTGTTCGAAAATCTCACACAGAAGAGAAAGAAAGCTAGAAGAAGAAGAAGAAGACGACGACGGAGCGCCAGAAGGAAGGGAATGCGGGAGCCATGGAAGACGTCTTTGCTTCGCTCTTCAACTTATTCCTCCTTATATTTCTCATTCCCATTCTCGGCTATCAGGTTCTTTTTCTCTTCGATCTATCGCCAATTGCTTCCAACTTTTTTCTGCCTTGATCGCAAAAATCAAGATACATAGGCATCTTTGATTCTCGCTGTTCGATATTCGCGTTTGATGATATTTTCTGCGAAAATATTGGAGGCTTGCAGTTTACTTCATTTACTTTCTGATGATTGTCGAACTTCCGATCTTTTTTTTAATCATATGTTCGTCTTGATTCTTGGAGTAGGGGAAGTGTACAGAGAGATAGTGGTAAAAAAATGTGTGCGGATGAAAATTACGAGAAGAAATGTGTCGAAGAAGATTCTTTAAGCTTTACCCATTGCCTTTGCAAAAAGAAAATGTAAATATGAAGTCATGATTTGAGTTGCTGCTGTGCTGCAGATTATATGCTTGGTGGATTTGGAGTGTGACTATATCAATCTCTTCGATTCGACCTCTCGGATAAACAGAGTTGTAATGTTGGAATTTATTGCCCAGGCAGTTTTCTGCTTCGTTCATCTTCTAGCACGCCACTGGTTTATGTTTTTGGTGTCTCTTCCATGCCTATGCTTTAATGTCAAACTGTAAGTTTTGGTTTCCCGAATCCATTAACTCAACTGAACAACATTGTATTAGTTTAGGTCTCAGTGATCATCATTTAGTGTTGTTTCTCTCTTTCTGGCAAACATGAAGTTCAACTGGGATGCGAAATTTACTTGAATATTGTAAATTCAAAGTTCAGTTGTTAGTCCCTGATGCATCATATAGAAAAGATCTGCTTTAGGAAGAAATATATTATATAGAACTAATGAACTTTTTTTGGTAGTGGATTCTAACCATCTGGTTCGTTTAAGAGATAGAATTTCTATTTCTTGATAAGATGCCTGATTACAATTTGGTTTGATCTTCTAAGAAAACTACCTGTAATTGATAAAAATGCCTATTTCAGTTGTTTTGATTAATGATTTAATTTGAAACTACCATGGGTTGCCTAATGGTTTTTTTTTGGATATCCATGAGTGTCTGAGCTAGCTTGCATGCACGTCAACTAATCTCATGAAACAACCACCTAGCTCTATTACATTTGGTTGCCAGGAAACACGTAGGATATTAAATTTTAGGTAGGTTGCCTAATGGTTATTTGGACATGAGAAAAAGAGAGAATCCTAGGAGTTCCCTAGCAAACAAATCTTACAGGGTCAATGCACTCACACGTATCAATATATCCACTTTTTTTGTGAGCAAAACCAAGATAAAGTCTGTTCTCTTTCAAGCAAAGTTCTCTTAACTTTGCTTGAGCACACTTGAATTCTGACCTTACCGGATTCCATGTACTTGATCAGTTACAGTTGTAGGCTAAGTTTCTTAATTTATTTGGCTTTCACTTAATGCCATGTTACGAATAATTGCAACTTAAGAACAGAGGTTAGTTAAATCACTTGGGAGGATTCTTACTTTAGTTAAATTTTGAGCACCATTTTCAGGTATATCAGGAATGAACACCTTGCAGATGTGACTGAGATCTATAACCAGATTGGCTGGGAGAAAAAGCAACGTTTTCTGAAGATGATGTATTTTATTACACTTTTATTCATTTCTTTGATATGGTACATATACTGATACTTTTGACATTTCTGATACTGATTTTATATGATCCTTAAACTGCATAACAAGTTCTATTATTTGAATTTGTTTGCAGGCTGATTTGGAGCGTAGGAGCCTTGGAGAAGAACTGGGATAGTTAGTATGTTCTTATGAGTTTACTTATTTTAAAATTTTAACTTATCACTAACACTGTACATAGAGACGTGGATCGTGGACAGAAATAATCAACAACAATGCATCTGCATTACTTCTTTT

mRNA sequence

ATGCGGGAGCCATGGAAGACGTCTTTGCTTCGCTCTTCAACTTATTCCTCCTTATATTTCTCATTCCCATTCTCGGCTATCAGTTTACTTCATTTACTTTCTGATGATTGTCGAACTTCCGATCTTTTTTTTAATCATATGTTCGTCTTGATTCTTGGAGTAGGGGAAGTGTACAGAGAGATAGTGATTATATGCTTGGTGGATTTGGAGTGTGACTATATCAATCTCTTCGATTCGACCTCTCGGATAAACAGAGTTGTAATGTTGGAATTTATTGCCCAGGCAGTTTTCTGCTTCGTTCATCTTCTAGCACGCCACTGGTTTATGTTTTTGGTGTCTCTTCCATGCCTATGCTTTAATGTCAAACTGTATATCAGGAATGAACACCTTGCAGATGTGACTGAGATCTATAACCAGATTGGCTGGGAGAAAAAGCAACGTTTTCTGAAGATGATGTATTTTATTACACTTTTATTCATTTCTTTGATATGGCTGATTTGGAGCGTAGGAGCCTTGGAGAAGAACTGGGATAGTTAG

Coding sequence (CDS)

ATGCGGGAGCCATGGAAGACGTCTTTGCTTCGCTCTTCAACTTATTCCTCCTTATATTTCTCATTCCCATTCTCGGCTATCAGTTTACTTCATTTACTTTCTGATGATTGTCGAACTTCCGATCTTTTTTTTAATCATATGTTCGTCTTGATTCTTGGAGTAGGGGAAGTGTACAGAGAGATAGTGATTATATGCTTGGTGGATTTGGAGTGTGACTATATCAATCTCTTCGATTCGACCTCTCGGATAAACAGAGTTGTAATGTTGGAATTTATTGCCCAGGCAGTTTTCTGCTTCGTTCATCTTCTAGCACGCCACTGGTTTATGTTTTTGGTGTCTCTTCCATGCCTATGCTTTAATGTCAAACTGTATATCAGGAATGAACACCTTGCAGATGTGACTGAGATCTATAACCAGATTGGCTGGGAGAAAAAGCAACGTTTTCTGAAGATGATGTATTTTATTACACTTTTATTCATTTCTTTGATATGGCTGATTTGGAGCGTAGGAGCCTTGGAGAAGAACTGGGATAGTTAG

Protein sequence

MREPWKTSLLRSSTYSSLYFSFPFSAISLLHLLSDDCRTSDLFFNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFISLIWLIWSVGALEKNWDS

Homology

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BLAST of Spg024079 vs. NCBI nr
Match: XP_022152825.1 (protein cornichon homolog 4-like isoform X1 [Momordica charantia] >XP_022152831.1 protein cornichon homolog 4-like isoform X1 [Momordica charantia])

HSP 1 Score: 213.4 bits (542), Expect = 1.6e-51
Identity = 108/137 (78.83%), Postives = 119/137 (86.86%), Query Frame = 0


Query: 41  DLFFNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFV 100
           +LF     +LILG    Y+    ICLVDLE DYINLFDSTSRINRVV+LEF+AQAVFCFV
Sbjct: 10  NLFILIFLLLILG----YQN---ICLVDLESDYINLFDSTSRINRVVLLEFVAQAVFCFV 69

Query: 101 HLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFI 160
           HLLARHWFMFLVSLPCLCFN++LY+R EHLADVTEIYNQIGWEKKQRF+KM+YFI L FI
Sbjct: 70  HLLARHWFMFLVSLPCLCFNIRLYVRKEHLADVTEIYNQIGWEKKQRFVKMVYFIILSFI 129

Query: 161 SLIWLIWSVGALEKNWD 178
           SLIW+I SVGALEKNWD
Sbjct: 130 SLIWMISSVGALEKNWD 139

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BLAST of Spg024079 vs. NCBI nr
Match: XP_008460129.1 (PREDICTED: protein cornichon homolog 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 199.5 bits (506), Expect = 2.4e-47
Identity = 108/141 (76.60%), Postives = 116/141 (82.27%), Query Frame = 0


Query: 41  DLF---FNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVF 100
           DLF   FN + ++ L V   Y+   IICLVDLE DYINLFDSTSRINRVVMLEFI Q VF
Sbjct: 3   DLFAWLFNLLLLIFLIVILGYQ---IICLVDLESDYINLFDSTSRINRVVMLEFITQGVF 62

Query: 101 CFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITL 160
            FVHLLARHWFMFLVSLPCL FNV+LYIR EHLADVTEIYN IG EKKQRFLK++YF+ L
Sbjct: 63  SFVHLLARHWFMFLVSLPCLYFNVRLYIRKEHLADVTEIYNHIGCEKKQRFLKIIYFLVL 122

Query: 161 LFISLIWLIWSVGALEKNWDS 179
           LFISLIW I  VGALEKNWDS
Sbjct: 123 LFISLIWTIRRVGALEKNWDS 140

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BLAST of Spg024079 vs. NCBI nr
Match: XP_022152838.1 (protein cornichon homolog 4-like isoform X2 [Momordica charantia] >XP_022152841.1 protein cornichon homolog 4-like isoform X2 [Momordica charantia])

HSP 1 Score: 179.1 bits (453), Expect = 3.4e-41
Identity = 95/137 (69.34%), Postives = 104/137 (75.91%), Query Frame = 0


Query: 41  DLFFNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFV 100
           +LF     +LILG    Y+    ICLVDLE DYINLFDSTSRINRVV+LEF+AQAVFCFV
Sbjct: 10  NLFILIFLLLILG----YQN---ICLVDLESDYINLFDSTSRINRVVLLEFVAQAVFCFV 69

Query: 101 HLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFI 160
           HLLARHWFMFLVSLPCLCFN++LY+R EHLADVTEIYNQIGWEKKQR             
Sbjct: 70  HLLARHWFMFLVSLPCLCFNIRLYVRKEHLADVTEIYNQIGWEKKQR------------- 122

Query: 161 SLIWLIWSVGALEKNWD 178
               +I SVGALEKNWD
Sbjct: 130 ----MISSVGALEKNWD 122

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BLAST of Spg024079 vs. NCBI nr
Match: XP_008460127.1 (PREDICTED: protein cornichon homolog 4-like isoform X1 [Cucumis melo])

HSP 1 Score: 178.3 bits (451), Expect = 5.7e-41
Identity = 98/129 (75.97%), Postives = 106/129 (82.17%), Query Frame = 0


Query: 41  DLF---FNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVF 100
           DLF   FN + ++ L V   Y+   IICLVDLE DYINLFDSTSRINRVVMLEFI Q VF
Sbjct: 3   DLFAWLFNLLLLIFLIVILGYQ---IICLVDLESDYINLFDSTSRINRVVMLEFITQGVF 62

Query: 101 CFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITL 160
            FVHLLARHWFMFLVSLPCL FNV+LYIR EHLADVTEIYN IG EKKQRFLK++YF+ L
Sbjct: 63  SFVHLLARHWFMFLVSLPCLYFNVRLYIRKEHLADVTEIYNHIGCEKKQRFLKIIYFLVL 122

Query: 161 LFISLIWLI 167
           LFISLIW I
Sbjct: 123 LFISLIWYI 128

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BLAST of Spg024079 vs. NCBI nr
Match: XP_008375821.1 (protein cornichon homolog 4-like [Malus domestica] >TQE03377.1 hypothetical protein C1H46_011028 [Malus baccata])

HSP 1 Score: 145.2 bits (365), Expect = 5.4e-31
Identity = 66/108 (61.11%), Postives = 84/108 (77.78%), Query Frame = 0


Query: 63  IICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVK 122
           ++CLVDLE DYIN +DS+SRIN V++ EFI Q V CF+ L+ARHWFM  ++LP L +NV 
Sbjct: 25  LVCLVDLEYDYINPYDSSSRINNVILPEFIIQGVLCFILLIARHWFMLFMALPHLYYNVN 84

Query: 123 LYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFISLIWLIWSVG 171
           LY+   HL DVTEIYNQ+ WEKKQRFLK+ Y + L  +SL WL+WS+G
Sbjct: 85  LYMTRRHLVDVTEIYNQLSWEKKQRFLKIGYLLVLFILSLFWLLWSIG 132

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BLAST of Spg024079 vs. ExPASy Swiss-Prot
Match: Q84W04 (Protein cornichon homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g12390 PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 6.4e-27
Identity = 62/121 (51.24%), Postives = 82/121 (67.77%), Query Frame = 0


Query: 48  FVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHW 107
           F LI  VG +  ++V  CL DLE DYIN +DS SRIN VV+ EFI Q V C  +LL  HW
Sbjct: 12  FFLIALVGIIVYQLV--CLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHW 71

Query: 108 FMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFISLIWLIW 167
           FM L+ LP L +N  LY + +HL DVTEI+N + WEKK+R  K+ Y +  LF+++ W+I+
Sbjct: 72  FMTLLCLPYLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFWMIY 130

Query: 168 S 169
           S
Sbjct: 132 S 130

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BLAST of Spg024079 vs. ExPASy Swiss-Prot
Match: Q3EDD7 (Probable protein cornichon homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g12340 PE=2 SV=2)

HSP 1 Score: 120.2 bits (300), Expect = 2.4e-26
Identity = 56/106 (52.83%), Postives = 75/106 (70.75%), Query Frame = 0


Query: 63  IICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVK 122
           ++CL DLE DYIN +DS SRIN VV+ EFI Q V C  +LL  HWFM L+ LP L +N  
Sbjct: 17  LVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLPYLYYNFH 76

Query: 123 LYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFISLIWLIWS 169
           LY + +HL DVTEI+N + WEKK+R  K+ Y +  LF+++ W+I+S
Sbjct: 77  LYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFWMIYS 122

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BLAST of Spg024079 vs. ExPASy Swiss-Prot
Match: Q8GWT5 (Protein cornichon homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g62880 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.9e-23
Identity = 55/106 (51.89%), Postives = 72/106 (67.92%), Query Frame = 0


Query: 63  IICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVK 122
           +I L DLE DYIN +DS SRIN VV+ E I Q   C  +L+  HWFM L+ +P L +N  
Sbjct: 25  LISLADLEFDYINPYDSASRINFVVLPESILQGFLCVFYLVTGHWFMALLCVPYLYYNFH 84

Query: 123 LYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFISLIWLIWS 169
           LY R +HL DVTEI+N + WEKK+R  K+ Y I  LF+++ WLI+S
Sbjct: 85  LYSRKQHLIDVTEIFNLLDWEKKKRLFKLAYIILTLFLTIFWLIYS 130

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BLAST of Spg024079 vs. ExPASy Swiss-Prot
Match: Q9SZ74 (Protein cornichon homolog 5 OS=Arabidopsis thaliana OX=3702 GN=At4g12090 PE=2 SV=2)

HSP 1 Score: 106.7 bits (265), Expect = 2.8e-22
Identity = 56/128 (43.75%), Postives = 84/128 (65.62%), Query Frame = 0


Query: 41  DLFFNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFV 100
           D   + +F+  L +  +Y+   + CL DLE D IN +D +SRINR+V+ EF  Q + C  
Sbjct: 6   DWIISFLFLATLIIIVIYQ---LTCLADLEFDRINPYDVSSRINRMVLPEFGLQGLLCLY 65

Query: 101 HLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFI 160
           ++L  HWFM ++SLP L +N++LY++ EHLADVTE+YN   WE+K+R  K+ +    +FI
Sbjct: 66  YILTGHWFMAVLSLPHLFYNIRLYMKREHLADVTELYNTNKWEQKKRVYKIGHIALSIFI 125

Query: 161 SLIWLIWS 169
           +  WLI S
Sbjct: 126 TTYWLIHS 130

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BLAST of Spg024079 vs. ExPASy Swiss-Prot
Match: Q9C7D7 (Protein cornichon homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At3g12180 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-17
Identity = 49/123 (39.84%), Postives = 78/123 (63.41%), Query Frame = 0


Query: 42  LFFNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVH 101
           L+    FV +  V  V+ +  +ICL DLE DY+N F++++RINR+V+ EFI Q   C + 
Sbjct: 7   LWIVSFFVSLALVASVFYQ--VICLTDLEADYLNPFETSTRINRLVIPEFILQGSLCLLF 66

Query: 102 LLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFIS 161
           LL  HW  FLV++P   ++  LY    +L DVTE++  I +EKK R+ K+ +++  LFI 
Sbjct: 67  LLTWHWVFFLVAVPVTVYHAMLYKERRYLIDVTEVFRGISFEKKLRYTKLGFYV-FLFIM 126

Query: 162 LIW 165
           +++
Sbjct: 127 VVF 126

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BLAST of Spg024079 vs. ExPASy TrEMBL
Match: A0A6J1DF23 (protein cornichon homolog 4-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020444 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 7.8e-52
Identity = 108/137 (78.83%), Postives = 119/137 (86.86%), Query Frame = 0


Query: 41  DLFFNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFV 100
           +LF     +LILG    Y+    ICLVDLE DYINLFDSTSRINRVV+LEF+AQAVFCFV
Sbjct: 10  NLFILIFLLLILG----YQN---ICLVDLESDYINLFDSTSRINRVVLLEFVAQAVFCFV 69

Query: 101 HLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFI 160
           HLLARHWFMFLVSLPCLCFN++LY+R EHLADVTEIYNQIGWEKKQRF+KM+YFI L FI
Sbjct: 70  HLLARHWFMFLVSLPCLCFNIRLYVRKEHLADVTEIYNQIGWEKKQRFVKMVYFIILSFI 129

Query: 161 SLIWLIWSVGALEKNWD 178
           SLIW+I SVGALEKNWD
Sbjct: 130 SLIWMISSVGALEKNWD 139

[Close]

BLAST of Spg024079 vs. ExPASy TrEMBL
Match: A0A1S3CD35 (protein cornichon homolog 4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499030 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.2e-47
Identity = 108/141 (76.60%), Postives = 116/141 (82.27%), Query Frame = 0


Query: 41  DLF---FNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVF 100
           DLF   FN + ++ L V   Y+   IICLVDLE DYINLFDSTSRINRVVMLEFI Q VF
Sbjct: 3   DLFAWLFNLLLLIFLIVILGYQ---IICLVDLESDYINLFDSTSRINRVVMLEFITQGVF 62

Query: 101 CFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITL 160
            FVHLLARHWFMFLVSLPCL FNV+LYIR EHLADVTEIYN IG EKKQRFLK++YF+ L
Sbjct: 63  SFVHLLARHWFMFLVSLPCLYFNVRLYIRKEHLADVTEIYNHIGCEKKQRFLKIIYFLVL 122

Query: 161 LFISLIWLIWSVGALEKNWDS 179
           LFISLIW I  VGALEKNWDS
Sbjct: 123 LFISLIWTIRRVGALEKNWDS 140

[Close]

BLAST of Spg024079 vs. ExPASy TrEMBL
Match: A0A6J1DFZ1 (protein cornichon homolog 4-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020444 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.6e-41
Identity = 95/137 (69.34%), Postives = 104/137 (75.91%), Query Frame = 0


Query: 41  DLFFNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFV 100
           +LF     +LILG    Y+    ICLVDLE DYINLFDSTSRINRVV+LEF+AQAVFCFV
Sbjct: 10  NLFILIFLLLILG----YQN---ICLVDLESDYINLFDSTSRINRVVLLEFVAQAVFCFV 69

Query: 101 HLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFI 160
           HLLARHWFMFLVSLPCLCFN++LY+R EHLADVTEIYNQIGWEKKQR             
Sbjct: 70  HLLARHWFMFLVSLPCLCFNIRLYVRKEHLADVTEIYNQIGWEKKQR------------- 122

Query: 161 SLIWLIWSVGALEKNWD 178
               +I SVGALEKNWD
Sbjct: 130 ----MISSVGALEKNWD 122

[Close]

BLAST of Spg024079 vs. ExPASy TrEMBL
Match: A0A1S3CBU0 (protein cornichon homolog 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499030 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.8e-41
Identity = 98/129 (75.97%), Postives = 106/129 (82.17%), Query Frame = 0


Query: 41  DLF---FNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVF 100
           DLF   FN + ++ L V   Y+   IICLVDLE DYINLFDSTSRINRVVMLEFI Q VF
Sbjct: 3   DLFAWLFNLLLLIFLIVILGYQ---IICLVDLESDYINLFDSTSRINRVVMLEFITQGVF 62

Query: 101 CFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITL 160
            FVHLLARHWFMFLVSLPCL FNV+LYIR EHLADVTEIYN IG EKKQRFLK++YF+ L
Sbjct: 63  SFVHLLARHWFMFLVSLPCLYFNVRLYIRKEHLADVTEIYNHIGCEKKQRFLKIIYFLVL 122

Query: 161 LFISLIWLI 167
           LFISLIW I
Sbjct: 123 LFISLIWYI 128

[Close]

BLAST of Spg024079 vs. ExPASy TrEMBL
Match: A0A540MX74 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_011028 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 2.6e-31
Identity = 66/108 (61.11%), Postives = 84/108 (77.78%), Query Frame = 0


Query: 63  IICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVK 122
           ++CLVDLE DYIN +DS+SRIN V++ EFI Q V CF+ L+ARHWFM  ++LP L +NV 
Sbjct: 25  LVCLVDLEYDYINPYDSSSRINNVILPEFIIQGVLCFILLIARHWFMLFMALPHLYYNVN 84

Query: 123 LYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFISLIWLIWSVG 171
           LY+   HL DVTEIYNQ+ WEKKQRFLK+ Y + L  +SL WL+WS+G
Sbjct: 85  LYMTRRHLVDVTEIYNQLSWEKKQRFLKIGYLLVLFILSLFWLLWSIG 132

[Close]

BLAST of Spg024079 vs. TAIR 10
Match: AT1G12390.1 (Cornichon family protein )

HSP 1 Score: 122.1 bits (305), Expect = 4.5e-28
Identity = 62/121 (51.24%), Postives = 82/121 (67.77%), Query Frame = 0


Query: 48  FVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHW 107
           F LI  VG +  ++V  CL DLE DYIN +DS SRIN VV+ EFI Q V C  +LL  HW
Sbjct: 12  FFLIALVGIIVYQLV--CLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHW 71

Query: 108 FMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFISLIWLIW 167
           FM L+ LP L +N  LY + +HL DVTEI+N + WEKK+R  K+ Y +  LF+++ W+I+
Sbjct: 72  FMTLLCLPYLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFWMIY 130

Query: 168 S 169
           S
Sbjct: 132 S 130

[Close]

BLAST of Spg024079 vs. TAIR 10
Match: AT1G12340.1 (Cornichon family protein )

HSP 1 Score: 120.2 bits (300), Expect = 1.7e-27
Identity = 56/106 (52.83%), Postives = 75/106 (70.75%), Query Frame = 0


Query: 63  IICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVK 122
           ++CL DLE DYIN +DS SRIN VV+ EFI Q V C  +LL  HWFM L+ LP L +N  
Sbjct: 17  LVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLPYLYYNFH 76

Query: 123 LYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFISLIWLIWS 169
           LY + +HL DVTEI+N + WEKK+R  K+ Y +  LF+++ W+I+S
Sbjct: 77  LYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFWMIYS 122

[Close]

BLAST of Spg024079 vs. TAIR 10
Match: AT1G62880.1 (Cornichon family protein )

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-24
Identity = 55/106 (51.89%), Postives = 72/106 (67.92%), Query Frame = 0


Query: 63  IICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVK 122
           +I L DLE DYIN +DS SRIN VV+ E I Q   C  +L+  HWFM L+ +P L +N  
Sbjct: 25  LISLADLEFDYINPYDSASRINFVVLPESILQGFLCVFYLVTGHWFMALLCVPYLYYNFH 84

Query: 123 LYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFISLIWLIWS 169
           LY R +HL DVTEI+N + WEKK+R  K+ Y I  LF+++ WLI+S
Sbjct: 85  LYSRKQHLIDVTEIFNLLDWEKKKRLFKLAYIILTLFLTIFWLIYS 130

[Close]

BLAST of Spg024079 vs. TAIR 10
Match: AT4G12090.1 (Cornichon family protein )

HSP 1 Score: 106.7 bits (265), Expect = 2.0e-23
Identity = 56/128 (43.75%), Postives = 84/128 (65.62%), Query Frame = 0


Query: 41  DLFFNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFV 100
           D   + +F+  L +  +Y+   + CL DLE D IN +D +SRINR+V+ EF  Q + C  
Sbjct: 6   DWIISFLFLATLIIIVIYQ---LTCLADLEFDRINPYDVSSRINRMVLPEFGLQGLLCLY 65

Query: 101 HLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFI 160
           ++L  HWFM ++SLP L +N++LY++ EHLADVTE+YN   WE+K+R  K+ +    +FI
Sbjct: 66  YILTGHWFMAVLSLPHLFYNIRLYMKREHLADVTELYNTNKWEQKKRVYKIGHIALSIFI 125

Query: 161 SLIWLIWS 169
           +  WLI S
Sbjct: 126 TTYWLIHS 130

[Close]

BLAST of Spg024079 vs. TAIR 10
Match: AT3G12180.1 (Cornichon family protein )

HSP 1 Score: 91.3 bits (225), Expect = 8.6e-19
Identity = 49/123 (39.84%), Postives = 78/123 (63.41%), Query Frame = 0


Query: 42  LFFNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVH 101
           L+    FV +  V  V+ +  +ICL DLE DY+N F++++RINR+V+ EFI Q   C + 
Sbjct: 7   LWIVSFFVSLALVASVFYQ--VICLTDLEADYLNPFETSTRINRLVIPEFILQGSLCLLF 66

Query: 102 LLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFIS 161
           LL  HW  FLV++P   ++  LY    +L DVTE++  I +EKK R+ K+ +++  LFI 
Sbjct: 67  LLTWHWVFFLVAVPVTVYHAMLYKERRYLIDVTEVFRGISFEKKLRYTKLGFYV-FLFIM 126

Query: 162 LIW 165
           +++
Sbjct: 127 VVF 126

The following BLAST results are available for this feature:

BLAST of Spg024079 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152825.1	1.6e-51	78.83	protein cornichon homolog 4-like isoform X1 [Momordica charantia] >XP_022152831....	[more]
XP_008460129.1	2.4e-47	76.60	PREDICTED: protein cornichon homolog 4-like isoform X2 [Cucumis melo]	[more]
XP_022152838.1	3.4e-41	69.34	protein cornichon homolog 4-like isoform X2 [Momordica charantia] >XP_022152841....	[more]
XP_008460127.1	5.7e-41	75.97	PREDICTED: protein cornichon homolog 4-like isoform X1 [Cucumis melo]	[more]
XP_008375821.1	5.4e-31	61.11	protein cornichon homolog 4-like [Malus domestica] >TQE03377.1 hypothetical prot...	[more]

BLAST of Spg024079 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84W04	6.4e-27	51.24	Protein cornichon homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g12390 PE=1 SV...	[more]
Q3EDD7	2.4e-26	52.83	Probable protein cornichon homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g1234...	[more]
Q8GWT5	1.9e-23	51.89	Protein cornichon homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g62880 PE=2 SV...	[more]
Q9SZ74	2.8e-22	43.75	Protein cornichon homolog 5 OS=Arabidopsis thaliana OX=3702 GN=At4g12090 PE=2 SV...	[more]
Q9C7D7	1.2e-17	39.84	Protein cornichon homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At3g12180 PE=2 SV...	[more]

BLAST of Spg024079 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DF23	7.8e-52	78.83	protein cornichon homolog 4-like isoform X1 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A1S3CD35	1.2e-47	76.60	protein cornichon homolog 4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499...	[more]
A0A6J1DFZ1	1.6e-41	69.34	protein cornichon homolog 4-like isoform X2 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A1S3CBU0	2.8e-41	75.97	protein cornichon homolog 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499...	[more]
A0A540MX74	2.6e-31	61.11	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_011028 PE=3 SV=1	[more]

BLAST of Spg024079 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12390.1	4.5e-28	51.24	Cornichon family protein	[more]
AT1G12340.1	1.7e-27	52.83	Cornichon family protein	[more]
AT1G62880.1	1.4e-24	51.89	Cornichon family protein	[more]
AT4G12090.1	2.0e-23	43.75	Cornichon family protein	[more]
AT3G12180.1	8.6e-19	39.84	Cornichon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003377	Cornichon	SMART	SM01398	Cornichon_2	coord: 43..163 e-value: 9.3E-41 score: 151.4
IPR003377	Cornichon	PFAM	PF03311	Cornichon	coord: 60..162 e-value: 4.0E-32 score: 111.1
None	No IPR available	PANTHER	PTHR12290:SF22	CORNICHON FAMILY PROTEIN	coord: 46..169
None	No IPR available	PANTHER	PTHR12290	CORNICHON-RELATED	coord: 46..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg024079.1	Spg024079.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity