Spg023993 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg023993
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold13: 643748 .. 644110 (-)
RNA-Seq ExpressionSpg023993
SyntenySpg023993
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCAAAGCTATGACCAAGAGGAAGGGCAGGGCGCGGCAGGGTTGCGGTGGGCAACACGTCGGGGGATCCAGTTTCGGAGGCGACGAATGCCGGTGGCACGGCTCGGGGGGAAGAGATCGGGGCGGCTCGTGGCGTGGGGGAGAATGGTGAGGAAGATAAGGCTGAGATGGGTGAGATTGAAATGCATTGCCATGGTGAAGAAGATGAAAAAGTGCTACACAAGCTTGATGAAGGATGTAATGGAAGCAGGAGCACATGCTGACTCATATCAACATAGGCTTCTCTTGGAGTCTTCTTTCGCCTTTCCAATTCTGGGCGTCTCTTTCTCTAAACATTCAACTCATCCTACAACTCCATGA

mRNA sequence

ATGGCTCAAAGCTATGACCAAGAGGAAGGGCAGGGCGCGGCAGGGTTGCGGTGGGCAACACGTCGGGGGATCCAGTTTCGGAGGCGACGAATGCCGGTGGCACGGCTCGGGGGGAAGAGATCGGGGCGGCTCGTGGCGTGGGGGAGAATGGTGAGGAAGATAAGGCTGAGATGGGTGAGATTGAAATGCATTGCCATGGTGAAGAAGATGAAAAAGTGCTACACAAGCTTGATGAAGGATGTAATGGAAGCAGGAGCACATGCTGACTCATATCAACATAGGCTTCTCTTGGAGTCTTCTTTCGCCTTTCCAATTCTGGGCGTCTCTTTCTCTAAACATTCAACTCATCCTACAACTCCATGA

Coding sequence (CDS)

ATGGCTCAAAGCTATGACCAAGAGGAAGGGCAGGGCGCGGCAGGGTTGCGGTGGGCAACACGTCGGGGGATCCAGTTTCGGAGGCGACGAATGCCGGTGGCACGGCTCGGGGGGAAGAGATCGGGGCGGCTCGTGGCGTGGGGGAGAATGGTGAGGAAGATAAGGCTGAGATGGGTGAGATTGAAATGCATTGCCATGGTGAAGAAGATGAAAAAGTGCTACACAAGCTTGATGAAGGATGTAATGGAAGCAGGAGCACATGCTGACTCATATCAACATAGGCTTCTCTTGGAGTCTTCTTTCGCCTTTCCAATTCTGGGCGTCTCTTTCTCTAAACATTCAACTCATCCTACAACTCCATGA

Protein sequence

MAQSYDQEEGQGAAGLRWATRRGIQFRRRRMPVARLGGKRSGRLVAWGRMVRKIRLRWVRLKCIAMVKKMKKCYTSLMKDVMEAGAHADSYQHRLLLESSFAFPILGVSFSKHSTHPTTP
Homology
BLAST of Spg023993 vs. NCBI nr
Match: XP_038891072.1 (uncharacterized protein LOC120080455 [Benincasa hispida])

HSP 1 Score: 185.3 bits (469), Expect = 3.2e-43
Identity = 95/118 (80.51%), Postives = 106/118 (89.83%), Query Frame = 0

Query: 1   MAQSYDQEEGQGAAGLRWATRRGIQFRRRRMPVARLGGKRSGRLVAWGRMVRKIRLRWVR 60
           MAQSY+Q EGQ AAGLRW  RRGIQFRRRRMPVARLGGKRSGR+VAWGRM+RKIRLRWV+
Sbjct: 1   MAQSYEQGEGQPAAGLRWGMRRGIQFRRRRMPVARLGGKRSGRIVAWGRMLRKIRLRWVK 60

Query: 61  LKCIAMVKKMKKCYTSLMKDVMEAGAH---ADSYQHRLLLESSFAFPILGVSFSKHST 116
           +KCIAMVKK+KK YTSLMKD+ME GA+   ADSYQHRLL+E+SFA PILGVS S HS+
Sbjct: 61  VKCIAMVKKIKKYYTSLMKDIMEGGAYGYAADSYQHRLLMETSFAIPILGVSLSTHSS 118

BLAST of Spg023993 vs. NCBI nr
Match: XP_022948735.1 (uncharacterized protein LOC111452314 [Cucurbita moschata] >XP_023523769.1 uncharacterized protein LOC111787905 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.1 bits (466), Expect = 7.0e-43
Identity = 97/117 (82.91%), Postives = 105/117 (89.74%), Query Frame = 0

Query: 1   MAQSYDQEEGQGA-AGLRWATRRGIQFRRRRMPVARLGGKRSGRLVAWGRMVRKIRLRWV 60
           M QS +QEEGQ A AGLRWATR+GIQFRRRRM VARLGGKRSGRLVAWGR +RKIRLRWV
Sbjct: 1   MPQSSEQEEGQQAGAGLRWATRQGIQFRRRRMAVARLGGKRSGRLVAWGRRLRKIRLRWV 60

Query: 61  RLKCIAMVKKMKKCYTSLMKDVMEAGAHADSYQHRLLLESSFAFPILGVSFSKHSTH 117
           +LKCIAMVKK+KK   SLMKD+MEAGA+ DSYQHRLLLE+SFA PILGVSFS HSTH
Sbjct: 61  KLKCIAMVKKVKKYCASLMKDMMEAGAYGDSYQHRLLLETSFAIPILGVSFSTHSTH 117

BLAST of Spg023993 vs. NCBI nr
Match: KAG6581768.1 (hypothetical protein SDJN03_21770, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177.2 bits (448), Expect = 8.6e-41
Identity = 90/115 (78.26%), Postives = 102/115 (88.70%), Query Frame = 0

Query: 1   MAQSYDQEEGQGAAGLRWATRRGIQFRRRRMPVARLGGKRSGRLVAWGRMVRKIRLRWVR 60
           M Q Y+ EEGQ  AGLR  TRRG++FRRRRMPVARLGGKRSGRLVAWGRM+RKIRLRWV+
Sbjct: 1   MGQPYEPEEGQPGAGLRRGTRRGMRFRRRRMPVARLGGKRSGRLVAWGRMLRKIRLRWVK 60

Query: 61  LKCIAMVKKMKKCYTSLMKDVMEAGAHADSYQHRLLLESSFAFPILGVSFSKHST 116
           LKCIAMVKKMK+ YT LMKD++EAGA+A SYQHR+LLE+SFA PILGVS S HS+
Sbjct: 61  LKCIAMVKKMKEYYTRLMKDIIEAGAYAHSYQHRVLLETSFAIPILGVSLSTHSS 115

BLAST of Spg023993 vs. NCBI nr
Match: XP_022956317.1 (uncharacterized protein LOC111458050 [Cucurbita moschata])

HSP 1 Score: 172.2 bits (435), Expect = 2.8e-39
Identity = 91/119 (76.47%), Postives = 102/119 (85.71%), Query Frame = 0

Query: 1   MAQSYDQEEGQGAAGL----RWATRRGIQFRRRRMPVARLGGKRSGRLVAWGRMVRKIRL 60
           M Q Y+ EEGQ  AGL    R  TRRG++FRRRRMPVARLGGKRSGRLVAWGRM+RKIRL
Sbjct: 1   MGQPYEPEEGQPGAGLRRGTRRGTRRGMRFRRRRMPVARLGGKRSGRLVAWGRMLRKIRL 60

Query: 61  RWVRLKCIAMVKKMKKCYTSLMKDVMEAGAHADSYQHRLLLESSFAFPILGVSFSKHST 116
           RWV+LKCIAMVKKMK+ YT LMKD++EAGA+A SYQHRLLLE+SFA PILGVS S HS+
Sbjct: 61  RWVKLKCIAMVKKMKEYYTRLMKDIIEAGAYARSYQHRLLLETSFAIPILGVSLSTHSS 119

BLAST of Spg023993 vs. NCBI nr
Match: KAG7018218.1 (hypothetical protein SDJN02_20086, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.1 bits (427), Expect = 2.3e-38
Identity = 88/115 (76.52%), Postives = 100/115 (86.96%), Query Frame = 0

Query: 1   MAQSYDQEEGQGAAGLRWATRRGIQFRRRRMPVARLGGKRSGRLVAWGRMVRKIRLRWVR 60
           M Q Y+ EEGQ  AGL    RRG++FRRRRMPVARLGGKRSGRLVAWGRM+RKIRLRWV+
Sbjct: 1   MGQPYEPEEGQPGAGL----RRGMRFRRRRMPVARLGGKRSGRLVAWGRMLRKIRLRWVK 60

Query: 61  LKCIAMVKKMKKCYTSLMKDVMEAGAHADSYQHRLLLESSFAFPILGVSFSKHST 116
           LKCIAMVKKMK+ YT LMKD++EAGA+A SYQHR+LLE+SFA PILGVS S HS+
Sbjct: 61  LKCIAMVKKMKEYYTRLMKDIIEAGAYAHSYQHRVLLETSFAIPILGVSLSTHSS 111

BLAST of Spg023993 vs. ExPASy TrEMBL
Match: A0A6J1GAR0 (uncharacterized protein LOC111452314 OS=Cucurbita moschata OX=3662 GN=LOC111452314 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.4e-43
Identity = 97/117 (82.91%), Postives = 105/117 (89.74%), Query Frame = 0

Query: 1   MAQSYDQEEGQGA-AGLRWATRRGIQFRRRRMPVARLGGKRSGRLVAWGRMVRKIRLRWV 60
           M QS +QEEGQ A AGLRWATR+GIQFRRRRM VARLGGKRSGRLVAWGR +RKIRLRWV
Sbjct: 1   MPQSSEQEEGQQAGAGLRWATRQGIQFRRRRMAVARLGGKRSGRLVAWGRRLRKIRLRWV 60

Query: 61  RLKCIAMVKKMKKCYTSLMKDVMEAGAHADSYQHRLLLESSFAFPILGVSFSKHSTH 117
           +LKCIAMVKK+KK   SLMKD+MEAGA+ DSYQHRLLLE+SFA PILGVSFS HSTH
Sbjct: 61  KLKCIAMVKKVKKYCASLMKDMMEAGAYGDSYQHRLLLETSFAIPILGVSFSTHSTH 117

BLAST of Spg023993 vs. ExPASy TrEMBL
Match: A0A6J1GVZ8 (uncharacterized protein LOC111458050 OS=Cucurbita moschata OX=3662 GN=LOC111458050 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.3e-39
Identity = 91/119 (76.47%), Postives = 102/119 (85.71%), Query Frame = 0

Query: 1   MAQSYDQEEGQGAAGL----RWATRRGIQFRRRRMPVARLGGKRSGRLVAWGRMVRKIRL 60
           M Q Y+ EEGQ  AGL    R  TRRG++FRRRRMPVARLGGKRSGRLVAWGRM+RKIRL
Sbjct: 1   MGQPYEPEEGQPGAGLRRGTRRGTRRGMRFRRRRMPVARLGGKRSGRLVAWGRMLRKIRL 60

Query: 61  RWVRLKCIAMVKKMKKCYTSLMKDVMEAGAHADSYQHRLLLESSFAFPILGVSFSKHST 116
           RWV+LKCIAMVKKMK+ YT LMKD++EAGA+A SYQHRLLLE+SFA PILGVS S HS+
Sbjct: 61  RWVKLKCIAMVKKMKEYYTRLMKDIIEAGAYARSYQHRLLLETSFAIPILGVSLSTHSS 119

BLAST of Spg023993 vs. ExPASy TrEMBL
Match: A0A5D3DCV1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45855G00010 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.9e-31
Identity = 80/118 (67.80%), Postives = 93/118 (78.81%), Query Frame = 0

Query: 1   MAQSYDQEEGQGAAGLRWATRRGIQFRRRR-MPVARLGGKRSGRLVAWGRMVRKIRLRWV 60
           MA+SY   + +         R GIQFRRRR M VARLGGKRSGR++AWGR+VRKIRL+WV
Sbjct: 1   MAESYGDHQEE-------LRRHGIQFRRRRKMAVARLGGKRSGRIMAWGRIVRKIRLKWV 60

Query: 61  RLKCIAMVKKMKKCYTSLMKDVMEAGA--HADSYQHRLLLESSFAFPILGVSFSKHST 116
           ++KCI MVKKMKK Y  LMKD+MEAGA  +ADSYQHRLLLE+SFA PILGVS S HS+
Sbjct: 61  KMKCIEMVKKMKKYYKKLMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSS 111

BLAST of Spg023993 vs. ExPASy TrEMBL
Match: A0A0A0LBW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G644780 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.5e-30
Identity = 80/118 (67.80%), Postives = 92/118 (77.97%), Query Frame = 0

Query: 1   MAQSYDQEEGQGAAGLRWATRRGIQF-RRRRMPVARLGGKRSGRLVAWGRMVRKIRLRWV 60
           MA SY+  + +         R GIQF RRRRM VARLGGKRSGR+V WGR+VRKIRL+WV
Sbjct: 1   MAGSYEDHQEE-------LRRCGIQFRRRRRMAVARLGGKRSGRIVGWGRIVRKIRLKWV 60

Query: 61  RLKCIAMVKKMKKCYTSLMKDVMEAGA--HADSYQHRLLLESSFAFPILGVSFSKHST 116
           ++KCI MVKKMKK Y  LMKD+MEAGA  +ADSYQHRLLLE+SFA PILGVS S HS+
Sbjct: 61  KMKCIEMVKKMKKYYKELMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSS 111

BLAST of Spg023993 vs. ExPASy TrEMBL
Match: A0A6J1D3L4 (uncharacterized protein LOC111016963 OS=Momordica charantia OX=3673 GN=LOC111016963 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.3e-23
Identity = 77/128 (60.16%), Postives = 91/128 (71.09%), Query Frame = 0

Query: 1   MAQSYDQEEGQGAAGLRWATRRGIQF-RRRRMPVARLGGKRS----GRLVAWGRMVRKIR 60
           M + Y+ E G    GLR A RRGIQF RRRRMPVARLGG  S    GRL   GRMVRKIR
Sbjct: 28  MGEGYETENG---PGLRCAARRGIQFRRRRRMPVARLGGPGSGSGPGRL---GRMVRKIR 87

Query: 61  LRWVRLKCIAMVKKMKKCYTSLMKDVMEAG---AHADSYQHRLLLESSFAFPILGVSFSK 120
           +RWV+L+C+AMVKKMKK Y  ++KDV+EA    A+ +SYQHR+LLE+SFA PIL  S   
Sbjct: 88  VRWVKLRCLAMVKKMKKWYRKVLKDVIEAQAAVAYPESYQHRVLLETSFAIPILPRSL-- 146

BLAST of Spg023993 vs. TAIR 10
Match: AT1G54120.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14060.1); Has 23 Blast hits to 23 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 75.9 bits (185), Expect = 2.5e-14
Identity = 47/107 (43.93%), Postives = 72/107 (67.29%), Query Frame = 0

Query: 17  RWA-TRRGIQFRRRRMPVARLGGKRSGRLVAWG-----RMVRKIRLRWVRLKCIAMVKKM 76
           RW+ +RR I  RRR+  V RLGGK S   V+ G     +MVR+++LRW++L  + +VKK+
Sbjct: 12  RWSRSRRKIHIRRRKSQVVRLGGKNSA--VSRGGFSLKKMVRRMKLRWLKLHYVRVVKKI 71

Query: 77  KKCYTSLMKDVMEAGAHADSYQHRLLLE-SSFAFPILGVSFSKHSTH 117
           K  Y +L+K+ ++AGA  ++ Q R+ +E ++FA P LG+SFS  S H
Sbjct: 72  KVFYRNLVKEFVDAGAELEAIQQRMAVEAAAFAVPGLGLSFSSFSVH 116

BLAST of Spg023993 vs. TAIR 10
Match: AT3G14060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54120.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 8.4e-10
Identity = 43/112 (38.39%), Postives = 70/112 (62.50%), Query Frame = 0

Query: 13  AAGLRW-ATRRGIQFRRRRMPVARLGGKRSGRLVAWG--RMVRKIRLRWVRLKCIAMVKK 72
           ++  RW ++RR I  RRR+  V RLGGK S    ++   ++V ++RL+W+RL  + +VKK
Sbjct: 11  SSAFRWPSSRRKIYLRRRKPQVVRLGGKNSTPRGSFSLKKVVTRMRLKWLRLYYVRLVKK 70

Query: 73  MKKCYTSLMKDVMEAGAHADSYQHRLLLE-SSFAFPILGVSFSKHSTHPTTP 121
           +K  Y +++K+  EAG  A + Q R+ +E ++FA P LG+SF   S +   P
Sbjct: 71  IKAYYRTIVKEFEEAG--AATIQQRMTVETAAFAAPGLGLSFCPMSGYVDQP 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038891072.13.2e-4380.51uncharacterized protein LOC120080455 [Benincasa hispida][more]
XP_022948735.17.0e-4382.91uncharacterized protein LOC111452314 [Cucurbita moschata] >XP_023523769.1 unchar... [more]
KAG6581768.18.6e-4178.26hypothetical protein SDJN03_21770, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022956317.12.8e-3976.47uncharacterized protein LOC111458050 [Cucurbita moschata][more]
KAG7018218.12.3e-3876.52hypothetical protein SDJN02_20086, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GAR03.4e-4382.91uncharacterized protein LOC111452314 OS=Cucurbita moschata OX=3662 GN=LOC1114523... [more]
A0A6J1GVZ81.3e-3976.47uncharacterized protein LOC111458050 OS=Cucurbita moschata OX=3662 GN=LOC1114580... [more]
A0A5D3DCV13.9e-3167.80Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LBW71.5e-3067.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G644780 PE=4 SV=1[more]
A0A6J1D3L41.3e-2360.16uncharacterized protein LOC111016963 OS=Momordica charantia OX=3673 GN=LOC111016... [more]
Match NameE-valueIdentityDescription
AT1G54120.12.5e-1443.93unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G14060.18.4e-1038.39unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34788:SF4F15I1.22coord: 1..115
NoneNo IPR availablePANTHERPTHR34788F15I1.22coord: 1..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg023993.1Spg023993.1mRNA