Spg023991 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg023991
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Protein FAR1-RELATED SEQUENCE 2-like
Location	scaffold13: 10000643 .. 10002169 (-)
RNA-Seq Expression	Spg023991
Synteny	Spg023991

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAACATCGTTGATGGGATGCCTAGCGATATTTGTGTTGTTGTCGACCACTGCGAAACCAAGGTTTTGGCTTCAAATATAGTATCTTTGCAGCTCGATAACAACAAATCATCCTCGCAGCCAAAAAGTAGTGGAAAAAATTATAAGATTATTGACTACATTGATATTGATCCGCTGTCATCTTCAGTACCACTGAGTGAAGATTCAGTTTTTCAAAGCAATGACCAGTTGAAGAAAGCAATATACTTACTTGCTTTAAAGAATAGTTTTTAGCTACGTACCATTAAATCAAATCAGAAATCATTTGTTGTTGGGTGTAAGGACATTTCATGTTGTTGGTACATCTGATCATCTCGATATTTAGATGGAGACCTGTGGATGGTCCGTAAATTCAGGGACAAGCACACTCTCATCACGAATGCTCCATTGATATTGTAAAAAATGACCACAGACAAGCAACATCCTAGATTGTAGGGGAGTGCGTGAATTCCTTTTTAAAGATAAATGACAAGATCCAAATTCGCCCTCGCGACATTGTTGATTACATGAGGATAATACATGGTGTTAACATTAGCTATGACAATGCTTGGAGGGGTCGTGAACTTGCACTCACGTCTATTAGGGGATCGTCTGAATCTTCATATGCACTAATTCCAGCATTCTCGGCAGCCTTAATTGAGAAAAATCCAGGTCAAATATCTTACACATTACACACACTGCCCAACCATCCACATATACATTGTATTTGTTAGTATATGATCGTTTAACATGCGGTACTATCCGGTATGAACAGTTGCCGAAATTTTGTTTGTTTTGCGGTTTAATTGGCCATTTATCGAAGGACTGTGGTGAATTCTACAAATTTGCCCGATCACATAGTTTTTCTCCCCAATATGGAGAGTGGTTACACTATGGTGGTAAGGGTGGTTTTGTTGCACATTCACCAGCTAAGGAACTACAAGTGGAGAAAGGGGTGCTTTAATCCCCTAGGGTGCCAAAATTTTCTCAATCCCTTGTAGCCATGGATACAGGTACATCTACAGATTCTCCCCTGGTTACGCCTCGTAGCTCTGCTCGGAATTATGGATCAGAGGCGGCGACAGGTGCAGACCAGCAGGTTCTCGAAGGGCCGGCTCACTACTCGCTGTCCAGGGGGCCGACGTCGATGGTGAGTCCGGTGAAGGCAGGCGTGGCGGTGTGGTGGCTCGACCGGTTATGATTCCTTCGTGAAGGTGTACATATTACACATGCAGAAGCAATTGAAGATCGAAAGCACTTAAGACATTCAATTTTACTCCTAAAGCATGCATGTTCTAGAAAAGACAGAATAGAGAGTTTAGAAAACACCAACCTTTGTAGCTCACTTATGTTGAACTCCTTGTGGTGTTTGCCTCTCCTATGCTCCTTGGACAACCTCTAGAGTCTTCCCTACTATACTCCGGGCCAAGAACGACTTGTGGGAGTCTATATAAGATAGGGAATGGGAAGGGAATGCTTGAAGCATCAAGCAATGGAGAAGAATGA

mRNA sequence

ATGTCAAACATCGTTGATGGGATGCCTAGCGATATTTGTGTTGTTGTCGACCACTGCGAAACCAAGGTTTTGGCTTCAAATATAGTATCTTTGCAGCTCGATAACAACAAATCATCCTCGCAGCCAAAAAGTAGTGGAAAAAATTATAAGATTATTGACTACATTGATATTGATCCGCTGTCATCTTCAGTACCACTGAGTGAAGATTCAGTTTTTCAAAGCAATGACCAGTTGAAGAAAGCAATATACTTACTTGCTTTAAAGAATAATGGAGACCTGTGGATGGTCCGTAAATTCAGGGACAAGCACACTCTCATCACGAATGCTCCATTGATATTCTATGACAATGCTTGGAGGGGTCGTGAACTTGCACTCACGTCTATTAGGGGATCGTCTGAATCTTCATATGCACTAATTCCAGCATTCTCGGCAGCCTTAATTGAGAAAAATCCAGGTACATCTACAGATTCTCCCCTGGTTACGCCTCGTAGCTCTGCTCGGAATTATGGATCAGAGGCGGCGACAGGTGCAGACCAGCAGGTTCTCGAAGGGCCGGCTCACTACTCGCTGTCCAGGGGGCCGACGTCGATGGTGAGTCCGGTGAAGGCAGGCGTGGCGCTCACTTATGTTGAACTCCTTGTGGTGTTTGCCTCTCCTATGCTCCTTGGACAACCTCTAGAGTCTTCCCTACTATACTCCGGGCCAAGAACGACTTGTGGGAGTCTATATAAGATAGGGAATGGGAAGGGAATGCTTGAAGCATCAAGCAATGGAGAAGAATGA

Coding sequence (CDS)

ATGTCAAACATCGTTGATGGGATGCCTAGCGATATTTGTGTTGTTGTCGACCACTGCGAAACCAAGGTTTTGGCTTCAAATATAGTATCTTTGCAGCTCGATAACAACAAATCATCCTCGCAGCCAAAAAGTAGTGGAAAAAATTATAAGATTATTGACTACATTGATATTGATCCGCTGTCATCTTCAGTACCACTGAGTGAAGATTCAGTTTTTCAAAGCAATGACCAGTTGAAGAAAGCAATATACTTACTTGCTTTAAAGAATAATGGAGACCTGTGGATGGTCCGTAAATTCAGGGACAAGCACACTCTCATCACGAATGCTCCATTGATATTCTATGACAATGCTTGGAGGGGTCGTGAACTTGCACTCACGTCTATTAGGGGATCGTCTGAATCTTCATATGCACTAATTCCAGCATTCTCGGCAGCCTTAATTGAGAAAAATCCAGGTACATCTACAGATTCTCCCCTGGTTACGCCTCGTAGCTCTGCTCGGAATTATGGATCAGAGGCGGCGACAGGTGCAGACCAGCAGGTTCTCGAAGGGCCGGCTCACTACTCGCTGTCCAGGGGGCCGACGTCGATGGTGAGTCCGGTGAAGGCAGGCGTGGCGCTCACTTATGTTGAACTCCTTGTGGTGTTTGCCTCTCCTATGCTCCTTGGACAACCTCTAGAGTCTTCCCTACTATACTCCGGGCCAAGAACGACTTGTGGGAGTCTATATAAGATAGGGAATGGGAAGGGAATGCTTGAAGCATCAAGCAATGGAGAAGAATGA

Protein sequence

MSNIVDGMPSDICVVVDHCETKVLASNIVSLQLDNNKSSSQPKSSGKNYKIIDYIDIDPLSSSVPLSEDSVFQSNDQLKKAIYLLALKNNGDLWMVRKFRDKHTLITNAPLIFYDNAWRGRELALTSIRGSSESSYALIPAFSAALIEKNPGTSTDSPLVTPRSSARNYGSEAATGADQQVLEGPAHYSLSRGPTSMVSPVKAGVALTYVELLVVFASPMLLGQPLESSLLYSGPRTTCGSLYKIGNGKGMLEASSNGEE

Homology

[Close]

BLAST of Spg023991 vs. NCBI nr
Match: TYK10904.1 (uncharacterized protein E5676_scaffold231G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 2.6e-10
Identity = 59/178 (33.15%), Postives = 83/178 (46.63%), Query Frame = 0


Query: 8   MPSDICVVVDHCETKVLASNIVSLQLDNNKSSSQPKSSGKNYKIIDYIDIDPLSSS---V 67
           + +D+ VVVD        +    ++     SS  P++     + +  ID++   SS   +
Sbjct: 35  LDNDLLVVVD-------TTPATDIENTPYLSSELPRTEDSRSENV-IIDLNAFESSHIDI 94

Query: 68  PLSEDSVFQSNDQLKKAIYLLALKNNGDLWMVRKFRDKHTLITNAPL------------- 127
           P+   S+F+    LKKAIY+LAL ++ +L  VR  R    +I   P              
Sbjct: 95  PIRVGSMFRQKSVLKKAIYMLALNSSFELVTVRSNRTSFDIICKDPSCPWYLRASAPCSP 154

Query: 128 --------------IFYDNAWRGRELALTSIRGSSESSYALIPAFSAALIEKNPGTST 156
                         + YD AWRGRE+AL SIRG  E SYA+  AFS ALI  NPGT T
Sbjct: 155 SNVINYMKIHHEVNVSYDKAWRGREIALNSIRGILEDSYAMFSAFSDALIRNNPGTYT 204

[Close]

BLAST of Spg023991 vs. NCBI nr
Match: TYK22587.1 (uncharacterized protein E5676_scaffold195G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-09
Identity = 52/147 (35.37%), Postives = 73/147 (49.66%), Query Frame = 0


Query: 38  SSSQPKSSGKNYK--IIDYIDIDPLSSSVPLSEDSVFQSNDQLKKAIYLLALKNNGDLWM 97
           SS  P++     +  IID    +  ++ + +   S+F+    LKKAIY+LAL ++ +L  
Sbjct: 73  SSELPRTEDSRTENVIIDLNAFESPNTVIHIRVGSMFRQKSVLKKAIYMLALNSSFELVT 132

Query: 98  VRKFRDKHTL---------------------------ITNAPLIFYDNAWRGRELALTSI 156
           VR  R    +                           I ++  I YD AWRGRE+AL SI
Sbjct: 133 VRSNRTSFDIRCKDPSCPWYLRASVPCRPSDVINYMKIHHSVNISYDKAWRGREIALNSI 192

[Close]

BLAST of Spg023991 vs. NCBI nr
Match: XP_038887125.1 (uncharacterized protein LOC120077310 [Benincasa hispida])

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-09
Identity = 60/191 (31.41%), Postives = 85/191 (44.50%), Query Frame = 0


Query: 1   MSNIVDGMPSDICVVVDHCETKVLASNIVSLQLDNNKSSSQPKS---SGKNYKIIDYIDI 60
           M  + D    D+CVVVDH  +  +A N  +    NN+S++  +S      N +I+D  D 
Sbjct: 83  MLMLPDSPEIDLCVVVDHVSS--VAQNSQNTLYLNNESTNIDQSFKHPAGNNEIVDSQDF 142

Query: 61  DPLSSSVPLSEDSVFQSNDQLKKAIYLLALKNN--------------------------- 120
           D   S +P+     F S   LKKAIY LALKN+                           
Sbjct: 143 DVFQSGIPIRVGLPFSSKSVLKKAIYFLALKNSFELTTTRSNKTSFEIHCKDMSCGWYLR 202

Query: 121 ------GDLWMVRKFRDKHTLITNAPLIFYDNAWRGRELALTSIRGSSESSYALIPAFSA 156
                 G +W+V+KF D H    +  ++   +      +     +G+SESSY  +P FS 
Sbjct: 203 ASVYRGGGVWIVQKFIDNHKCCID--IVKDGHRQATSWIVAECTKGTSESSYIGLPPFST 262

[Close]

BLAST of Spg023991 vs. NCBI nr
Match: KAA0037393.1 (uncharacterized protein E6C27_scaffold278G001000 [Cucumis melo var. makuwa] >TYJ97518.1 uncharacterized protein E5676_scaffold85G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 2.2e-09
Identity = 63/180 (35.00%), Postives = 89/180 (49.44%), Query Frame = 0


Query: 1   MSNIVDGMPSDICVVVDHCETKVLASNIVSLQLDNNKSSSQPKSSGKNYKIIDYIDIDPL 60
           MS  +D   +D+ VVVD     V A+NI +    +++      S  +N      ID+D  
Sbjct: 1   MSKFID---NDLLVVVD----TVSATNIRNTSYLSSELPRIEDSRNEN----GIIDLDAF 60

Query: 61  SSS---VPLSEDSVFQSNDQLKKAIYLLALKNNGDL--------------------WMVR 120
            SS   + +   S+F+ N  LKKAIY+LAL N+ +L                    W+  
Sbjct: 61  ESSHTGISIRVGSMFRQNSVLKKAIYMLALNNSFELVTVTSNRTSFNIRCKDSSCPWLHV 120

Query: 121 KFRD--KHTLITNAPLIFYDNAWRGRELALTSIRGSSESSYALIPAFSAALIEKNPGTST 156
             RD   +  I +   + YD AWRGRE+AL SIRG+ E+SYA++ AF   LI  N GT T
Sbjct: 121 VLRDVINYMKIHHRLNVSYDKAWRGREIALNSIRGTLENSYAMLSAFLDKLIRNNLGTYT 169

[Close]

BLAST of Spg023991 vs. NCBI nr
Match: KAA0025876.1 (uncharacterized protein E6C27_scaffold34G001550 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 8.5e-09
Identity = 51/147 (34.69%), Postives = 72/147 (48.98%), Query Frame = 0


Query: 38  SSSQPKSSGKNYK--IIDYIDIDPLSSSVPLSEDSVFQSNDQLKKAIYLLALKNNGDLWM 97
           SS  P++     +  IID    +  ++ + +   S+F+    LKKAIY+LAL ++ +L  
Sbjct: 73  SSELPRTEDSRTENVIIDLNAFESPNTVIHIRVGSMFRQKSVLKKAIYMLALNSSFELVT 132

Query: 98  VRKFRDKHTL---------------------------ITNAPLIFYDNAWRGRELALTSI 156
           VR  R    +                           I ++  I YD AW GRE+AL SI
Sbjct: 133 VRSNRTSFDIRCKDPSCPWYLRASVPCRPSDVINYMKIHHSVNISYDKAWGGREIALNSI 192

[Close]

BLAST of Spg023991 vs. ExPASy TrEMBL
Match: A0A5D3CIA4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00820 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-10
Identity = 59/178 (33.15%), Postives = 83/178 (46.63%), Query Frame = 0


Query: 8   MPSDICVVVDHCETKVLASNIVSLQLDNNKSSSQPKSSGKNYKIIDYIDIDPLSSS---V 67
           + +D+ VVVD        +    ++     SS  P++     + +  ID++   SS   +
Sbjct: 35  LDNDLLVVVD-------TTPATDIENTPYLSSELPRTEDSRSENV-IIDLNAFESSHIDI 94

Query: 68  PLSEDSVFQSNDQLKKAIYLLALKNNGDLWMVRKFRDKHTLITNAPL------------- 127
           P+   S+F+    LKKAIY+LAL ++ +L  VR  R    +I   P              
Sbjct: 95  PIRVGSMFRQKSVLKKAIYMLALNSSFELVTVRSNRTSFDIICKDPSCPWYLRASAPCSP 154

Query: 128 --------------IFYDNAWRGRELALTSIRGSSESSYALIPAFSAALIEKNPGTST 156
                         + YD AWRGRE+AL SIRG  E SYA+  AFS ALI  NPGT T
Sbjct: 155 SNVINYMKIHHEVNVSYDKAWRGREIALNSIRGILEDSYAMFSAFSDALIRNNPGTYT 204

[Close]

BLAST of Spg023991 vs. ExPASy TrEMBL
Match: A0A5D3DFW1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00040 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.3e-10
Identity = 52/147 (35.37%), Postives = 73/147 (49.66%), Query Frame = 0


Query: 38  SSSQPKSSGKNYK--IIDYIDIDPLSSSVPLSEDSVFQSNDQLKKAIYLLALKNNGDLWM 97
           SS  P++     +  IID    +  ++ + +   S+F+    LKKAIY+LAL ++ +L  
Sbjct: 73  SSELPRTEDSRTENVIIDLNAFESPNTVIHIRVGSMFRQKSVLKKAIYMLALNSSFELVT 132

Query: 98  VRKFRDKHTL---------------------------ITNAPLIFYDNAWRGRELALTSI 156
           VR  R    +                           I ++  I YD AWRGRE+AL SI
Sbjct: 133 VRSNRTSFDIRCKDPSCPWYLRASVPCRPSDVINYMKIHHSVNISYDKAWRGREIALNSI 192

[Close]

BLAST of Spg023991 vs. ExPASy TrEMBL
Match: A0A5D3BH73 (DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G00290 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-09
Identity = 63/180 (35.00%), Postives = 89/180 (49.44%), Query Frame = 0


Query: 1   MSNIVDGMPSDICVVVDHCETKVLASNIVSLQLDNNKSSSQPKSSGKNYKIIDYIDIDPL 60
           MS  +D   +D+ VVVD     V A+NI +    +++      S  +N      ID+D  
Sbjct: 1   MSKFID---NDLLVVVD----TVSATNIRNTSYLSSELPRIEDSRNEN----GIIDLDAF 60

Query: 61  SSS---VPLSEDSVFQSNDQLKKAIYLLALKNNGDL--------------------WMVR 120
            SS   + +   S+F+ N  LKKAIY+LAL N+ +L                    W+  
Sbjct: 61  ESSHTGISIRVGSMFRQNSVLKKAIYMLALNNSFELVTVTSNRTSFNIRCKDSSCPWLHV 120

Query: 121 KFRD--KHTLITNAPLIFYDNAWRGRELALTSIRGSSESSYALIPAFSAALIEKNPGTST 156
             RD   +  I +   + YD AWRGRE+AL SIRG+ E+SYA++ AF   LI  N GT T
Sbjct: 121 VLRDVINYMKIHHRLNVSYDKAWRGREIALNSIRGTLENSYAMLSAFLDKLIRNNLGTYT 169

[Close]

BLAST of Spg023991 vs. ExPASy TrEMBL
Match: A0A5A7SJA0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G001550 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.1e-09
Identity = 51/147 (34.69%), Postives = 72/147 (48.98%), Query Frame = 0


Query: 38  SSSQPKSSGKNYK--IIDYIDIDPLSSSVPLSEDSVFQSNDQLKKAIYLLALKNNGDLWM 97
           SS  P++     +  IID    +  ++ + +   S+F+    LKKAIY+LAL ++ +L  
Sbjct: 73  SSELPRTEDSRTENVIIDLNAFESPNTVIHIRVGSMFRQKSVLKKAIYMLALNSSFELVT 132

Query: 98  VRKFRDKHTL---------------------------ITNAPLIFYDNAWRGRELALTSI 156
           VR  R    +                           I ++  I YD AW GRE+AL SI
Sbjct: 133 VRSNRTSFDIRCKDPSCPWYLRASVPCRPSDVINYMKIHHSVNISYDKAWGGREIALNSI 192

[Close]

BLAST of Spg023991 vs. ExPASy TrEMBL
Match: A0A5D3CE11 (DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00490 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 7.0e-09
Identity = 51/132 (38.64%), Postives = 67/132 (50.76%), Query Frame = 0


Query: 51  IIDYIDIDPLSSSVPLSEDSVFQSNDQLKKAIYLLALKNNGDLWMVR--------KFRDK 110
           IID    +   + + +   S+F+    LKKAIY+LAL N+ +L  VR        K +D 
Sbjct: 46  IIDLNAFESSHTGISIRVGSMFRQKSVLKKAIYMLALNNSFELVTVRSNGTSFDIKCKDP 105

Query: 111 HT---LITNAPL----------------IFYDNAWRGRELALTSIRGSSESSYALIPAFS 156
                L  +AP                 I YD AW+GRE+AL SIRG+ E SYA++ AFS
Sbjct: 106 SCTWYLRASAPCRPSDVINYMKIPHEVNISYDKAWKGREIALNSIRGTPEDSYAMLSAFS 165

The following BLAST results are available for this feature:

BLAST of Spg023991 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK10904.1	2.6e-10	33.15	uncharacterized protein E5676_scaffold231G00820 [Cucumis melo var. makuwa]	[more]
TYK22587.1	1.3e-09	35.37	uncharacterized protein E5676_scaffold195G00040 [Cucumis melo var. makuwa]	[more]
XP_038887125.1	1.7e-09	31.41	uncharacterized protein LOC120077310 [Benincasa hispida]	[more]
KAA0037393.1	2.2e-09	35.00	uncharacterized protein E6C27_scaffold278G001000 [Cucumis melo var. makuwa] >TYJ...	[more]
KAA0025876.1	8.5e-09	34.69	uncharacterized protein E6C27_scaffold34G001550 [Cucumis melo var. makuwa]	[more]

BLAST of Spg023991 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg023991 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CIA4	1.3e-10	33.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DFW1	6.3e-10	35.37	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BH73	1.1e-09	35.00	DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7SJA0	4.1e-09	34.69	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CE11	7.0e-09	38.64	DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of Spg023991 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..176
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg023991.1	Spg023991.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006310	DNA recombination
biological_process	GO:0032196	transposition
molecular_function	GO:0003676	nucleic acid binding