Spg023931 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg023931
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Calpain-type cysteine protease DEK1
Location	scaffold13: 409565 .. 410390 (-)
RNA-Seq Expression	Spg023931
Synteny	Spg023931

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GACAGGGGGCCTCAAGATGGCTCGATTTCAAGGTATCCGCCTCAGTCGTTGATCAGGGTGAACTCGGACATGATTCCTATCCAGGTACGCTCTCCTTCTCTGGGTCTTTCTCCTTCTATTCCAATCGAGAGGGGAGGGTGGTTGTGTTCAGGACGGCTAGTCTATTTTAAGCGTCCACTGACTGATCGAGAAACCTCCGACCTTTTGACTCTCCTATCATTGATTGGGGAGACCACTTTTAGCGCTTCTAGAAGGGATCTCCGCTTGTGGAGCCCTGACCCGCCTCGAGGTTTCTCTTGTCGATCATTTTTCCATTGCTTATTAGACCCTTCCCCCATCGATGTTTCCATCTTTTCTTTGCTTTGGAAGGTGAAAGCCCCAAAGAAGGTGCAGTTTTTTATTTGGCAGGTTATCCACGGATGAGTTAACACCCTTGATCGGCTATCTAGAAAGATTCCTCGCTTATTTGGGCCCTTTTGTTGCATTCTCTGTCGGATGGCGGAGGAAGACCTTGATCATATTTTGTGGCATTGCGACTTTGCTGCGACTGTTTGGGACGAGTTCTTTGGTCTTTTCGACTTGCAGTTTGCCAGACATAGAGGTCTTAGAGAGATGATCGAGGAGTTCCTTCCCCATCCTCCTTTGTTAAATATAATGTTCCCCTTTGGGGCGAGAGAAACAACAGACTTTTAGAGGGTTGGAGAGGGATTCAGTTGAGGTTTGGTCCCTTGTTAAATATAATGTTTCCCTTTGGGCGTCGGTGACGCGTTTGTTTTGTAATTATCCCATTGGTCTCATTATTTTGGATTGGAGGCCCTTCTTCTAA

mRNA sequence

GACAGGGGGCCTCAAGATGGCTCGATTTCAAGGTATCCGCCTCAGTCGTTGATCAGGGTGAACTCGGACATGATTCCTATCCAGGTACGCTCTCCTTCTCTGGGTCTTTCTCCTTCTATTCCAATCGAGAGGGGAGGGTGGTTGTGTTCAGGACGGCTAGTCTATTTTAAGCGTCCACTGACTGATCGAGAAACCTCCGACCTTTTGACTCTCCTATCATTGATTGGGGAGACCACTTTTAGCGCTTCTAGAAGGGATCTCCGCTTGTGGAGCCCTGACCCGCCTCGAGGTGAAAGCCCCAAAGAAGGTGCAGTTTTTTATTTGGCAGACCTTGATCATATTTTGTGGCATTGCGACTTTGCTGCGACTGTTTGGGACGAGTTCTTTGGTCTTTTCGACTTGCAGTTTGCCAGACATAGAGAGAAACAACAGACTTTTAGAGGGTTGGAGAGGGATTCAGTTGAGGTTTGGTCCCTTGTTAAATATAATGTTTCCCTTTGGGCGTCGGTGACGCGTTTGTTTTGTAATTATCCCATTGGTCTCATTATTTTGGATTGGAGGCCCTTCTTCTAA

Coding sequence (CDS)

GACAGGGGGCCTCAAGATGGCTCGATTTCAAGGTATCCGCCTCAGTCGTTGATCAGGGTGAACTCGGACATGATTCCTATCCAGGTACGCTCTCCTTCTCTGGGTCTTTCTCCTTCTATTCCAATCGAGAGGGGAGGGTGGTTGTGTTCAGGACGGCTAGTCTATTTTAAGCGTCCACTGACTGATCGAGAAACCTCCGACCTTTTGACTCTCCTATCATTGATTGGGGAGACCACTTTTAGCGCTTCTAGAAGGGATCTCCGCTTGTGGAGCCCTGACCCGCCTCGAGGTGAAAGCCCCAAAGAAGGTGCAGTTTTTTATTTGGCAGACCTTGATCATATTTTGTGGCATTGCGACTTTGCTGCGACTGTTTGGGACGAGTTCTTTGGTCTTTTCGACTTGCAGTTTGCCAGACATAGAGAGAAACAACAGACTTTTAGAGGGTTGGAGAGGGATTCAGTTGAGGTTTGGTCCCTTGTTAAATATAATGTTTCCCTTTGGGCGTCGGTGACGCGTTTGTTTTGTAATTATCCCATTGGTCTCATTATTTTGGATTGGAGGCCCTTCTTCTAA

Protein sequence

DRGPQDGSISRYPPQSLIRVNSDMIPIQVRSPSLGLSPSIPIERGGWLCSGRLVYFKRPLTDRETSDLLTLLSLIGETTFSASRRDLRLWSPDPPRGESPKEGAVFYLADLDHILWHCDFAATVWDEFFGLFDLQFARHREKQQTFRGLERDSVEVWSLVKYNVSLWASVTRLFCNYPIGLIILDWRPFF

Homology

[Close]

BLAST of Spg023931 vs. NCBI nr
Match: TYK09969.1 (calpain-type cysteine protease DEK1 [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-11
Identity = 43/120 (35.83%), Postives = 63/120 (52.50%), Query Frame = 0


Query: 56  FKRPLTDRETSDLLTLLSLIGETTFSASRRDLRLWSPDP-----------------PRGE 115
           F+R L+DRETS+++ L+SL+   +F   RRD+ +WSP P                 P  E
Sbjct: 175 FRRALSDRETSNVVALISLLESHSFRLGRRDVTVWSPFPLEGFLCKSFFQCLVNSTPTSE 234

Query: 116 S----------PKEGAVF---YLADLDHILWHCDFAATVWDEFFGLFDLQFARHREKQQT 146
           S          P++  +F      DLDH+LWHC+  + VWD+F   F L +ARHR+ + T
Sbjct: 235 SVSSLIWRIKVPRKFVLFSWQVEEDLDHLLWHCELVSCVWDDFLQTFGLSYARHRDVRGT 294

[Close]

BLAST of Spg023931 vs. NCBI nr
Match: XP_016900613.1 (PREDICTED: uncharacterized protein LOC107990976 [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-10
Identity = 37/119 (31.09%), Postives = 57/119 (47.90%), Query Frame = 0


Query: 108 LADLDHILWHCDFAATVWDEFFGLFDLQFARHRE-------------------------- 167
           L DLDH+L H   A+ +WD F   F L +ARHR+                          
Sbjct: 53  LEDLDHLLGHSALASGIWDAFLQTFGLLYARHRDVRGMIEEFLLNLPCGERGRFLWRACV 112

Query: 168 -----------KQQTFRGLERDSVEVWSLVKYNVSLWASVTRLFCNYPIGLIILDWRPF 190
                       ++ F G+ER + E+W +++Y+VSLW S+++ FCNYP+ +I+  W  F
Sbjct: 113 CAILWVLWDETNRRVFWGVERGTGEIWLVIRYHVSLWDSISKTFCNYPLDMILYSWATF 171

[Close]

BLAST of Spg023931 vs. NCBI nr
Match: TYK19563.1 (uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 4.7e-09
Identity = 47/133 (35.34%), Postives = 68/133 (51.13%), Query Frame = 0


Query: 61  TDRETSDLLTLLSLIGETTFSASRRDLRLWSPDPPRG-ESPKEGAVFY--LADLDHILWH 120
           T RET ++ +LLSL+   +F   RRD    S    R   +  EG + +    +    LW 
Sbjct: 273 TLRETMEVASLLSLLEGCSFREGRRDEFDVSIAGQRDVRAMTEGFILHPPFKEKGRFLWL 332

Query: 121 CDFAATVWDEFFGLFDLQFARHREKQQTFRGLERDSVEVWSLVKYNVSLWASVTRLFCNY 180
            +  A +WD +               + FRG +RD  E+ SLV+++VSLW SV++LFCNY
Sbjct: 333 AEVCAIMWDIW----------GERNDRVFRGKDRDLSEIGSLVRFHVSLWTSVSKLFCNY 392

Query: 181 PIGLIILDWRPFF 191
            +G I L   PFF
Sbjct: 393 SLGNINLSLIPFF 395

[Close]

BLAST of Spg023931 vs. NCBI nr
Match: KAG7014044.1 (hypothetical protein SDJN02_24216, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 58.9 bits (141), Expect = 5.4e-05
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 146 FRGLERDSVEVWSLVKYNVSLWASVTRLFCNYPIGLIILDWRP 189
           FRGLER   +VW+ + + VSLW S T+  CNY +GLI+LD RP
Sbjct: 138 FRGLERSWSDVWAFITFKVSLWTSTTKSLCNYSLGLILLDRRP 180

[Close]

BLAST of Spg023931 vs. NCBI nr
Match: TYJ96204.1 (nuclear cap-binding protein subunit 2 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 7.1e-05
Identity = 28/70 (40.00%), Postives = 36/70 (51.43%), Query Frame = 0


Query: 71  LLSLIGETTFSASRRDLRLWSPDPPRGESPKEGAVFYLADLDHILWHCDFAATVWDEFFG 130
           LLSL+ E  F   RRD+R+WSP P   E           DLDH+LW C +   VW  F  
Sbjct: 427 LLSLLDECNFVVGRRDIRIWSPKPSGEE-----------DLDHLLWDCQYTRAVWSWFLQ 485

Query: 131 LFDLQFARHR 141
            FD++ A  +
Sbjct: 487 EFDVRIASQK 485

[Close]

BLAST of Spg023931 vs. ExPASy TrEMBL
Match: A0A5D3CI74 (Calpain-type cysteine protease DEK1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00980 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-11
Identity = 43/120 (35.83%), Postives = 63/120 (52.50%), Query Frame = 0


Query: 56  FKRPLTDRETSDLLTLLSLIGETTFSASRRDLRLWSPDP-----------------PRGE 115
           F+R L+DRETS+++ L+SL+   +F   RRD+ +WSP P                 P  E
Sbjct: 175 FRRALSDRETSNVVALISLLESHSFRLGRRDVTVWSPFPLEGFLCKSFFQCLVNSTPTSE 234

Query: 116 S----------PKEGAVF---YLADLDHILWHCDFAATVWDEFFGLFDLQFARHREKQQT 146
           S          P++  +F      DLDH+LWHC+  + VWD+F   F L +ARHR+ + T
Sbjct: 235 SVSSLIWRIKVPRKFVLFSWQVEEDLDHLLWHCELVSCVWDDFLQTFGLSYARHRDVRGT 294

[Close]

BLAST of Spg023931 vs. ExPASy TrEMBL
Match: A0A1S4DXB1 (uncharacterized protein LOC107990976 OS=Cucumis melo OX=3656 GN=LOC107990976 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 9.3e-11
Identity = 37/119 (31.09%), Postives = 57/119 (47.90%), Query Frame = 0


Query: 108 LADLDHILWHCDFAATVWDEFFGLFDLQFARHRE-------------------------- 167
           L DLDH+L H   A+ +WD F   F L +ARHR+                          
Sbjct: 53  LEDLDHLLGHSALASGIWDAFLQTFGLLYARHRDVRGMIEEFLLNLPCGERGRFLWRACV 112

Query: 168 -----------KQQTFRGLERDSVEVWSLVKYNVSLWASVTRLFCNYPIGLIILDWRPF 190
                       ++ F G+ER + E+W +++Y+VSLW S+++ FCNYP+ +I+  W  F
Sbjct: 113 CAILWVLWDETNRRVFWGVERGTGEIWLVIRYHVSLWDSISKTFCNYPLDMILYSWATF 171

[Close]

BLAST of Spg023931 vs. ExPASy TrEMBL
Match: A0A5D3D7T2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00660 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.3e-09
Identity = 47/133 (35.34%), Postives = 68/133 (51.13%), Query Frame = 0


Query: 61  TDRETSDLLTLLSLIGETTFSASRRDLRLWSPDPPRG-ESPKEGAVFY--LADLDHILWH 120
           T RET ++ +LLSL+   +F   RRD    S    R   +  EG + +    +    LW 
Sbjct: 273 TLRETMEVASLLSLLEGCSFREGRRDEFDVSIAGQRDVRAMTEGFILHPPFKEKGRFLWL 332

Query: 121 CDFAATVWDEFFGLFDLQFARHREKQQTFRGLERDSVEVWSLVKYNVSLWASVTRLFCNY 180
            +  A +WD +               + FRG +RD  E+ SLV+++VSLW SV++LFCNY
Sbjct: 333 AEVCAIMWDIW----------GERNDRVFRGKDRDLSEIGSLVRFHVSLWTSVSKLFCNY 392

Query: 181 PIGLIILDWRPFF 191
            +G I L   PFF
Sbjct: 393 SLGNINLSLIPFF 395

[Close]

BLAST of Spg023931 vs. ExPASy TrEMBL
Match: A0A5D3BB82 (Nuclear cap-binding protein subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold261G00390 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.4e-05
Identity = 28/70 (40.00%), Postives = 36/70 (51.43%), Query Frame = 0


Query: 71  LLSLIGETTFSASRRDLRLWSPDPPRGESPKEGAVFYLADLDHILWHCDFAATVWDEFFG 130
           LLSL+ E  F   RRD+R+WSP P   E           DLDH+LW C +   VW  F  
Sbjct: 427 LLSLLDECNFVVGRRDIRIWSPKPSGEE-----------DLDHLLWDCQYTRAVWSWFLQ 485

Query: 131 LFDLQFARHR 141
            FD++ A  +
Sbjct: 487 EFDVRIASQK 485

[Close]

BLAST of Spg023931 vs. ExPASy TrEMBL
Match: A5AK27 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_008195 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-04
Identity = 39/142 (27.46%), Postives = 63/142 (44.37%), Query Frame = 0


Query: 56   FKRPLTDRETSDLLTLLSLIGETTFSASRRDLRLWSPDPPRGESPKEGAVFYLADLDH-- 115
            F+R LTD E  DL +L+  +     S S  D R WS  P    + K    F+LA   H  
Sbjct: 1703 FRRNLTDSEIEDLESLMRSLDRLHISPSVPDKRSWSISPSGLFTVKS---FFLALSQHSE 1762

Query: 116  --------ILWHCDFAATVWDEFFGLFDLQFARHREKQ-QTFRGLERDSVEVWSLVKYNV 175
                     +W+      +W +      L +   RE+  + F    R+S  +W  +++  
Sbjct: 1763 SPPVFPTKFVWNSQRGVVLWQD--ACIALMWVVWRERNARIFEDKARNSGCLWDSIRFLA 1822

Query: 176  SLWASVTRLFCNYPIGLIILDW 187
            SLWA  +++F   P+ ++ LDW
Sbjct: 1823 SLWAFCSKVFKGIPLNMLQLDW 1839

The following BLAST results are available for this feature:

BLAST of Spg023931 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK09969.1	3.0e-11	35.83	calpain-type cysteine protease DEK1 [Cucumis melo var. makuwa]	[more]
XP_016900613.1	1.9e-10	31.09	PREDICTED: uncharacterized protein LOC107990976 [Cucumis melo]	[more]
TYK19563.1	4.7e-09	35.34	uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa]	[more]
KAG7014044.1	5.4e-05	55.81	hypothetical protein SDJN02_24216, partial [Cucurbita argyrosperma subsp. argyro...	[more]
TYJ96204.1	7.1e-05	40.00	nuclear cap-binding protein subunit 2 [Cucumis melo var. makuwa]	[more]

BLAST of Spg023931 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg023931 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CI74	1.4e-11	35.83	Calpain-type cysteine protease DEK1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S4DXB1	9.3e-11	31.09	uncharacterized protein LOC107990976 OS=Cucumis melo OX=3656 GN=LOC107990976 PE=...	[more]
A0A5D3D7T2	2.3e-09	35.34	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BB82	3.4e-05	40.00	Nuclear cap-binding protein subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A5AK27	1.7e-04	27.46	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI...	[more]

BLAST of Spg023931 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg023931.1	Spg023931.1	mRNA