Spg023905 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg023905
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Location	scaffold13: 1820145 .. 1826615 (-)
RNA-Seq Expression	Spg023905
Synteny	Spg023905

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCTACTGCCCATCGTTGCTTCAACGGACTGACGTTGCAAGAAGATAAAGCTTCTGTCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTTTTGTCAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTTATGATGACTGAGACAAAAACTATGGAAGAAAGAATGGCTGAGATGCAAGAACACATCAACAACTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCGTAAAAAATCACGACAAAGGAAAGTCTATAGTGCAAGATGATCATCCACAATGTTCTGCTTCGGTCGCTTCACTATCCATCCAACAGCTCCAAGATATGATCACAAACTGTATCAGAGCTCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTACTCCAAACCTTATACTAAGAGGATTGATAATTTGAGAATGCCAATCGGGTATCAGCCACCGAAATTTCAACAATTTGATGGAAAAGGCAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAGGGGATCTACTAGTCAAACAGTTCGTTCGAACACTTAAAGGAAATGCTTTTGACTGGTACACTGATCTAGAACCTGAGTCAGTAGACAGTTGGGAGGAACTCGAAAGAGAGTTTTTGAATCGCTTCTACAGCACTAGACGAACCGTTAGCATGTTCGAGCTCACAAACACTAAACAACGAAAAGGTGAACTCGTTGTTAACTATATAAATCGCTGGAGAGCTATGAGTCTAGATTGCAAAGATCGCCTCACTGAACTCTCTTCCGTTGAGATGTGCATTCAAGGCATGCACTGGGAACTCCTCTACATCCTTAAAGGTATAAAGCCTCGCACCTTTGAGGAACTAGCAACTCGTGCCCACGATATGGAGCTAAGTATTGCTAGTCGAGAAAACCAAGACCTTCTCCTCTTTAACATGAGAAAAGAAGGAAGGAACGATGAAGAGACTATAGAAGAATCCATGGTTGTAAACACAACCCTTCCCAAGTTGTCTTCAAAAGAAAAGCGACAAACAAATGGAGCGCATCACTTAACTTTAAAGGAAAGACAGAAGAAAATATATCCTTTCCCTGATGCCGACATCCCTGATATGTTGGAACAACTATTGGAAGCGCAACTGATAGAGCTTCCTAAGTGTAAACGGCCAGAAGAGATGGAGAAAGTCGATGATCCCAAGTATTGCAAATATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATTTTAAAGCTGGCTAAGGAAGGCAAAATTGAGCTTGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGGAAAGAGCAAGCATCAAAGAAAGAAGGATCCTAAGAAACTTCAAAGCAAGAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCGAAAACCGGTGACTGTGAAGGAGATCTTCTCCAAAACTTTCCACAAAAAGAAAAAAGAGAACCTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAAAAGTGAACAAAGGACTTCTGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGCCGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGAATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAATCCTGCAAATGAAGGATCTGATCAAGACCATGACAAAGATAAGAGCTTTTAAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGTGCAAAAAAAATCTTGAACTACGTTATGACTTGATCCCTTTTCTTCAAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTGCAAACAAAAAAAAAAAAAGGAAAGTGCAACAAATATTGAAGCACGACGATATAAATTGAGGAAATTCATCACTAGTGGGGGCAACACAGCGAATGGAAGTTGCTTCCTCCAAGTTCGAAGGTTTCCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGATCCTTCCCTCCAAGTTCGAAGGTTCTCACCTCGCTTCGCTGCTGTTCCCTCCTCCAAGTTCGAAGGTTCTCACGCGTTTCACTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCACTGAAGTTCCTTCCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCTCACGCGCTTCGCTGCGTTCCTTCCTCCAAGTTCGAAGGTCCTCACACGCTTCGCTGCAGCTCCTTCCTCCAAGTTTGAAGGTTCTCACGTCGCTTCGCTGCAGCTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTGCGATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGATCGAAGGTTCTCATGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCATTTCCTTCCCCCCAAATTTGAAGGTTCTCACGTGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACACGCGCTTCGCTGACGCCGCTTTGCGCTGTAGTTCCTTCCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTGCGATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTGTTCTCACGCGCTTCGTGAAGTTCCTTCCTCCAAATTCGAAGGTTCTTACGCGCTTCGCTGACGCCGCTTCGCGCTGTAGTTCCTTCCCTCCAAGTTCGAAGGTGTTCTCACGCGCTTCGTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAGTTCCTTCCCCCGAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTCTCACGTCGCTTCGCTGCGCTCATGCGCTTCGCTACAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTGCGATCCTTCGTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGATCGAAGATTCTCATGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCATTTCCTTCCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAATTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGCACTTCGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGCTGCACTCCAGCGCTACTTCCTAAAGTCCAAAGACGTCAATTGTCCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCAAGGGTCCTCATGCTACGCTCGGCTACATTGCTGCGCTACTTTCTAAAGTCCAAAGACGTCAATTGTCCCTGCACTCATGCTGTAAAGGGCATGGCGGCGACACAAGTCCAAGGACATGTCCTAAAGCGAGAAACATGTCCCTGTACTCATGCTGAAAAGGGCGTGGCGGCGACACAAGTCCAAGGAACATGTTCCAACTCAAGGAACATGTCCTTGCACTCGTGTTGAAAGGCGTGGCAGCGGCACAACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGCGGCGGAGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGTGGCGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACACGTCCTTGCAACTCGTGCTGAAAGGTGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAGCTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGTGACGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCTTGCACTCGTGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGTTGAAAGGAGTGACGGCGGCACAAGTCCAAGGAACATGTCCTTGCACTCTTGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGAACATGTCTCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGTGGCGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACACGTCCCTGTACTCATGCTGAAAAGGGCGTGGCGGCGACACAAGTCCAAGGAACATGTTCCAACTCAAGGAACATGTCCTTGCACTCGTGTTGAAAGGCGTGGCAGCGGCACAACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGCGGCGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGTGGCGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACACGTCCTTGCAACTCGTGTTGAAAGGTGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAGCTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGTGACGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCTTGCACTCGTGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGAGTGACGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCTTGCACTCGTGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGAACATGTCTCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGTGTGGCGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACACGTCCCTGTACTCATGCTGAAAAGGGCGTGGCGGCGACACAAGTCCAAGGAACATGTTCCAACTCAAGGAACATGTCCTTGCACTCGTGTTGAAAGGCGTGGCAGCGGCACAACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGCGGCGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGTGGCGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACACGTCCTTGCAACTCGTGCTGAAAGGTGTGGCGGCGACACAAGTCTAAGGAACATGTCCCAGCTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGTGACGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCTTGCACTCGTGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGTGACGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCTTGCACTCGTGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGAACATGTCTCAACTCAAGGAACATGTCCGTGCACTCGTGCTGA

mRNA sequence

ATGGGTTCTACTGCCCATCGTTGCTTCAACGGACTGACGTTGCAAGAAGATAAAGCTTCTGTCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTTTTGTCAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTTATGATGACTGAGACAAAAACTATGGAAGAAAGAATGGCTGAGATGCAAGAACACATCAACAACTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAAGAAGTAAAAAGTTTTCTCAACCTCGAAAACCGGTGACTGTGAAGGAGATCTTCTCCAAAACTTTCCACAAAAAGAAAAAAGAGAACCTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAAAAGTGAACAAAGGACTTCTGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGCCGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGAATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTGGGGGCAACACAGCGAATGGAAGTTGCTTCCTCCAAGTTCGAAGGTTTCCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGATCCTTCCCTCCAAGTTCGAAGGTTCTCACCTCGCTTCGCTGCTGTTCCCTCCTCCAAGTTCGAAGGTTCTCACGCGTTTCACTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCACTGAAGTTCCTTCCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGCTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTGCGATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGATCGAAGGTTCTCATGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCATTTCCTTCCCCCCAAATTTGAAGGTTCTCACGTGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACACGCGCTTCGCTGACGCCGCTTTGCGCTGTAGTTCCTTCCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTGCGATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGTTCCTTCCCTCCAAGTTCGAAGGTGTTCTCACGCGCTTCGTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAGTTCCTTCCCCCGAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTCTCACGTCGCTTCGCTGCGCTCATGCGCTTCGCTACAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTGCGATCCTTCGTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGATCGAAGATTCTCATGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCATTTCCTTCCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAATTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGCACTTCGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGCTGCACTCCAGCGCTACTTCCTAAAGTCCAAAGACGTCAATTGTCCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCAAGGGTCCTCATGCTACGCTCGGCTACATTGCTGCGCTACTTTCTAAAGTCCAAAGACGTCAATTGTCCCTGCACTCATGCTGTAAAGGGCATGGCGGCGACACAAGTCCAAGGACATGCGTGGCAGCGGCACAACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGCGGCGGAGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAGCTCAAGGAACATGTCCGTGCACTCGCGTGGCGGCGACACAAGTCCAAGGAACATGTCTCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGTGGCGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACACGTCCCTGTACTCATGCTGAAAAGGGCGTGGCGGCGACACAAGTCCAAGGAACATGTTCCAACTCAAGGAACATGTCCTTGCACTCGTGTTGAAAGGCGTGGCAGCGGCACAACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGCGTGGCGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACACGTCCTTGCAACTCGTGTTGAAAGGTGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAGCTCAAGGAACATGTCCGTGCACTCGCGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGAGTGACGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCTTGCACTCGTGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGAACATGTCTCAACTCAAGGAACATGTCCGTGCACTCGGCGTGGCGGCGACACAAGTCCAAGGAACATGTTCCAACTCAAGGAACATGTCCTTGCACTCGTGTTGAAAGGCGTGGCAGCGGCACAACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGCGCGGCGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGTGGCGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACACGTCCTTGCAACTCGTGCTGAAAGGTGTGGCGGCGACACAAGTCTAAGGAACATGTCCCAGCTCAAGGAACATGTCCGTGCACTCGCGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGTGACGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCTTGCACTCGTGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGAACATGTCTCAACTCAAGGAACATGTCCGTGCACTCGTGCTGA

Coding sequence (CDS)

ATGGGTTCTACTGCCCATCGTTGCTTCAACGGACTGACGTTGCAAGAAGATAAAGCTTCTGTCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTTTTGTCAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTTATGATGACTGAGACAAAAACTATGGAAGAAAGAATGGCTGAGATGCAAGAACACATCAACAACTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAAGAAGTAAAAAGTTTTCTCAACCTCGAAAACCGGTGACTGTGAAGGAGATCTTCTCCAAAACTTTCCACAAAAAGAAAAAAGAGAACCTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAAAAGTGAACAAAGGACTTCTGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGCCGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGAATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTGGGGGCAACACAGCGAATGGAAGTTGCTTCCTCCAAGTTCGAAGGTTTCCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGATCCTTCCCTCCAAGTTCGAAGGTTCTCACCTCGCTTCGCTGCTGTTCCCTCCTCCAAGTTCGAAGGTTCTCACGCGTTTCACTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCACTGAAGTTCCTTCCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGCTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTGCGATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGATCGAAGGTTCTCATGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCATTTCCTTCCCCCCAAATTTGAAGGTTCTCACGTGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACACGCGCTTCGCTGACGCCGCTTTGCGCTGTAGTTCCTTCCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTGCGATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGTTCCTTCCCTCCAAGTTCGAAGGTGTTCTCACGCGCTTCGTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAGTTCCTTCCCCCGAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTCTCACGTCGCTTCGCTGCGCTCATGCGCTTCGCTACAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTGCGATCCTTCGTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGATCGAAGATTCTCATGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCATTTCCTTCCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAATTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGCACTTCGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGCTGCACTCCAGCGCTACTTCCTAAAGTCCAAAGACGTCAATTGTCCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCAAGGGTCCTCATGCTACGCTCGGCTACATTGCTGCGCTACTTTCTAAAGTCCAAAGACGTCAATTGTCCCTGCACTCATGCTGTAAAGGGCATGGCGGCGACACAAGTCCAAGGACATGCGTGGCAGCGGCACAACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGCGGCGGAGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAGCTCAAGGAACATGTCCGTGCACTCGCGTGGCGGCGACACAAGTCCAAGGAACATGTCTCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGTGGCGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACACGTCCCTGTACTCATGCTGAAAAGGGCGTGGCGGCGACACAAGTCCAAGGAACATGTTCCAACTCAAGGAACATGTCCTTGCACTCGTGTTGAAAGGCGTGGCAGCGGCACAACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGCGTGGCGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACACGTCCTTGCAACTCGTGTTGAAAGGTGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAGCTCAAGGAACATGTCCGTGCACTCGCGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGAGTGACGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCTTGCACTCGTGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGAACATGTCTCAACTCAAGGAACATGTCCGTGCACTCGGCGTGGCGGCGACACAAGTCCAAGGAACATGTTCCAACTCAAGGAACATGTCCTTGCACTCGTGTTGAAAGGCGTGGCAGCGGCACAACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGCGCGGCGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGTGGCGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACACGTCCTTGCAACTCGTGCTGAAAGGTGTGGCGGCGACACAAGTCTAAGGAACATGTCCCAGCTCAAGGAACATGTCCGTGCACTCGCGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGTGACGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCTTGCACTCGTGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGAACATGTCTCAACTCAAGGAACATGTCCGTGCACTCGTGCTGA

Protein sequence

MGSTAHRCFNGLTLQEDKASVVAGQETTLQGAYTNDKFFVKYNPLFEPDSDVVTVMMTETKTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQRSKKFSQPRKPVTVKEIFSKTFHKKKKENLATSYCIDVEEVDNSKKSEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSLKWGQHSEWKLLPPSSKVSTRFAAVPSPQIRRFSRASLQFLPHSSKVLTRFAADPSLQVRRFSPRFAAVPSSKFEGSHAFHCSSFLTVRRFSRASLKFLPPQVRRFSRRFAAVPSSKFEAPSSKFEGSHIASLRSFLQVRRFSRASLCNSFPKIEGSHALRAVPSSKFEGSHALRCISFPPNLKVLTCFAAVPSSKFEGSHTRFADAALRCSSFPPSLKVLTSLRCDPSSKFEGSHALRSAIPSPKFEVPSLQVRRCSHALRAVPSPKFEGSHALRAVPLPPSSKVLTRFALQFLPPKFEGSHALRCSSFLQVQRFSRRFAALMRFATVPSSKFEGSHIASLRSFVQVRRFSRASLCNSFPKIEDSHALRAVPSSKFEGSHALRCISFPPNSKVLTRFAAVPSSKFEGSHALRSAIPSPKFEGSHALRAIPSSKFEGSHALRCSSFPPNSKVLTRFAAVPSPQVRRFSRTSLQFLPPSSKVLTRFAALQRYFLKSKDVNCPHAALLPSPSSRVLMLRSATLLRYFLKSKDVNCPCTHAVKGMAATQVQGHAWQRHNKSKEHVPTQGTCPCTRAERRGGDTSPRNMSQLKEHVRALVLKGAAEAQVQGTCPNSRNMSVHSCGGDTSPRNMSQLKEHVRALAWRRHKSKEHVSTQGTCPCTRAERRGGGTSPRNMSQLKEHVPVLMLKRAWRRHKSKEHVPTQGTCPCTRVERRGSGTTSPRNMSQLKEHVRALVLKGVAATQVQGTCPNSRNMSVHSRGGGTSPRNMSQLKEHVLATRVERCGGDTSPRNMSQLKEHVRALAWRRHKSKEHVPTQGTCPCTRAERSDGGTSPRNMSQLKEHVLALVLKGVAATQVQGTCLNSRNMSVHSAWRRHKSKEHVPTQGTCPCTRVERRGSGTTSPRNMSQLKEHVRALARRRHKSKEHVPTQGTCPCTRAERRGGGTSPRNMSQLKEHVLATRAERCGGDTSLRNMSQLKEHVRALAWRRHKSKEHVPTQGTCPCTRAERRDGGTSPRNMSQLKEHVLALVLKGVAATQVQGTCLNSRNMSVHSC

Homology

[Close]

BLAST of Spg023905 vs. NCBI nr
Match: KAA0050736.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ95700.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 171.8 bits (434), Expect = 4.0e-38
Identity = 97/177 (54.80%), Postives = 129/177 (72.88%), Query Frame = 0


Query: 107 QRSKKFSQPRKPVTVKEIFSKTFHKKKKENLA------TSYCIDV-------EEVDNSKK 166
           ++ +KF QPR+ +T+ E F ++F +   E +       T+  ++V       EEVDNS +
Sbjct: 319 EKDEKFLQPRRSITLAEFFPRSFLEDHSEEILEVTACHTTSIVEVDNNYDSYEEVDNSNE 378

Query: 167 SEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPS 226
            +QRTSVFDRIKP TTR SVFQR+SMA  EEENQC +ST+TR SAF+RLS+S SKK +PS
Sbjct: 379 IKQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPMSTYTRTSAFKRLSISRSKKHRPS 438

Query: 227 TSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSL 271
           TS FDRLK+T+DQ +R+M +L+ K F E N D K++SR+PSR+KRK S+ INTEGSL
Sbjct: 439 TSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIYSRVPSRIKRKLSIDINTEGSL 495

[Close]

BLAST of Spg023905 vs. NCBI nr
Match: KAA0050734.1 (gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 167.9 bits (424), Expect = 5.7e-37
Identity = 96/176 (54.55%), Postives = 124/176 (70.45%), Query Frame = 0


Query: 108 RSKKFSQPRKPVTVKEIFSKTFHKKKKENLA------TSYCIDV-------EEVDNSKKS 167
           + + F QPR+ +T+ E   ++F +   E +       T+  ++V       EEVDNS + 
Sbjct: 10  KDEDFLQPRRSITLAEFLPRSFLEDHPEEILEVTACHTTSIVEVDKNYDSYEEVDNSNEI 69

Query: 168 EQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPST 227
           +QRTS+FDRIKP TTR  VFQR+SMA  EEENQC  ST+ R SAF+RLS+STSKK +PST
Sbjct: 70  KQRTSIFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPST 129

Query: 228 SVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSL 271
           S FDRLK+T+DQ +R+M +L+ K F E N D K+HSR+PSRMKRK SV INTEGSL
Sbjct: 130 SAFDRLKMTNDQQQREMKSLKAKPFHEENGDDKIHSRVPSRMKRKLSVDINTEGSL 185

[Close]

BLAST of Spg023905 vs. NCBI nr
Match: KAA0036008.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 167.2 bits (422), Expect = 9.8e-37
Identity = 96/176 (54.55%), Postives = 124/176 (70.45%), Query Frame = 0


Query: 108 RSKKFSQPRKPVTVKEIFSKTFHKKKKENLA------TSYCIDV-------EEVDNSKKS 167
           + + F QPR+ +T+ E   ++F +   E +       T+  ++V       EEVDNS + 
Sbjct: 10  KDEHFLQPRRSITLAEFLPRSFLEDHPEEILEVTACHTTNIVEVDNNYDSYEEVDNSNEI 69

Query: 168 EQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPST 227
           +QRTSVFDRIKP TTR  VFQR+SMA  EEENQC +ST+ R SAF+RLS+STSKK +PST
Sbjct: 70  KQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPMSTYARTSAFKRLSISTSKKHRPST 129

Query: 228 SVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSL 271
           S FDRLK+T+DQ +R+M + + K F E N D K+HSR+PSRMKRK SV INTEGSL
Sbjct: 130 SAFDRLKMTNDQQQREMKSFKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 185

[Close]

BLAST of Spg023905 vs. NCBI nr
Match: TYK08944.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 166.8 bits (421), Expect = 1.3e-36
Identity = 106/219 (48.40%), Postives = 141/219 (64.38%), Query Frame = 0


Query: 82  EEKDSQIEQLKSQIENQH----IAESSQTQRSKK-------------FSQPRKPVTVKEI 141
           +E+ +   Q KS    +H    I+   + +R+KK             F QPR+ +T+ E 
Sbjct: 443 KERQTNSVQTKSHFHQKHSKGNISHKKKGRRNKKMWKPKPIKGKEEDFLQPRRSITLAEF 502

Query: 142 FSKTFHKKKKENLA------TSYCIDV-------EEVDNSKKSEQRTSVFDRIKPPTTRP 201
            S++F +   E +       T+  ++V       EEVDNS + +QRTSVFDRIKP TTR 
Sbjct: 503 LSRSFLEDHSEEVLEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRS 562

Query: 202 SVFQRMSMAATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKM 261
           SVFQR+SMA  EE+NQC  ST+ R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M
Sbjct: 563 SVFQRLSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREM 622

Query: 262 DNLEVKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSL 271
            +L+ K F E N D K+H+R+PSRMKRK SV INTEGSL
Sbjct: 623 KSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSL 661

[Close]

BLAST of Spg023905 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 1.7e-36
Identity = 106/219 (48.40%), Postives = 139/219 (63.47%), Query Frame = 0


Query: 82  EEKDSQIEQLKSQIENQH----IAESSQTQRSKKF-------------SQPRKPVTVKEI 141
           +E+ +   Q KS    +H    I+   + +R+KK               QPR+ +T+ E 
Sbjct: 26  KERQTSSVQTKSHFHQKHSKGNISHKKKGRRNKKMWKPKPIKGKDEDCLQPRQSITLAEF 85

Query: 142 FSKTF---HKKKKENLATSYCIDV----------EEVDNSKKSEQRTSVFDRIKPPTTRP 201
           F ++F   H ++   + T +   +          EEVDNS + +QRTSVFDRIKP TTR 
Sbjct: 86  FPRSFLEDHPEEILEVTTCHTTSIVKVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRS 145

Query: 202 SVFQRMSMAATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKM 261
           SVFQR+SMA  EEENQC  ST+ R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M
Sbjct: 146 SVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREM 205

Query: 262 DNLEVKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSL 271
            +L+ K F E N D K+HSR+PSRMKRK SV INTEGSL
Sbjct: 206 KSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 244

[Close]

BLAST of Spg023905 vs. ExPASy TrEMBL
Match: A0A5A7U974 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00280 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.9e-38
Identity = 97/177 (54.80%), Postives = 129/177 (72.88%), Query Frame = 0


Query: 107 QRSKKFSQPRKPVTVKEIFSKTFHKKKKENLA------TSYCIDV-------EEVDNSKK 166
           ++ +KF QPR+ +T+ E F ++F +   E +       T+  ++V       EEVDNS +
Sbjct: 319 EKDEKFLQPRRSITLAEFFPRSFLEDHSEEILEVTACHTTSIVEVDNNYDSYEEVDNSNE 378

Query: 167 SEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPS 226
            +QRTSVFDRIKP TTR SVFQR+SMA  EEENQC +ST+TR SAF+RLS+S SKK +PS
Sbjct: 379 IKQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPMSTYTRTSAFKRLSISRSKKHRPS 438

Query: 227 TSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSL 271
           TS FDRLK+T+DQ +R+M +L+ K F E N D K++SR+PSR+KRK S+ INTEGSL
Sbjct: 439 TSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIYSRVPSRIKRKLSIDINTEGSL 495

[Close]

BLAST of Spg023905 vs. ExPASy TrEMBL
Match: A0A5D3BBF9 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00250 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.8e-37
Identity = 96/176 (54.55%), Postives = 124/176 (70.45%), Query Frame = 0


Query: 108 RSKKFSQPRKPVTVKEIFSKTFHKKKKENLA------TSYCIDV-------EEVDNSKKS 167
           + + F QPR+ +T+ E   ++F +   E +       T+  ++V       EEVDNS + 
Sbjct: 10  KDEDFLQPRRSITLAEFLPRSFLEDHPEEILEVTACHTTSIVEVDKNYDSYEEVDNSNEI 69

Query: 168 EQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPST 227
           +QRTS+FDRIKP TTR  VFQR+SMA  EEENQC  ST+ R SAF+RLS+STSKK +PST
Sbjct: 70  KQRTSIFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPST 129

Query: 228 SVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSL 271
           S FDRLK+T+DQ +R+M +L+ K F E N D K+HSR+PSRMKRK SV INTEGSL
Sbjct: 130 SAFDRLKMTNDQQQREMKSLKAKPFHEENGDDKIHSRVPSRMKRKLSVDINTEGSL 185

[Close]

BLAST of Spg023905 vs. ExPASy TrEMBL
Match: A0A5A7SZJ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18735G00010 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.7e-37
Identity = 96/176 (54.55%), Postives = 124/176 (70.45%), Query Frame = 0


Query: 108 RSKKFSQPRKPVTVKEIFSKTFHKKKKENLA------TSYCIDV-------EEVDNSKKS 167
           + + F QPR+ +T+ E   ++F +   E +       T+  ++V       EEVDNS + 
Sbjct: 10  KDEHFLQPRRSITLAEFLPRSFLEDHPEEILEVTACHTTNIVEVDNNYDSYEEVDNSNEI 69

Query: 168 EQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPST 227
           +QRTSVFDRIKP TTR  VFQR+SMA  EEENQC +ST+ R SAF+RLS+STSKK +PST
Sbjct: 70  KQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPMSTYARTSAFKRLSISTSKKHRPST 129

Query: 228 SVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSL 271
           S FDRLK+T+DQ +R+M + + K F E N D K+HSR+PSRMKRK SV INTEGSL
Sbjct: 130 SAFDRLKMTNDQQQREMKSFKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 185

[Close]

BLAST of Spg023905 vs. ExPASy TrEMBL
Match: A0A5D3CCI8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00350 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 6.2e-37
Identity = 106/219 (48.40%), Postives = 141/219 (64.38%), Query Frame = 0


Query: 82  EEKDSQIEQLKSQIENQH----IAESSQTQRSKK-------------FSQPRKPVTVKEI 141
           +E+ +   Q KS    +H    I+   + +R+KK             F QPR+ +T+ E 
Sbjct: 443 KERQTNSVQTKSHFHQKHSKGNISHKKKGRRNKKMWKPKPIKGKEEDFLQPRRSITLAEF 502

Query: 142 FSKTFHKKKKENLA------TSYCIDV-------EEVDNSKKSEQRTSVFDRIKPPTTRP 201
            S++F +   E +       T+  ++V       EEVDNS + +QRTSVFDRIKP TTR 
Sbjct: 503 LSRSFLEDHSEEVLEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRS 562

Query: 202 SVFQRMSMAATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKM 261
           SVFQR+SMA  EE+NQC  ST+ R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M
Sbjct: 563 SVFQRLSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREM 622

Query: 262 DNLEVKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSL 271
            +L+ K F E N D K+H+R+PSRMKRK SV INTEGSL
Sbjct: 623 KSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSL 661

[Close]

BLAST of Spg023905 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 8.1e-37
Identity = 106/219 (48.40%), Postives = 139/219 (63.47%), Query Frame = 0


Query: 82  EEKDSQIEQLKSQIENQH----IAESSQTQRSKKF-------------SQPRKPVTVKEI 141
           +E+ +   Q KS    +H    I+   + +R+KK               QPR+ +T+ E 
Sbjct: 26  KERQTSSVQTKSHFHQKHSKGNISHKKKGRRNKKMWKPKPIKGKDEDCLQPRQSITLAEF 85

Query: 142 FSKTF---HKKKKENLATSYCIDV----------EEVDNSKKSEQRTSVFDRIKPPTTRP 201
           F ++F   H ++   + T +   +          EEVDNS + +QRTSVFDRIKP TTR 
Sbjct: 86  FPRSFLEDHPEEILEVTTCHTTSIVKVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRS 145

Query: 202 SVFQRMSMAATEEENQCSVSTFTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKM 261
           SVFQR+SMA  EEENQC  ST+ R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M
Sbjct: 146 SVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREM 205

Query: 262 DNLEVKLFDEVNSDKKLHSRIPSRMKRKFSVLINTEGSL 271
            +L+ K F E N D K+HSR+PSRMKRK SV INTEGSL
Sbjct: 206 KSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 244

The following BLAST results are available for this feature:

BLAST of Spg023905 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050736.1	4.0e-38	54.80	retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ95700.1 retrotranspos...	[more]
KAA0050734.1	5.7e-37	54.55	gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease pol...	[more]
KAA0036008.1	9.8e-37	54.55	Retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK08944.1	1.3e-36	48.40	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0044978.1	1.7e-36	48.40	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg023905 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg023905 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U974	1.9e-38	54.80	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3BBF9	2.8e-37	54.55	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7SZJ7	4.7e-37	54.55	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3CCI8	6.2e-37	48.40	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7TQ06	8.1e-37	48.40	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]

BLAST of Spg023905 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 60..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1073..1102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1254..1283
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1160..1174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 824..854
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 912..942
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1139..1217
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1013..1034
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 960..990

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg023905.1	Spg023905.1	mRNA