Spg023859 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg023859
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Locationscaffold13: 7744419 .. 7749271 (-)
RNA-Seq ExpressionSpg023859
SyntenySpg023859
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCTTTGGCGTCGGAATCAACTTACTGTGCTTGTTAGGAGGAGGGAGCTCCTCCTCCGTTTCTTATTTTGGTTTTTTTTATAAAAAAAGAAAACAATTGAAAATAGAAGAAAGAAAAGAAGGAAATAGGAAGAAAAAGAAAATAATAATAATAATAATAATGTGGCGGGCGGTAGCTGACAGTGGTGACCGCGATAGCCGACGGAAGGTGGCTGGACTTGAAGTTGAAGAAAAAATAGATGACGATTGTTGAAGGAGAAATTTTGTCCAATCACAAATTGCCACGTCATTATCTAAAATTAATGACAAAATTACGAATAATTAAATTTGGGACCAATTATAAAGTGACATGTGTCCCAAATTTAATTTGAAGACAAAGTTGGCCAATTATAAATTTAAAGAGCCAAATTTCGATTTGATCAATTAATTAGAAAATAAATTATTTTGACCAAATTAATTAATTTGACCAATTAATTAACAAAATAATTAGTTGGATCAAATTTCGGTCTTTTAAATGTCCGGGTCATATGGTTTTGGGTCAAATATGAACCAAACCCAAGACTAAAATGGTTGAGCCCAAGACCGATAAAGCCCAAGCACAAGTTGTTAGGCCCGAAAGTCACCAGGGCCCATCCAGCGAGAACTCTATAAATAGAGGGGTTCTCCTCCATTTCAAGGGTTCAGAAATTTTAGACAGTTTAGAAATTCTACACTCTCACAAAGACAAGAGTTCAGAGTTTCAAAGCTCTCAAGCATAACCAGAGAATTCAGAGAGACTCCACCAAGTCTGAAGACCGAAGACTCTCTGCAATCCATAAGTTCAAGTGTTGAACACCCCTTGAAGACTAAAGACTCTTCAGGACATCAACACTTCTTGAAGACCCCAACACTCTTCAAGACTTCAACACTCCTTGAAGATCAAAGACTCTTCAGGACGTCAACACTTCTTGAAGATTGAAGACTCCTTCAAGATTGGAAGACTTCAAGCTCCAAGGATCCATTGAAGCTTCAGACTCGAGATCAAGCATTCCAGCCCTCAAGTGAAACACATTCACACACATAAGAGAGAGAATCAGAGGATTAAAGTTAGAGATTGTACACCCACATGCATACAACATTAATACAAATATATTGTTTATTCCACGTGTCCCCATCTTTGAAGTTACGTGTGAACAAATTGGCACGCCCAGTGGGACCATCTCTACCTCTCATCTCTCTCTCTTATCTCAAAACACAAGTGTAAACATGTTGTTCAAGACTTCTTCAATGGTCGCTGTCATGAACAAGTCTTACATGGGTTCTACTGCCCATTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGTTGGAGGCCAAGAAACAACCTTGTAGGGGGCATATACTAATGAAAAGTTTATTGTTAAGTATAGCCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACTAGAACTATGGAAGAAAGAATGACTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGAGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCGTAAAAAATCACGACAAAGGAAAGACTATAGTGCAAGATGATCAGCCACAGTGTTCTACTTCGATTGCTTCACTATCCATCCAACAACTCCAAGATATGATCACAAACTGTGTCAGAGCTCAGTACGGTGGACCTACTCAAGATTACCTCTTGTATTCCAAACCTTATACTAAGAGGATTGATAACTTGAGAACGCCAATCGGGTATCAGCCACCGAAATTTCAACAGTTTGATGGAAAGGGCAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAGGGGACCTACTAGTCAAACAGTTCGTCCGAACACTTAAAGGAAATGCTTTTGATTGGTACACTGATCTAGAACCTGAGTCAATAGACAGTTGGGAGGAACTCGAAAGAGAGTTTTTGAATCGCTTCTACAGCACTAGACGAACCGTTAGCATGTTTGAGCTCACCAACACTAAACAACGAAAAGGTGAACTCATTGTTAACTATATAAATCGCTGGAGAGCCATGAGTCTAGATTGCAAAGATCGCCTCACTGAACTCTCTTCCGTTGAGATGTGCATTCAAGGCATGCACTGGGAACTCCTCTACATCCTTAAAGGTATAAAGCCTCGCAGCTTTGAAGAACTAGCAACTCGCGCCCACGATATGGAGCTAAGTATTGCTAGTCGAGAAAACCAAGACCTTCTACTCCCTAACATGAGGAAAGAAGGAAGGAACGACGAAGAGACTGTAAAAGAATCTATGGTTGTAAACACAACCCTTCCCAAGTCGTCTTCAAAAGAAAAACGACAAACAAATGGAACGCATCACTTAACTTTAAAGGAAAGACAGAAGAAAATCTATCCTTTCCCTGATGCCGACATCCCTGATATGTTGGAACAACTACTGGAAGCGCAACTGATAGAGCTTCCTAAGTGTAAACGACCAGAAGAGATGGAGAAAGTCGATGATCCCAAGTACTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATTCTAAAGCTAGCTAAGGAAGGAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCGAATCATGCTACAGTCAAAGGAAAGGACAAACATAAAAAAAAGAAGAGTCTCAAGAAGCTTCAATCTAAAAGGCAGAGAAGTAAAGAGTTTTCTCAACCTCGACAACCGGTGACTGCAAAGGAACTCTTCTCCAAAACTTTCCACAAAAAGGAAGAAGGAAACTTTGTGACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTTTGAGAAGGGTGAACAAAGAACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAGAGAATGAGTATGGCCGCGACAGAAGAAGAACATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAGGTGTCTCCACATCGAAGAAAAGCCAATTTTCGACATCTGTCTGTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCCTGACTAATCCTACAAGTCAAGGATTTGATCAAGACCATGATGAAGATAAGAGCTTTTAAAATGTAAGAACTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGAGCAAAAATTTTGAACTACGTTATGAATTGATCCCTTTTCGTCAAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAGGTTCAGTCTCTGCAAATAAAAAAAAATGTAACAAATATTGAAGCGCGATAAGACAAATTGAAGAAACTCATCACTACTGGGGGCAACGCAGCAAATGGAAGTTGTGCACCGTTATGAATGTGAAGCTACGAGTTGGATGAATAAAAGAAGACTTCATTCCTCCAAATTTGGTGTCTCGCTCGCCTCAAGTCCGGTGTTCCACTCACCCTAAGTTCGCAGTTCCTTCCTCCCAAGTTCGAAGGTTCTCACGCGCTCCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCATTTCGCTGCAGTTCATTCTCTCAGAGTTCGAAGGTTCTCACGCTGTTTCGCTGTAGTTCCTTCTCTCCAAGTTCGAAGGTCCTCACATTGCTGCGCTGCAGTTCCTTCTCTCAAGTTTGAAGGTTCTCATGTGTTTCGCTGTAGTTCCTTCTCTCCAAGGTTCTCATGCACTGCGTTGCAGTTCCTTCTCTCCAAGTTTGAAGGTTCTCACATTGCTGCGCTGCAGTTCCTTCTCTCAAGTTTGAAGGTTCTCATGTGTTTCGCTGTAGTTCCTTCTCTCCAAGGTTCTCATACATTGCGTTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTTTCACACACGTCGATACAGTTCCTTCTCTCCAAGTTCGAAGGTTCTGACGCTGCGCTGCTTCCTTCACCACGTTCGAAGGTTCTCACGCTGCACTACTTCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTACGCTACTTCCTTCTCCAAGTTTGAAGGTTCTCATGCTACGCTAGAATGCGTTGTTGTGCTACTTTCTTCTTTAAGTTCGAAGGATCCCACATTGCGCTGTTGTGTTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGCCGTTGTGCTGCTTTTTTCTCCAAGTTTGAAAGTTTGCACCCTCTGCTGTTGCGCGCTGCTCCCTTCTCTCTCGCGGTTTGAAGGTTCTGACATTGCACTGCTTCCTTCACCACGTTCGAAGGTTCTCACGCTGCACAGCTTCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTACGCTGCTTCCTTCTCCAAGTTTGAAGGTCTTCATGCTACGCTCGGCTGCGCTGTTGCGCTACTTTCTAAAGTCCGAGGAACATGTCCTTGTACTCGTGCAGAGACGTGGCGGCGGCAAAAGTACAAGGAACATGTCCCTGTACTCATGCAGAAGGGCGTGGTGGTGA

mRNA sequence

ATGAAGCTTTGGCGTCGGAATCAACTTACTGTGCTTGTTAGGAGGAGGGAGCTCCTCCTCCGTTTCTTATTTTGCCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACTAGAACTATGGAAGAAAGAATGACTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGAGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAAGAAGTAAAGAGTTTTCTCAACCTCGACAACCGGTGACTGCAAAGGAACTCTTCTCCAAAACTTTCCACAAAAAGGAAGAAGGAAACTTTGTGACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTTTGAGAAGGGTGAACAAAGAACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAGAGAATGAGTATGGCCGCGACAGAAGAAGAACATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAGGTGTCTCCACATCGAAGAAAAGCCAATTTTCGACATCTGTCTGTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGAAGACTTCATTCCTCCAAATTTGGTGTCTCGCTCGCCTCAAGTCCGGTGTTCCACTCACCCTAAGTTCGCAGTTCCTTCCTCCCAAGTTCGAAGGTTCTCACGCGCTCCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCATTTCGCTGCAGTTCATTCTCTCAGAGTTCGAAGGTTCTCACGCTGTTTCGCTGTAGTTCCTTCTCTCCAAGTTCGAAGGTCCTCACATTGCTGCGCTGCAGTTCCTTCTCTCAAGTTTGAAGGTTCTCATGTGTTTCGCTGTAGTTCCTTCTCTCCAAGGTTCTCATGCACTGCGTTGCAGTTCCTTCTCTCCAAGTTTGAAGGTTCTCACATTGCTGCGCTGCAGTTCCTTCTCTCAAGTTTGAAGGTTCTCATGTGTTTCGCTGTAGTTCCTTCTCTCCAAGGTTCTCATACATTGCGTTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTTTCACACACGTCGATACAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCTACGCTACTTCCTTCTCCAAGTTTGAAGGTTCTCATGCTACGCTAGAATGCGTTGTTGTGCTACTTTCTTCTTTAAGTTCGAAGGATCCCACATTGCGCTGTTGTGTTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCACAGCTTCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTACGCTGCTTCCTTCTCCAAGTTTGAAGGTCTTCATGCTACGCTCGGCTGCGCTGTTGCGCTACTTTCTAAAGTCCGAGGAACATGTCCTTGTACTCGTGCAGAGACGTGGCGGCGGCAAAAGTACAAGGAACATGTCCCTGTACTCATGCAGAAGGGCGTGGTGGTGA

Coding sequence (CDS)

ATGAAGCTTTGGCGTCGGAATCAACTTACTGTGCTTGTTAGGAGGAGGGAGCTCCTCCTCCGTTTCTTATTTTGCCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACTAGAACTATGGAAGAAAGAATGACTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGAGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAAGAAGTAAAGAGTTTTCTCAACCTCGACAACCGGTGACTGCAAAGGAACTCTTCTCCAAAACTTTCCACAAAAAGGAAGAAGGAAACTTTGTGACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTTTGAGAAGGGTGAACAAAGAACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAGAGAATGAGTATGGCCGCGACAGAAGAAGAACATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAGGTGTCTCCACATCGAAGAAAAGCCAATTTTCGACATCTGTCTGTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGAAGACTTCATTCCTCCAAATTTGGTGTCTCGCTCGCCTCAAGTCCGGTGTTCCACTCACCCTAAGTTCGCAGTTCCTTCCTCCCAAGTTCGAAGGTTCTCACGCGCTCCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCATTTCGCTGCAGTTCATTCTCTCAGAGTTCGAAGGTTCTCACGCTGTTTCGCTGTAGTTCCTTCTCTCCAAGTTCGAAGGTCCTCACATTGCTGCGCTGCAGTTCCTTCTCTCAAGTTTGAAGGTTCTCATGTGTTTCGCTGTAGTTCCTTCTCTCCAAGGTTCTCATGCACTGCGTTGCAGTTCCTTCTCTCCAAGTTTGAAGGTTCTCACATTGCTGCGCTGCAGTTCCTTCTCTCAAGTTTGAAGGTTCTCATGTGTTTCGCTGTAGTTCCTTCTCTCCAAGGTTCTCATACATTGCGTTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTTTCACACACGTCGATACAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCTACGCTACTTCCTTCTCCAAGTTTGAAGGTTCTCATGCTACGCTAGAATGCGTTGTTGTGCTACTTTCTTCTTTAAGTTCGAAGGATCCCACATTGCGCTGTTGTGTTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCACAGCTTCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTACGCTGCTTCCTTCTCCAAGTTTGAAGGTCTTCATGCTACGCTCGGCTGCGCTGTTGCGCTACTTTCTAAAGTCCGAGGAACATGTCCTTGTACTCGTGCAGAGACGTGGCGGCGGCAAAAGTACAAGGAACATGTCCCTGTACTCATGCAGAAGGGCGTGGTGGTGA

Protein sequence

MKLWRRNQLTVLVRRRELLLRFLFCPLFEPDSDVVTVMMTETRTMEERMTEMQEHINTLMKAIEEKDSQIEQLKSQIENQHIAESSQTQRSKEFSQPRQPVTAKELFSKTFHKKEEGNFVTSYCIDVEEVDNFEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVCDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKKTSFLQIWCLARLKSGVPLTLSSQFLPPKFEGSHALRCSSFLQVRRFSRASLQFLLPKFEGSHALRCSSFSPSSKVLTHFAAVHSLRVRRFSRCFAVVPSLQVRRSSHCCAAVPSLKFEGSHVFRCSSFSPRFSCTALQFLLSKFEGSHIAALQFLLSSLKVLMCFAVVPSLQGSHTLRCSSFSPSSKVFTHVDTVPSLQVRRFSRYATSFSKFEGSHATLECVVVLLSSLSSKDPTLRCCVASFTKFEGSHAAQLRCSFSKFEGSHATLLPSPSLKVFMLRSAALLRYFLKSEEHVLVLVQRRGGGKSTRNMSLYSCRRAWW
Homology
[Close]
BLAST of Spg023859 vs. NCBI nr
Match: KAA0055462.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 156.4 bits (394), Expect = 7.5e-34
Identity = 91/176 (51.70%), Postives = 119/176 (67.61%), Query Frame = 0 

Query: 90  RSKEFSQPRQPVTAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNFEKG 149
           + ++F QPR+ +T  E  S++F   H +E       +   +          EEVDN  + 
Sbjct: 486 KEEDFLQPRRSITLAEFLSRSFLEDHSEEVLEVTACHTTSIVEVDNNYDSYEEVDNSNEI 545

Query: 150 EQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFST 209
           +QRTSVFDRIKP TTR SVFQR+SMA  EE++QC  ST  R SAF+RL +STSKK + ST
Sbjct: 546 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPST 605

Query: 210 SVCDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 253
           S  DRLK+TNDQ +R+M +L+ K F E N+D+K+H+ +PSRMKRK SV INTEGSL
Sbjct: 606 STFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSL 661

[Close]
BLAST of Spg023859 vs. NCBI nr
Match: KAA0051327.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 155.2 bits (391), Expect = 1.7e-33
Identity = 106/231 (45.89%), Postives = 140/231 (60.61%), Query Frame = 0 

Query: 90  RSKEFSQPRQPVTAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNFEKG 149
           + ++F +PR+ +T  E F ++F   H KE       + + +          EEV+N  + 
Sbjct: 10  KDEDFLRPRRLITLTEFFPRSFLEDHPKEILEVTACHTVSIVEVGNNYVSSEEVNNSNEI 69

Query: 150 EQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFST 209
           +QRTSVFDRIKP TTR SVFQR+SMA  EEE+QC  STSTR SAF+RL +STSKK + ST
Sbjct: 70  KQRTSVFDRIKPSTTRSSVFQRLSMATKEEENQCPTSTSTRTSAFKRLTISTSKKDRPST 129

Query: 210 SVCDRLKVTNDQPKRKMDNLELKLFDEVNNDE-KLHSSIPSRMKRKFSVLINTEGSLKKT 269
           S+ D LK+TNDQ +R+M  L+ K+F E NND+ K+HS + SRMKRK SV I+TEGSL   
Sbjct: 130 SIFDHLKMTNDQ-QREMKILKTKIFHEKNNDDGKIHSRVSSRMKRKLSVDISTEGSLTVK 189

Query: 270 SFLQIWCLARLKSGVPLTLSSQFLPPKFEGSHALRCSSF--LQVRRFSRAS 305
             L I+  +  + GV   LS       +      R  SF  LQ R  S +S
Sbjct: 190 PRLIIYTNSTNEEGVASPLSKMLTSELYSSPICCRRGSFHVLQPRGSSSSS 239

[Close]
BLAST of Spg023859 vs. NCBI nr
Match: TYK00108.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.5 bits (389), Expect = 2.9e-33
Identity = 92/177 (51.98%), Postives = 117/177 (66.10%), Query Frame = 0 

Query: 90  RSKEFSQPRQPVTAKELFSKTF--------------HKKEEGNFVTSYCIDVEEVDNFEK 149
           + ++F QPRQ +T  E F ++F              H      F  +Y    EEVDN  +
Sbjct: 69  KDEDFLQPRQSITLAEFFPRSFLEDHLEEILEVTACHTTSFVEFDKNY-DSYEEVDNSNE 128

Query: 150 GEQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFS 209
            +QRTSVFDRIKP TTR SVFQR+SMA  EE++QC  ST TR SAF+RL +STSKK + S
Sbjct: 129 IKQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTCTRTSAFKRLSISTSKKDRPS 188

Query: 210 TSVCDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 253
           TS  DR+K+ NDQ +R+M +L+ K F E N+D+K+HS +PSRMKRK  V INTEGSL
Sbjct: 189 TSAFDRVKMINDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLFVDINTEGSL 244

[Close]
BLAST of Spg023859 vs. NCBI nr
Match: KAA0050734.1 (gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 153.3 bits (386), Expect = 6.4e-33
Identity = 90/176 (51.14%), Postives = 118/176 (67.05%), Query Frame = 0 

Query: 90  RSKEFSQPRQPVTAKELFSKTFHKKEEGNFV------TSYCIDV-------EEVDNFEKG 149
           + ++F QPR+ +T  E   ++F +      +      T+  ++V       EEVDN  + 
Sbjct: 10  KDEDFLQPRRSITLAEFLPRSFLEDHPEEILEVTACHTTSIVEVDKNYDSYEEVDNSNEI 69

Query: 150 EQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFST 209
           +QRTS+FDRIKP TTR  VFQR+SMA  EEE+QC  ST  R SAF+RL +STSKK + ST
Sbjct: 70  KQRTSIFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPST 129

Query: 210 SVCDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 253
           S  DRLK+TNDQ +R+M +L+ K F E N D+K+HS +PSRMKRK SV INTEGSL
Sbjct: 130 SAFDRLKMTNDQQQREMKSLKAKPFHEENGDDKIHSRVPSRMKRKLSVDINTEGSL 185

[Close]
BLAST of Spg023859 vs. NCBI nr
Match: KAA0036008.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 152.5 bits (384), Expect = 1.1e-32
Identity = 90/176 (51.14%), Postives = 117/176 (66.48%), Query Frame = 0 

Query: 90  RSKEFSQPRQPVTAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNFEKG 149
           + + F QPR+ +T  E   ++F   H +E       +  ++          EEVDN  + 
Sbjct: 10  KDEHFLQPRRSITLAEFLPRSFLEDHPEEILEVTACHTTNIVEVDNNYDSYEEVDNSNEI 69

Query: 150 EQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFST 209
           +QRTSVFDRIKP TTR  VFQR+SMA  EEE+QC +ST  R SAF+RL +STSKK + ST
Sbjct: 70  KQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPMSTYARTSAFKRLSISTSKKHRPST 129

Query: 210 SVCDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 253
           S  DRLK+TNDQ +R+M + + K F E N+D+K+HS +PSRMKRK SV INTEGSL
Sbjct: 130 SAFDRLKMTNDQQQREMKSFKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 185

[Close]
BLAST of Spg023859 vs. ExPASy TrEMBL
Match: A0A5A7UI09 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold221G00340 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.7e-34
Identity = 91/176 (51.70%), Postives = 119/176 (67.61%), Query Frame = 0 

Query: 90  RSKEFSQPRQPVTAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNFEKG 149
           + ++F QPR+ +T  E  S++F   H +E       +   +          EEVDN  + 
Sbjct: 486 KEEDFLQPRRSITLAEFLSRSFLEDHSEEVLEVTACHTTSIVEVDNNYDSYEEVDNSNEI 545

Query: 150 EQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFST 209
           +QRTSVFDRIKP TTR SVFQR+SMA  EE++QC  ST  R SAF+RL +STSKK + ST
Sbjct: 546 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPST 605

Query: 210 SVCDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 253
           S  DRLK+TNDQ +R+M +L+ K F E N+D+K+H+ +PSRMKRK SV INTEGSL
Sbjct: 606 STFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSL 661

[Close]
BLAST of Spg023859 vs. ExPASy TrEMBL
Match: A0A5A7UA77 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00440 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 8.1e-34
Identity = 106/231 (45.89%), Postives = 140/231 (60.61%), Query Frame = 0 

Query: 90  RSKEFSQPRQPVTAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNFEKG 149
           + ++F +PR+ +T  E F ++F   H KE       + + +          EEV+N  + 
Sbjct: 10  KDEDFLRPRRLITLTEFFPRSFLEDHPKEILEVTACHTVSIVEVGNNYVSSEEVNNSNEI 69

Query: 150 EQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFST 209
           +QRTSVFDRIKP TTR SVFQR+SMA  EEE+QC  STSTR SAF+RL +STSKK + ST
Sbjct: 70  KQRTSVFDRIKPSTTRSSVFQRLSMATKEEENQCPTSTSTRTSAFKRLTISTSKKDRPST 129

Query: 210 SVCDRLKVTNDQPKRKMDNLELKLFDEVNNDE-KLHSSIPSRMKRKFSVLINTEGSLKKT 269
           S+ D LK+TNDQ +R+M  L+ K+F E NND+ K+HS + SRMKRK SV I+TEGSL   
Sbjct: 130 SIFDHLKMTNDQ-QREMKILKTKIFHEKNNDDGKIHSRVSSRMKRKLSVDISTEGSLTVK 189

Query: 270 SFLQIWCLARLKSGVPLTLSSQFLPPKFEGSHALRCSSF--LQVRRFSRAS 305
             L I+  +  + GV   LS       +      R  SF  LQ R  S +S
Sbjct: 190 PRLIIYTNSTNEEGVASPLSKMLTSELYSSPICCRRGSFHVLQPRGSSSSS 239

[Close]
BLAST of Spg023859 vs. ExPASy TrEMBL
Match: A0A5D3BLW3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00640 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.4e-33
Identity = 92/177 (51.98%), Postives = 117/177 (66.10%), Query Frame = 0 

Query: 90  RSKEFSQPRQPVTAKELFSKTF--------------HKKEEGNFVTSYCIDVEEVDNFEK 149
           + ++F QPRQ +T  E F ++F              H      F  +Y    EEVDN  +
Sbjct: 69  KDEDFLQPRQSITLAEFFPRSFLEDHLEEILEVTACHTTSFVEFDKNY-DSYEEVDNSNE 128

Query: 150 GEQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFS 209
            +QRTSVFDRIKP TTR SVFQR+SMA  EE++QC  ST TR SAF+RL +STSKK + S
Sbjct: 129 IKQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTCTRTSAFKRLSISTSKKDRPS 188

Query: 210 TSVCDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 253
           TS  DR+K+ NDQ +R+M +L+ K F E N+D+K+HS +PSRMKRK  V INTEGSL
Sbjct: 189 TSAFDRVKMINDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLFVDINTEGSL 244

[Close]
BLAST of Spg023859 vs. ExPASy TrEMBL
Match: A0A5D3BBF9 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00250 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 3.1e-33
Identity = 90/176 (51.14%), Postives = 118/176 (67.05%), Query Frame = 0 

Query: 90  RSKEFSQPRQPVTAKELFSKTFHKKEEGNFV------TSYCIDV-------EEVDNFEKG 149
           + ++F QPR+ +T  E   ++F +      +      T+  ++V       EEVDN  + 
Sbjct: 10  KDEDFLQPRRSITLAEFLPRSFLEDHPEEILEVTACHTTSIVEVDKNYDSYEEVDNSNEI 69

Query: 150 EQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFST 209
           +QRTS+FDRIKP TTR  VFQR+SMA  EEE+QC  ST  R SAF+RL +STSKK + ST
Sbjct: 70  KQRTSIFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPST 129

Query: 210 SVCDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 253
           S  DRLK+TNDQ +R+M +L+ K F E N D+K+HS +PSRMKRK SV INTEGSL
Sbjct: 130 SAFDRLKMTNDQQQREMKSLKAKPFHEENGDDKIHSRVPSRMKRKLSVDINTEGSL 185

[Close]
BLAST of Spg023859 vs. ExPASy TrEMBL
Match: A0A5A7SZJ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18735G00010 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 5.3e-33
Identity = 90/176 (51.14%), Postives = 117/176 (66.48%), Query Frame = 0 

Query: 90  RSKEFSQPRQPVTAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNFEKG 149
           + + F QPR+ +T  E   ++F   H +E       +  ++          EEVDN  + 
Sbjct: 10  KDEHFLQPRRSITLAEFLPRSFLEDHPEEILEVTACHTTNIVEVDNNYDSYEEVDNSNEI 69

Query: 150 EQRTSVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFST 209
           +QRTSVFDRIKP TTR  VFQR+SMA  EEE+QC +ST  R SAF+RL +STSKK + ST
Sbjct: 70  KQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPMSTYARTSAFKRLSISTSKKHRPST 129

Query: 210 SVCDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 253
           S  DRLK+TNDQ +R+M + + K F E N+D+K+HS +PSRMKRK SV INTEGSL
Sbjct: 130 SAFDRLKMTNDQQQREMKSFKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 185

The following BLAST results are available for this feature:
BLAST of Spg023859 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0055462.17.5e-3451.70retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0051327.11.7e-3345.89Retrotransposon gag protein [Cucumis melo var. makuwa][more]
TYK00108.12.9e-3351.98retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0050734.16.4e-3351.14gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease pol... [more]
KAA0036008.11.1e-3251.14Retrotransposon gag protein [Cucumis melo var. makuwa][more]
BLAST of Spg023859 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg023859 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UI093.7e-3451.70Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5A7UA778.1e-3445.89Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5D3BLW31.4e-3351.98Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5D3BBF93.1e-3351.14Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7SZJ75.3e-3351.14Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
BLAST of Spg023859 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 56..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg023859.1Spg023859.1mRNA