Spg023828 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg023828
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	ORF43m
Location	scaffold13: 1044528 .. 1044857 (+)
RNA-Seq Expression	Spg023828
Synteny	Spg023828

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGCAATGAAGCAAGCCAAGATCAATGAGGAGTTGGTCAGATCTAGTATGGATCGTACATGGACGATAGTTGGAGTCAGTGGCTCTCTTAGGGTTCTCTCATATGCGATCCATGGGGAAAAGGATCAAGTTGGCCCTTGCAAACGGCTTGATGCACTATCTCCCTTCAACCATTTGAGCGAAATGCGGCAAAATGAAGGAAAATCCTTGGACCGAACCCATCGTCTCCACCCCGTGGGAACTATGAGATCACCCGAAGGACGGCTTTGGTATCCAGGGGTCGTAGACCAACCATTAGAACCTTGTCCAATAAGTGGAACGTATTAG

mRNA sequence

ATGAATGCAATGAAGCAAGCCAAGATCAATGAGGAGTTGGTCAGATCTAGTATGGATCGTACATGGACGATAGTTGGAGTCAGTGGCTCTCTTAGGGTTCTCTCATATGCGATCCATGGGGAAAAGGATCAAGTTGGCCCTTGCAAACGGCTTGATGCACTATCTCCCTTCAACCATTTGAGCGAAATGCGGCAAAATGAAGGAAAATCCTTGGACCGAACCCATCGTCTCCACCCCGTGGGAACTATGAGATCACCCGAAGGACGGCTTTGGTATCCAGGGGTCGTAGACCAACCATTAGAACCTTGTCCAATAAGTGGAACGTATTAG

Coding sequence (CDS)

ATGAATGCAATGAAGCAAGCCAAGATCAATGAGGAGTTGGTCAGATCTAGTATGGATCGTACATGGACGATAGTTGGAGTCAGTGGCTCTCTTAGGGTTCTCTCATATGCGATCCATGGGGAAAAGGATCAAGTTGGCCCTTGCAAACGGCTTGATGCACTATCTCCCTTCAACCATTTGAGCGAAATGCGGCAAAATGAAGGAAAATCCTTGGACCGAACCCATCGTCTCCACCCCGTGGGAACTATGAGATCACCCGAAGGACGGCTTTGGTATCCAGGGGTCGTAGACCAACCATTAGAACCTTGTCCAATAAGTGGAACGTATTAG

Protein sequence

MNAMKQAKINEELVRSSMDRTWTIVGVSGSLRVLSYAIHGEKDQVGPCKRLDALSPFNHLSEMRQNEGKSLDRTHRLHPVGTMRSPEGRLWYPGVVDQPLEPCPISGTY

Homology

[Close]

BLAST of Spg023828 vs. NCBI nr
Match: QHE65624.1 (ORF43m [Nitraria roborowskii] >QHE65704.1 ORF43m [Nitraria sibirica] >QHE65784.1 ORF43m [Nitraria tangutorum] >QHE65637.1 ORF43m [Nitraria roborowskii] >QHE65717.1 ORF43m [Nitraria sibirica])

HSP 1 Score: 137.9 bits (346), Expect = 5.3e-29
Identity = 64/82 (78.05%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 18  MDRTWTIVGVSGSLRVLSYAIHGEKDQVGPCKRLDALSPFNHLSEMRQNEGKSLDRTHRL 77
           MDRTWT+VGV GSLRV S  I GE+DQVGPC++LDALSPFN LSEMRQ EGKS+DR HRL
Sbjct: 1   MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60

Query: 78  HPVGTMRSPEGRLWYPGVVDQP 100
           HPVGT RSP+GRL YPGV D+P
Sbjct: 61  HPVGTTRSPQGRLRYPGVADRP 82

[Close]

BLAST of Spg023828 vs. NCBI nr
Match: ERM97427.1 (hypothetical protein AMTR_s02909p00006680 [Amborella trichopoda])

HSP 1 Score: 136.0 bits (341), Expect = 2.0e-28
Identity = 63/82 (76.83%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 18  MDRTWTIVGVSGSLRVLSYAIHGEKDQVGPCKRLDALSPFNHLSEMRQNEGKSLDRTHRL 77
           MDRTWT+VGV GSLRV S  I GE+DQVGPC++LDALSPFN LSEMRQ EGKS+DR HRL
Sbjct: 1   MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60

Query: 78  HPVGTMRSPEGRLWYPGVVDQP 100
           HPVGT RSP+GRL +PGV D+P
Sbjct: 61  HPVGTTRSPQGRLRHPGVADRP 82

[Close]

BLAST of Spg023828 vs. NCBI nr
Match: VVW85592.1 (unnamed protein product, partial [Nymphaea colorata] >VVW88475.1 unnamed protein product, partial [Nymphaea colorata] >VVW91204.1 unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 134.4 bits (337), Expect = 5.8e-28
Identity = 63/82 (76.83%), Postives = 70/82 (85.37%), Query Frame = 0


Query: 18  MDRTWTIVGVSGSLRVLSYAIHGEKDQVGPCKRLDALSPFNHLSEMRQNEGKSLDRTHRL 77
           MDRTWTIVGV GS RV S  I GE+DQVGPC++LDALSPFN LSEMRQ EGKS+DR HRL
Sbjct: 1   MDRTWTIVGVGGSPRVTSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60

Query: 78  HPVGTMRSPEGRLWYPGVVDQP 100
           HPVGT RSP+GRL +PGV D+P
Sbjct: 61  HPVGTTRSPQGRLRHPGVTDRP 82

[Close]

BLAST of Spg023828 vs. NCBI nr
Match: VVW85218.1 (unnamed protein product, partial [Nymphaea colorata] >VVW87587.1 unnamed protein product, partial [Nymphaea colorata] >VVW88662.1 unnamed protein product, partial [Nymphaea colorata] >VVW89152.1 unnamed protein product, partial [Nymphaea colorata] >VVW89696.1 unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 134.4 bits (337), Expect = 5.8e-28
Identity = 63/82 (76.83%), Postives = 70/82 (85.37%), Query Frame = 0


Query: 18  MDRTWTIVGVSGSLRVLSYAIHGEKDQVGPCKRLDALSPFNHLSEMRQNEGKSLDRTHRL 77
           MDRTWTIVGV GS RV S  I GE+DQVGPC++LDALSPFN LSEMRQ EGKS+DR HRL
Sbjct: 1   MDRTWTIVGVGGSPRVTSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60

Query: 78  HPVGTMRSPEGRLWYPGVVDQP 100
           HPVGT RSP+GRL +PGV D+P
Sbjct: 61  HPVGTTRSPQGRLRHPGVTDRP 82

[Close]

BLAST of Spg023828 vs. NCBI nr
Match: PEK97815.1 (hypothetical protein CN614_31275 [Bacillus toyonensis])

HSP 1 Score: 133.7 bits (335), Expect = 9.9e-28
Identity = 61/82 (74.39%), Postives = 70/82 (85.37%), Query Frame = 0


Query: 18  MDRTWTIVGVSGSLRVLSYAIHGEKDQVGPCKRLDALSPFNHLSEMRQNEGKSLDRTHRL 77
           MDRTWT+VGV GS RV S  IHGE+DQVGPC++LDALSPFN LSEMRQ EGKS+D+ H L
Sbjct: 1   MDRTWTVVGVGGSPRVPSSGIHGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDQPHHL 60

Query: 78  HPVGTMRSPEGRLWYPGVVDQP 100
           HPVGT RSP+GRL +PGV D+P
Sbjct: 61  HPVGTTRSPQGRLRHPGVTDRP 82

[Close]

BLAST of Spg023828 vs. ExPASy TrEMBL
Match: A0A6B9QFK3 (ORF43m OS=Nitraria tangutorum OX=357929 GN=trnA-UGC PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.5e-29
Identity = 64/82 (78.05%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 18  MDRTWTIVGVSGSLRVLSYAIHGEKDQVGPCKRLDALSPFNHLSEMRQNEGKSLDRTHRL 77
           MDRTWT+VGV GSLRV S  I GE+DQVGPC++LDALSPFN LSEMRQ EGKS+DR HRL
Sbjct: 1   MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60

Query: 78  HPVGTMRSPEGRLWYPGVVDQP 100
           HPVGT RSP+GRL YPGV D+P
Sbjct: 61  HPVGTTRSPQGRLRYPGVADRP 82

[Close]

BLAST of Spg023828 vs. ExPASy TrEMBL
Match: A0A6B9QF48 (ORF43m OS=Nitraria roborowskii OX=357932 GN=trnA-UGC PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.5e-29
Identity = 64/82 (78.05%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 18  MDRTWTIVGVSGSLRVLSYAIHGEKDQVGPCKRLDALSPFNHLSEMRQNEGKSLDRTHRL 77
           MDRTWT+VGV GSLRV S  I GE+DQVGPC++LDALSPFN LSEMRQ EGKS+DR HRL
Sbjct: 1   MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60

Query: 78  HPVGTMRSPEGRLWYPGVVDQP 100
           HPVGT RSP+GRL YPGV D+P
Sbjct: 61  HPVGTTRSPQGRLRYPGVADRP 82

[Close]

BLAST of Spg023828 vs. ExPASy TrEMBL
Match: A0A6B9QGL2 (ORF43m OS=Nitraria sibirica OX=357931 GN=trnA-UGC PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.5e-29
Identity = 64/82 (78.05%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 18  MDRTWTIVGVSGSLRVLSYAIHGEKDQVGPCKRLDALSPFNHLSEMRQNEGKSLDRTHRL 77
           MDRTWT+VGV GSLRV S  I GE+DQVGPC++LDALSPFN LSEMRQ EGKS+DR HRL
Sbjct: 1   MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60

Query: 78  HPVGTMRSPEGRLWYPGVVDQP 100
           HPVGT RSP+GRL YPGV D+P
Sbjct: 61  HPVGTTRSPQGRLRYPGVADRP 82

[Close]

BLAST of Spg023828 vs. ExPASy TrEMBL
Match: U5CKY2 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s02909p00006680 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 9.7e-29
Identity = 63/82 (76.83%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 18  MDRTWTIVGVSGSLRVLSYAIHGEKDQVGPCKRLDALSPFNHLSEMRQNEGKSLDRTHRL 77
           MDRTWT+VGV GSLRV S  I GE+DQVGPC++LDALSPFN LSEMRQ EGKS+DR HRL
Sbjct: 1   MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60

Query: 78  HPVGTMRSPEGRLWYPGVVDQP 100
           HPVGT RSP+GRL +PGV D+P
Sbjct: 61  HPVGTTRSPQGRLRHPGVADRP 82

[Close]

BLAST of Spg023828 vs. ExPASy TrEMBL
Match: A0A5K1HD35 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS29268 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.8e-28
Identity = 63/82 (76.83%), Postives = 70/82 (85.37%), Query Frame = 0


Query: 18  MDRTWTIVGVSGSLRVLSYAIHGEKDQVGPCKRLDALSPFNHLSEMRQNEGKSLDRTHRL 77
           MDRTWTIVGV GS RV S  I GE+DQVGPC++LDALSPFN LSEMRQ EGKS+DR HRL
Sbjct: 1   MDRTWTIVGVGGSPRVTSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60

Query: 78  HPVGTMRSPEGRLWYPGVVDQP 100
           HPVGT RSP+GRL +PGV D+P
Sbjct: 61  HPVGTTRSPQGRLRHPGVTDRP 82

The following BLAST results are available for this feature:

BLAST of Spg023828 vs. NCBI nr


Match Name	E-value	Identity	Description
QHE65624.1	5.3e-29	78.05	ORF43m [Nitraria roborowskii] >QHE65704.1 ORF43m [Nitraria sibirica] >QHE65784.1...	[more]
ERM97427.1	2.0e-28	76.83	hypothetical protein AMTR_s02909p00006680 [Amborella trichopoda]	[more]
VVW85592.1	5.8e-28	76.83	unnamed protein product, partial [Nymphaea colorata] >VVW88475.1 unnamed protein...	[more]
VVW85218.1	5.8e-28	76.83	unnamed protein product, partial [Nymphaea colorata] >VVW87587.1 unnamed protein...	[more]
PEK97815.1	9.9e-28	74.39	hypothetical protein CN614_31275 [Bacillus toyonensis]	[more]

BLAST of Spg023828 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg023828 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6B9QFK3	2.5e-29	78.05	ORF43m OS=Nitraria tangutorum OX=357929 GN=trnA-UGC PE=4 SV=1	[more]
A0A6B9QF48	2.5e-29	78.05	ORF43m OS=Nitraria roborowskii OX=357932 GN=trnA-UGC PE=4 SV=1	[more]
A0A6B9QGL2	2.5e-29	78.05	ORF43m OS=Nitraria sibirica OX=357931 GN=trnA-UGC PE=4 SV=1	[more]
U5CKY2	9.7e-29	76.83	Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s02909p00006680...	[more]
A0A5K1HD35	2.8e-28	76.83	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS29...	[more]

BLAST of Spg023828 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg023828.1	Spg023828.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006101	citrate metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0004108	citrate (Si)-synthase activity
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0032549	ribonucleoside binding