Spg023823 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg023823
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold13: 7714080 .. 7714481 (-)
RNA-Seq ExpressionSpg023823
SyntenySpg023823
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAAACTTCCCATATTGTTTCTTTTGCTTCTTTGCCTCTTCCTCTTCTTCTTCTATTTCTCATCCCCCTTGGTGAGTTCCGAGCACCGAAACTTCCTCCTTCAATTGTACGAAACCATTTGGGTGCTGAAATCGAGTCGTGCATCGGTGTTTCTTGCATCTAATGCCATCATTTTCATCCTCTTTGGTGAGAAGTTTAAGCGGTCACCGAGACAAAAAGGAACAGAAGAACTGGTAGAAAGCTGTAATAGTGGACGCGACGATGAATTGGTTAGTCATGAAACTCGTGTTGATGTTAGTTGTGATGAAGATAATGGTGAAGAAGGGTTTCGAGAGTTTATTGACATGATGAATAACTCTTTTTGGAGGGAAGAATTGGTTTATGATAGGTTTCTCTAG

mRNA sequence

ATGAAAAAACTTCCCATATTGTTTCTTTTGCTTCTTTGCCTCTTCCTCTTCTTCTTCTATTTCTCATCCCCCTTGGTGAGTTCCGAGCACCGAAACTTCCTCCTTCAATTGTACGAAACCATTTGGGTGCTGAAATCGAGTCGTGCATCGGTGTTTCTTGCATCTAATGCCATCATTTTCATCCTCTTTGGTGAGAAGTTTAAGCGGTCACCGAGACAAAAAGGAACAGAAGAACTGGTAGAAAGCTGTAATAGTGGACGCGACGATGAATTGGTTAGTCATGAAACTCGTGTTGATGTTAGTTGTGATGAAGATAATGGTGAAGAAGGGTTTCGAGAGTTTATTGACATGATGAATAACTCTTTTTGGAGGGAAGAATTGGTTTATGATAGGTTTCTCTAG

Coding sequence (CDS)

ATGAAAAAACTTCCCATATTGTTTCTTTTGCTTCTTTGCCTCTTCCTCTTCTTCTTCTATTTCTCATCCCCCTTGGTGAGTTCCGAGCACCGAAACTTCCTCCTTCAATTGTACGAAACCATTTGGGTGCTGAAATCGAGTCGTGCATCGGTGTTTCTTGCATCTAATGCCATCATTTTCATCCTCTTTGGTGAGAAGTTTAAGCGGTCACCGAGACAAAAAGGAACAGAAGAACTGGTAGAAAGCTGTAATAGTGGACGCGACGATGAATTGGTTAGTCATGAAACTCGTGTTGATGTTAGTTGTGATGAAGATAATGGTGAAGAAGGGTTTCGAGAGTTTATTGACATGATGAATAACTCTTTTTGGAGGGAAGAATTGGTTTATGATAGGTTTCTCTAG

Protein sequence

MKKLPILFLLLLCLFLFFFYFSSPLVSSEHRNFLLQLYETIWVLKSSRASVFLASNAIIFILFGEKFKRSPRQKGTEELVESCNSGRDDELVSHETRVDVSCDEDNGEEGFREFIDMMNNSFWREELVYDRFL
Homology
BLAST of Spg023823 vs. NCBI nr
Match: KAE8646698.1 (hypothetical protein Csa_005140 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 4.6e-19
Identity = 72/145 (49.66%), Postives = 94/145 (64.83%), Query Frame = 0

Query: 1   MKKLPILFLLLLCLFLFFFYFSSPLVSSEHRNFLLQLYETIWVLKSSRASVFLASNAIIF 60
           MKKL ++FL ++ +  FF +F   +VS  HRN + Q  E + V+KSSRAS+FLASN II 
Sbjct: 1   MKKLQVIFLCIIIVLSFFLFF---MVSFTHRNVVNQSMEIVLVVKSSRASIFLASNTIIL 60

Query: 61  ILFGEKFKRSPRQKGTEELVESCNSG--RDDELVSHE-TRVDVSCDEDNGEEGF------ 120
           ILFG+K K+   ++  EE  + C SG   D EL S+E   V+ SCDED  EEG       
Sbjct: 61  ILFGKKLKQLSSKEEEEERCKDCCSGCSDDHELNSYEMICVEDSCDEDYCEEGMIQDDLE 120

Query: 121 ---REFIDMMNNSFWREELVYDRFL 134
              +EFIDMM N+FWREEL++DRFL
Sbjct: 121 KKAQEFIDMM-NAFWREELIHDRFL 141

BLAST of Spg023823 vs. NCBI nr
Match: KAA0040002.1 (hypothetical protein E6C27_scaffold122G002850 [Cucumis melo var. makuwa] >TYK24499.1 hypothetical protein E5676_scaffold266G00410 [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 2.3e-18
Identity = 61/117 (52.14%), Postives = 80/117 (68.38%), Query Frame = 0

Query: 25  LVSSEHRNFLLQLYETIWVLKSSRASVFLASNAIIFILFGEKFKRSPRQKGTEELVESCN 84
           +VSS+HRNF+++L E IWV+KSSRAS+FLASN I+ ILF EK KR   ++      + C+
Sbjct: 1   MVSSKHRNFIIRLIEIIWVVKSSRASMFLASNTIVLILFWEKLKRLSSKEKESWCKDFCS 60

Query: 85  SGRDDELVSHE-TRVDVSCDE-------DNGEEGFREFIDMMNNSFWREELVYDRFL 134
              D EL S E   V+ SCDE       D+ E+  +EFIDMM N+FWREEL++DRFL
Sbjct: 61  RHSDGELNSEEIICVEDSCDEGCEEGIQDDLEKKAQEFIDMM-NAFWREELIHDRFL 116

BLAST of Spg023823 vs. NCBI nr
Match: KAG6593708.1 (hypothetical protein SDJN03_13184, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.4 bits (176), Expect = 3.3e-09
Identity = 49/86 (56.98%), Postives = 57/86 (66.28%), Query Frame = 0

Query: 59  IFILFGEKFKRSP-RQKGTEELVESCN--SGRDDELVSHETRVDVSCDEDNGEEGF---- 118
           +FILFGEKFK+SP  +KG  E VES      RDDEL++H   V  SCDED G+E F    
Sbjct: 1   MFILFGEKFKQSPSEEKGIGEQVESYEDYDRRDDELITHNIYVYDSCDED-GDERFQDDF 60

Query: 119 ----REFIDMMNNSFWREELVYDRFL 134
               +EFI+MM  SFWREELV DRFL
Sbjct: 61  EKKAQEFIEMM-YSFWREELVCDRFL 84

BLAST of Spg023823 vs. ExPASy TrEMBL
Match: A0A5A7T9A6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00410 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 61/117 (52.14%), Postives = 80/117 (68.38%), Query Frame = 0

Query: 25  LVSSEHRNFLLQLYETIWVLKSSRASVFLASNAIIFILFGEKFKRSPRQKGTEELVESCN 84
           +VSS+HRNF+++L E IWV+KSSRAS+FLASN I+ ILF EK KR   ++      + C+
Sbjct: 1   MVSSKHRNFIIRLIEIIWVVKSSRASMFLASNTIVLILFWEKLKRLSSKEKESWCKDFCS 60

Query: 85  SGRDDELVSHE-TRVDVSCDE-------DNGEEGFREFIDMMNNSFWREELVYDRFL 134
              D EL S E   V+ SCDE       D+ E+  +EFIDMM N+FWREEL++DRFL
Sbjct: 61  RHSDGELNSEEIICVEDSCDEGCEEGIQDDLEKKAQEFIDMM-NAFWREELIHDRFL 116

BLAST of Spg023823 vs. ExPASy TrEMBL
Match: A0A0A0K9S4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G077350 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.6e-17
Identity = 63/121 (52.07%), Postives = 79/121 (65.29%), Query Frame = 0

Query: 25  LVSSEHRNFLLQLYETIWVLKSSRASVFLASNAIIFILFGEKFKRSPRQKGTEELVESCN 84
           +VS  HRN + Q  E + V+KSSRAS+FLASN II ILFG+K K+   ++  EE  + C 
Sbjct: 1   MVSFTHRNVVNQSMEIVLVVKSSRASIFLASNTIILILFGKKLKQLSSKEEEEERCKDCC 60

Query: 85  SG--RDDELVSHE-TRVDVSCDEDNGEEGF---------REFIDMMNNSFWREELVYDRF 134
           SG   D EL S+E   V+ SCDED  EEG          +EFIDMM N+FWREEL++DRF
Sbjct: 61  SGCSDDHELNSYEMICVEDSCDEDYCEEGMIQDDLEKKAQEFIDMM-NAFWREELIHDRF 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8646698.14.6e-1949.66hypothetical protein Csa_005140 [Cucumis sativus][more]
KAA0040002.12.3e-1852.14hypothetical protein E6C27_scaffold122G002850 [Cucumis melo var. makuwa] >TYK244... [more]
KAG6593708.13.3e-0956.98hypothetical protein SDJN03_13184, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T9A61.1e-1852.14Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K9S43.6e-1752.07Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G077350 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg023823.1Spg023823.1mRNA