Spg023795 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg023795
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold13: 12018385 .. 12020184 (-)
RNA-Seq ExpressionSpg023795
SyntenySpg023795
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTGCAGAAGAGTAGGGGTTCCAGTGGATGAGGGAGATGTTATCCTGTTTGACAAGGGAATTATAGATACGCCTAACTTGGCGCGGCTTCAGCGTATGCAGGAGGCACGTCAAGGTGGGCTTATCTACGGCATCAACACGGTTTTAGAACAACTGGCACTTTCGGCCAGCAGGCAAGAGTTTGCCGAGAGGCAAGCTTTAACCTTCTGGAACTATGTTAGAAATCGTGATGCCAATCTGAAGAAGGCGCTGCAAGAAAATTTTTCCAAGCCGTATCCAGCCCTTCCAGCATTCCCTGAGGATCTTTTGAACCCTTGGATTCCACCCCCACCTGTTGAAAGAGAAGAGGAGGATGATGAAGAGCAGGGTCAGGAAGACTGACTTATGTGATGATTTTGAGCGAGCATTACTTTTGTTTTTCCATTTTTGTTTGCTCGCGCATATCTGACCCCGCTTGATAATATGTTTGCTTGTTTCTTTTTAATTTTTCTGCTGCTAAAAATATATCTCTGCTTATGTAATTTCTTTTCTATGCTTTTAATGAAATTTCCGAAGTTATTTCTGTTCCATAAGCACTGAGTAAATCTAACTTAACTAATTCCTTCTGAATTTTGGAAGCTTGGACTGGCTAAGCTTAATTAGATCAAGGAATTCTGATCTTCAGAAACCTTTTGCTTGGGCATTTTCTCTGGCCTGGTCGTTGCAGCGGCAAAGAAAATTCTGGAGCTAGTGTTGACTTATGTGATCCACTTTAAGCTTAGGTCTAGTCCCACGCTTAGTTTTAGAATTCAGATAGGAAAATTTAAGTTTGGGGGTATAATTGCAAAAACTGATAATTCATTGGGGACAATGAATAATTCAAGTTTGGGGGACTTTTTGCTACTCCAATTGTTTTGCTCGAGCATTCCTCTCCTTCATTAAATAATTTGTTAGGTTATTGAGTAACCGGGGACACTTGTGATACCCACAGTTTGTCTTCGCGTCAAAAGGTGACCTAGGAAATGTGAAAAATTATGAAAAATTATTTGCTGAAAAAAGTGATTGTTGAAAATCTTGCTGAGAAAATTCATGGAGCAAAAGTTTTGAAGGATGAATGATAGTCCAGCAGTTTTTCTGTCTCCCAGAACTTAGGTGAGCTTCATCATAAAATGTTGCCATTCTGAGGGGCAAGAGATAGAATAACTAAGGATTTTTGAGTTTTACAAAGAGTATTTAGCCTAGTGGGTGATGAGTTTGAGGCAAGGGTATACTGCACCATAAAGTGGGTTATCCCATGCTTAAGAGCTTATGATTGTAAGGCTGCTTTAAGTTTGGAAAACAAAAATATAAACCCCTTGAAAATGTGTTTTGATATGTCTGATAATAGAGCTAAGCTGTGGCAAGTTCTTAGAATTGAGTTAAAAGTGGTGATTATTTGTCCATGCCGGAAGAATTATTTTGCTGCAGCAGTCCTTGGTTTTGCAGAATGCTCAGGTAAAGGTTGAAGGTAGTGTTGGATTATCTGTTTTGATTAAGCTGTGCTTTGTCTAATGTTTTGAATTCTTAAGGGGAGGTTGGTTAGTATTGCTCGGGACGCGCAATAGTTCAAGTTTGGGGGTGTGATAACTGCCCAAAAGGTAGTTATTTAGGCCTCATTTCTATATTGATTTGTGTGTCTTTTGTGCTTAATAGGGTTGGTTTAGATGTATATTACATGTTTTAACCCATTTGGAAGAATGGAAGCTTTGGAAATCATTTTGTGCAGAATCTGTTGCTGGGCGACTTGAGGGAGCAAATTTTGTGCTGCAACAAAACTAG

mRNA sequence

ATGCTTTGCAGAAGAGTAGGGGTTCCAGTGGATGAGGGAGATGTTATCCTGTTTGACAAGGGAATTATAGATACGCCTAACTTGGCGCGGCTTCAGCGTATGCAGGAGGCACGTCAAGGTGGGCTTATCTACGGCATCAACACGGTTTTAGAACAACTGGCACTTTCGGCCAGCAGGCAAGAGTTTGCCGAGAGGCAAGCTTTAACCTTCTGGAACTATGTTAGAAATCGTGATGCCAATCTGAAGAAGGCGCTGCAAGAAAATTTTTCCAAGCCGTATCCAGCCCTTCCAGCATTCCCTGAGGATCTTTTGAACCCTTGGATTCCACCCCCACCTGTTGAAAGAGAAGAGGAGGATGATGAAGAGCAGGAAACCTTTTGCTTGGGCATTTTCTCTGGCCTGGTCGTTGCAGCGGCAAAGAAAATTCTGGAGCTAGTGTTGACTTATGTGATCCACTTTAAGCTTAGGTCTAGTCCCACGCTTATGGGTGATGAGTTTGAGGCAAGGGTATACTGCACCATAAAGTGGGTTATCCCATGCTTAAGAGCTTATGATTGTAAGGCTGCTTTAAGTTTGGAAAACAAAAATATAAACCCCTTGAAAATGTGTTTTGATATGTCTGATAATAGAGCTAAGCTGTGGCAAGTTCTTAGAATTGAGTTAAAAGTGGTGATTATTTGTCCATGCCGGAAGAATTATTTTGCTGCAGCAGTCCTTGGTTTTGCAGAATGCTCAGAATCTGTTGCTGGGCGACTTGAGGGAGCAAATTTTGTGCTGCAACAAAACTAG

Coding sequence (CDS)

ATGCTTTGCAGAAGAGTAGGGGTTCCAGTGGATGAGGGAGATGTTATCCTGTTTGACAAGGGAATTATAGATACGCCTAACTTGGCGCGGCTTCAGCGTATGCAGGAGGCACGTCAAGGTGGGCTTATCTACGGCATCAACACGGTTTTAGAACAACTGGCACTTTCGGCCAGCAGGCAAGAGTTTGCCGAGAGGCAAGCTTTAACCTTCTGGAACTATGTTAGAAATCGTGATGCCAATCTGAAGAAGGCGCTGCAAGAAAATTTTTCCAAGCCGTATCCAGCCCTTCCAGCATTCCCTGAGGATCTTTTGAACCCTTGGATTCCACCCCCACCTGTTGAAAGAGAAGAGGAGGATGATGAAGAGCAGGAAACCTTTTGCTTGGGCATTTTCTCTGGCCTGGTCGTTGCAGCGGCAAAGAAAATTCTGGAGCTAGTGTTGACTTATGTGATCCACTTTAAGCTTAGGTCTAGTCCCACGCTTATGGGTGATGAGTTTGAGGCAAGGGTATACTGCACCATAAAGTGGGTTATCCCATGCTTAAGAGCTTATGATTGTAAGGCTGCTTTAAGTTTGGAAAACAAAAATATAAACCCCTTGAAAATGTGTTTTGATATGTCTGATAATAGAGCTAAGCTGTGGCAAGTTCTTAGAATTGAGTTAAAAGTGGTGATTATTTGTCCATGCCGGAAGAATTATTTTGCTGCAGCAGTCCTTGGTTTTGCAGAATGCTCAGAATCTGTTGCTGGGCGACTTGAGGGAGCAAATTTTGTGCTGCAACAAAACTAG

Protein sequence

MLCRRVGVPVDEGDVILFDKGIIDTPNLARLQRMQEARQGGLIYGINTVLEQLALSASRQEFAERQALTFWNYVRNRDANLKKALQENFSKPYPALPAFPEDLLNPWIPPPPVEREEEDDEEQETFCLGIFSGLVVAAAKKILELVLTYVIHFKLRSSPTLMGDEFEARVYCTIKWVIPCLRAYDCKAALSLENKNINPLKMCFDMSDNRAKLWQVLRIELKVVIICPCRKNYFAAAVLGFAECSESVAGRLEGANFVLQQN
Homology
[Close]
BLAST of Spg023795 vs. NCBI nr
Match: PON78020.1 (hypothetical protein PanWU01x14_023740 [Parasponia andersonii])

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-04
Identity = 35/97 (36.08%), Postives = 49/97 (50.52%), Query Frame = 0 

Query: 26  PNLARLQRMQEARQGGLIYGINTVLEQLALSASRQEFAERQALTFWNYVRNRDANLKKAL 85
           P+ +R      +R  G +      LEQ     S+QE   +Q   FW Y + RD  LKKAL
Sbjct: 210 PSSSRPAAASSSRTNGDVLQQLKALEQ---RLSQQEHTHKQQQQFWAYSKERDTALKKAL 269

Query: 86  QENFSKPYPALPAFPEDLLNPWIPPPPVEREEEDDEE 123
           Q NF++P P  PAFP+++L         E E E D++
Sbjct: 270 QNNFTRPIPTFPAFPQEILQDL----DYEYEAESDKD 299

[Close]
BLAST of Spg023795 vs. NCBI nr
Match: XP_016735604.1 (uncharacterized protein LOC107945685 [Gossypium hirsutum])

HSP 1 Score: 55.8 bits (133), Expect = 6.3e-04
Identity = 29/74 (39.19%), Postives = 45/74 (60.81%), Query Frame = 0 

Query: 51  EQLALSASRQEFAERQALTFWNYVRNRDANLKKALQENFSKPYPALPAFPEDLLNPWIPP 110
           +Q+ ++ +     E  +L FW YVR RDA +KK+LQ+NF++P P  P FP++LL+     
Sbjct: 78  QQVRIATNLNREQEEMSL-FWGYVRKRDAAIKKSLQKNFTRPLPMFPNFPKELLS----- 137

Query: 111 PPVEREEEDDEEQE 125
              E  EED+ E +
Sbjct: 138 -DAEEREEDEAEAD 144

[Close]
BLAST of Spg023795 vs. ExPASy TrEMBL
Match: A0A2P5DXM3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.2e-05
Identity = 35/97 (36.08%), Postives = 49/97 (50.52%), Query Frame = 0 

Query: 26  PNLARLQRMQEARQGGLIYGINTVLEQLALSASRQEFAERQALTFWNYVRNRDANLKKAL 85
           P+ +R      +R  G +      LEQ     S+QE   +Q   FW Y + RD  LKKAL
Sbjct: 210 PSSSRPAAASSSRTNGDVLQQLKALEQ---RLSQQEHTHKQQQQFWAYSKERDTALKKAL 269

Query: 86  QENFSKPYPALPAFPEDLLNPWIPPPPVEREEEDDEE 123
           Q NF++P P  PAFP+++L         E E E D++
Sbjct: 270 QNNFTRPIPTFPAFPQEILQDL----DYEYEAESDKD 299

[Close]
BLAST of Spg023795 vs. ExPASy TrEMBL
Match: A0A1U8NCN3 (uncharacterized protein LOC107945685 OS=Gossypium hirsutum OX=3635 GN=LOC107945685 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.1e-04
Identity = 29/74 (39.19%), Postives = 45/74 (60.81%), Query Frame = 0 

Query: 51  EQLALSASRQEFAERQALTFWNYVRNRDANLKKALQENFSKPYPALPAFPEDLLNPWIPP 110
           +Q+ ++ +     E  +L FW YVR RDA +KK+LQ+NF++P P  P FP++LL+     
Sbjct: 78  QQVRIATNLNREQEEMSL-FWGYVRKRDAAIKKSLQKNFTRPLPMFPNFPKELLS----- 137

Query: 111 PPVEREEEDDEEQE 125
              E  EED+ E +
Sbjct: 138 -DAEEREEDEAEAD 144

The following BLAST results are available for this feature:
BLAST of Spg023795 vs. NCBI nr
Match NameE-valueIdentityDescription
PON78020.11.3e-0436.08hypothetical protein PanWU01x14_023740 [Parasponia andersonii][more]
XP_016735604.16.3e-0439.19uncharacterized protein LOC107945685 [Gossypium hirsutum][more]
BLAST of Spg023795 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg023795 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5DXM36.2e-0536.08Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE... [more]
A0A1U8NCN33.1e-0439.19uncharacterized protein LOC107945685 OS=Gossypium hirsutum OX=3635 GN=LOC1079456... [more]
BLAST of Spg023795 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg023795.1Spg023795.1mRNA