Spg023670 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg023670
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	mitochondrial outer membrane protein porin 2-like
Location	scaffold13: 5168456 .. 5169775 (-)
RNA-Seq Expression	Spg023670
Synteny	Spg023670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTACTTTTTCTCTCCCTGATATCTCTCGTCTTCTCTCTTCCCCCTTCCCTCATCTCTTCACTTTCGTCTTCTCTCGTCTTCGCGAATTGGAAGCTTACAGACGGCGACGGAAAGCTCATCGACGGCGACTTGAAGCAGTACATCTCCGGCGCGGTTTCAATTCTCTCGTCTTCCAAACGCATGGGTTTTTTTGTTCGGCGCGGTGACTAGAAGCTTATCGACGGTGACTTGATCTCTTCCCCTCGCCGTCGGTCACTGAGCTCTTCATCTCCGGTACGAGGTGGGTTTTTTCTTTAATCTAAATCATTTGAGTAAAGTTTAGATCTCTTCCCCAAAATCTAAGCCCTAGATCTTGAATCTCTTTAGCTTTTACTTTCTTTTACTTGTTCTTTTGCTTTTTTGTTTCCCTTAATACTTTATGTCACCCATTTCCTCCCCTGAAATTTTGCAAGAGCTTTCTTCTCTGTGTTTCCATGGAAGTTTCCCATGGTGAGTACAACTTCCATGCACTTGCGCGAAAGAGAATTTAAGGTGTTCCTTGTTTTGGAATCTATTTTGCGTGAAAATTTGAGTTTGAGTTTCGAAGTTTAATTTGTTGAGTGTTGAAATAAAATTCTCTGGCTCGTTGAATGATGCTCATCATTTGTGTCTATTTTGATGTTAAGTGTGCCGATTAGATTAGATTTAGGGTTTTTTTTAAGAAAGATTTAGGGGTTAGCTTTGATATTCAATAGCCATTTTGAATGATTGCTAAGTTAATCTCGGAATCTGTTGTGAACATACCTGGTTGAAACCCCAAACTGAATTGAAAAGGCAAAAGTTTGAGGGTAAGAAAGATTTTTCGGTTCGTATGTGGCAGCACAGGGGAGGTCTTTACACAGGGGATGTGGCAGCACAGTACAAGCATAAGAATGCTATTCTTGATTTCAAATTGGACACAGAATCAAAACTGAGATTTATAAAAGCATATCTAATCAATAGTTTAATTTCAACTTCAAGTTATTAAATTGACCTTAGAGATTTTACCCCCTTTAATTGTTTAGCATATTAAATTGGATAAATATATACTCTATGGGATGAGTTGTTATAATTACATGCTTAAACTTTCAATTTGTGATCTATTACATCCCTAAACTTACAAAATTTTACATTTAAGCTTTCTATTACAGGGCCGATAAAGGAGACTCACTAAGAGTGGCATACTTGCACCTTTTCGAACAGCTGAATGGGGGAGCTGTTGTGGGAGAAATCAGCAGAACGTTTTCTACTAATGAGAATACACTGACACTGACAATCCAAGGGGCCCTATGCTTTACTTAA

mRNA sequence

TTACTTTTTCTCTCCCTGATATCTCTCGTCTTCTCTCTTCCCCCTTCCCTCATCTCTTCACTTTCGTCTTCTCTCGTCTTCGCGAATTGGAAGCTTACAGACGGCGACGGAAAGCTCATCGACGGCGACTTGAAGCAGTACATCTCCGGCGCGGTTTCAATTCTCTCGGCCGATAAAGGAGACTCACTAAGAGTGGCATACTTGCACCTTTTCGAACAGCTGAATGGGGGAGCTGTTGTGGGAGAAATCAGCAGAACGTTTTCTACTAATGAGAATACACTGACACTGACAATCCAAGGGGCCCTATGCTTTACTTAA

Coding sequence (CDS)

TTACTTTTTCTCTCCCTGATATCTCTCGTCTTCTCTCTTCCCCCTTCCCTCATCTCTTCACTTTCGTCTTCTCTCGTCTTCGCGAATTGGAAGCTTACAGACGGCGACGGAAAGCTCATCGACGGCGACTTGAAGCAGTACATCTCCGGCGCGGTTTCAATTCTCTCGGCCGATAAAGGAGACTCACTAAGAGTGGCATACTTGCACCTTTTCGAACAGCTGAATGGGGGAGCTGTTGTGGGAGAAATCAGCAGAACGTTTTCTACTAATGAGAATACACTGACACTGACAATCCAAGGGGCCCTATGCTTTACTTAA

Protein sequence

LLFLSLISLVFSLPPSLISSLSSSLVFANWKLTDGDGKLIDGDLKQYISGAVSILSADKGDSLRVAYLHLFEQLNGGAVVGEISRTFSTNENTLTLTIQGALCFT

Homology

[Close]

BLAST of Spg023670 vs. NCBI nr
Match: XP_008452645.1 (PREDICTED: mitochondrial outer membrane protein porin 2-like [Cucumis melo] >KAA0064444.1 mitochondrial outer membrane protein porin 2-like [Cucumis melo var. makuwa] >TYK20145.1 mitochondrial outer membrane protein porin 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 2.1e-11
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 53  SILSADKGDSLRVAYLHLFEQLNGGAVVGEISRTFSTNENTLTL 97
           S + ADKGDSLRVAYLHLFEQLNGGAVVGEISR FSTNENTLT+
Sbjct: 173 SAILADKGDSLRVAYLHLFEQLNGGAVVGEISRKFSTNENTLTV 216

[Close]

BLAST of Spg023670 vs. NCBI nr
Match: XP_038897124.1 (mitochondrial outer membrane protein porin 2-like [Benincasa hispida])

HSP 1 Score: 79.3 bits (194), Expect = 2.1e-11
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 53  SILSADKGDSLRVAYLHLFEQLNGGAVVGEISRTFSTNENTLTL 97
           S + ADKGDSLRVAYLHLFEQLNGGAVVGEISR FSTNENTLT+
Sbjct: 173 SAILADKGDSLRVAYLHLFEQLNGGAVVGEISRKFSTNENTLTV 216

[Close]

BLAST of Spg023670 vs. NCBI nr
Match: KAG6608425.1 (Mitochondrial outer membrane protein porin 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.4 bits (189), Expect = 8.1e-11
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 52  VSILSADKGDSLRVAYLHLFEQLNGGAVVGEISRTFSTNENTLTL 97
           VS + ADKGDS+RVAYLH FEQLNGGAVVGEISR FSTNENTLT+
Sbjct: 172 VSAILADKGDSVRVAYLHRFEQLNGGAVVGEISRKFSTNENTLTV 216

[Close]

BLAST of Spg023670 vs. NCBI nr
Match: XP_022941019.1 (mitochondrial outer membrane protein porin 2-like [Cucurbita moschata])

HSP 1 Score: 77.4 bits (189), Expect = 8.1e-11
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 52  VSILSADKGDSLRVAYLHLFEQLNGGAVVGEISRTFSTNENTLTL 97
           VS + ADKGDS+RVAYLH FEQLNGGAVVGEISR FSTNENTLT+
Sbjct: 172 VSAILADKGDSVRVAYLHRFEQLNGGAVVGEISRKFSTNENTLTV 216

[Close]

BLAST of Spg023670 vs. NCBI nr
Match: KAG7037762.1 (Mitochondrial outer membrane protein porin 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.4 bits (189), Expect = 8.1e-11
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 52  VSILSADKGDSLRVAYLHLFEQLNGGAVVGEISRTFSTNENTLTL 97
           VS + ADKGDS+RVAYLH FEQLNGGAVVGEISR FSTNENTLT+
Sbjct: 172 VSAILADKGDSVRVAYLHRFEQLNGGAVVGEISRKFSTNENTLTV 216

[Close]

BLAST of Spg023670 vs. ExPASy Swiss-Prot
Match: Q9FJX3 (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana OX=3702 GN=VDAC2 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-07
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 52  VSILSADKGDSLRVAYLHLFEQLNGGAVVGEISRTFSTNENTLTL 97
           +SI+  DKGDSL+ +YLH F++    A VGE+ R FSTNENT+T+
Sbjct: 171 LSIILGDKGDSLKASYLHHFDEFKRTAAVGEVYRKFSTNENTITV 215

[Close]

BLAST of Spg023670 vs. ExPASy Swiss-Prot
Match: Q0JJV1 (Mitochondrial outer membrane protein porin 4 OS=Oryza sativa subsp. japonica OX=39947 GN=VDAC4 PE=3 SV=3)

HSP 1 Score: 48.1 bits (113), Expect = 6.9e-05
Identity = 40/107 (37.38%), Postives = 55/107 (51.40%), Query Frame = 0


Query: 7   ISLVFSLPPSLISSLSSSLVFANWKLTDGDGKLID---GDLKQYISGAV---SILSAD-- 66
           ISL   L    + +LS   VF N  +  G    +D   GD  +Y +G     S L+AD  
Sbjct: 158 ISLGVGLTSKPLVNLSG--VFGNKSVAVGADVAVDTSTGDFTKYDAGLTINNSDLAADLT 217

Query: 67  ---KGDSLRVAYLHLFEQLNGGAVVGEISRTFSTNENTLTLTIQGAL 103
              KGDSL  +Y HL  + +G A   E++ +FST ENTL+  +Q AL
Sbjct: 218 LNNKGDSLTASYYHLVNKESGTAAGAELTHSFSTKENTLSFGMQHAL 262

[Close]

BLAST of Spg023670 vs. ExPASy Swiss-Prot
Match: Q9M2W6 (Putative mitochondrial outer membrane protein porin 5 OS=Arabidopsis thaliana OX=3702 GN=VDAC5 PE=5 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.0e-04
Identity = 20/45 (44.44%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 52  VSILSADKGDSLRVAYLHLFEQLNGGAVVGEISRTFSTNENTLTL 97
           VSI+  DKGDS++ +Y++  ++    A VGE+ R  STNE T+T+
Sbjct: 121 VSIILGDKGDSIKASYVYYLDESTRSATVGEVIRKISTNETTVTV 165

[Close]

BLAST of Spg023670 vs. ExPASy Swiss-Prot
Match: Q10S27 (Mitochondrial outer membrane protein porin 6 OS=Oryza sativa subsp. japonica OX=39947 GN=VDAC6 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.5e-04
Identity = 17/46 (36.96%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 51  AVSILSADKGDSLRVAYLHLFEQLNGGAVVGEISRTFSTNENTLTL 97
           + ++L ADKG++L+ +Y+H F + NG  V  E++    T EN  T+
Sbjct: 170 SAAVLLADKGETLKASYIHTFNETNGATVAAEVTHKLKTKENYFTI 215

[Close]

BLAST of Spg023670 vs. ExPASy TrEMBL
Match: A0A5D3D9A5 (Mitochondrial outer membrane protein porin 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002710 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.0e-11
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 53  SILSADKGDSLRVAYLHLFEQLNGGAVVGEISRTFSTNENTLTL 97
           S + ADKGDSLRVAYLHLFEQLNGGAVVGEISR FSTNENTLT+
Sbjct: 173 SAILADKGDSLRVAYLHLFEQLNGGAVVGEISRKFSTNENTLTV 216

[Close]

BLAST of Spg023670 vs. ExPASy TrEMBL
Match: A0A1S3BUA1 (mitochondrial outer membrane protein porin 2-like OS=Cucumis melo OX=3656 GN=LOC103493604 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.0e-11
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 53  SILSADKGDSLRVAYLHLFEQLNGGAVVGEISRTFSTNENTLTL 97
           S + ADKGDSLRVAYLHLFEQLNGGAVVGEISR FSTNENTLT+
Sbjct: 173 SAILADKGDSLRVAYLHLFEQLNGGAVVGEISRKFSTNENTLTV 216

[Close]

BLAST of Spg023670 vs. ExPASy TrEMBL
Match: A0A6J1FM01 (mitochondrial outer membrane protein porin 2-like OS=Cucurbita moschata OX=3662 GN=LOC111446434 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.9e-11
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 52  VSILSADKGDSLRVAYLHLFEQLNGGAVVGEISRTFSTNENTLTL 97
           VS + ADKGDS+RVAYLH FEQLNGGAVVGEISR FSTNENTLT+
Sbjct: 172 VSAILADKGDSVRVAYLHRFEQLNGGAVVGEISRKFSTNENTLTV 216

[Close]

BLAST of Spg023670 vs. ExPASy TrEMBL
Match: A0A0A0L3T5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642530 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.1e-11
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 53  SILSADKGDSLRVAYLHLFEQLNGGAVVGEISRTFSTNENTLTL 97
           S + ADKGDSLRVAYLHLFEQLNGGAVVGEISR FSTN NTLT+
Sbjct: 173 SAILADKGDSLRVAYLHLFEQLNGGAVVGEISRKFSTNANTLTV 216

[Close]

BLAST of Spg023670 vs. ExPASy TrEMBL
Match: A0A6J1IWL6 (mitochondrial outer membrane protein porin 2-like OS=Cucurbita maxima OX=3661 GN=LOC111481261 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 52  VSILSADKGDSLRVAYLHLFEQLNGGAVVGEISRTFSTNENTLTL 97
           VS + ADKGDS+RVAYLH F+QLNGGAVVGEISR FSTNENTLT+
Sbjct: 172 VSAILADKGDSVRVAYLHRFKQLNGGAVVGEISRKFSTNENTLTV 216

[Close]

BLAST of Spg023670 vs. TAIR 10
Match: AT5G67500.1 (voltage dependent anion channel 2 )

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-08
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 52  VSILSADKGDSLRVAYLHLFEQLNGGAVVGEISRTFSTNENTLTL 97
           +SI+  DKGDSL+ +YLH F++    A VGE+ R FSTNENT+T+
Sbjct: 171 LSIILGDKGDSLKASYLHHFDEFKRTAAVGEVYRKFSTNENTITV 215

[Close]

BLAST of Spg023670 vs. TAIR 10
Match: AT5G67500.2 (voltage dependent anion channel 2 )

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-08
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 52  VSILSADKGDSLRVAYLHLFEQLNGGAVVGEISRTFSTNENTLTL 97
           +SI+  DKGDSL+ +YLH F++    A VGE+ R FSTNENT+T+
Sbjct: 198 LSIILGDKGDSLKASYLHHFDEFKRTAAVGEVYRKFSTNENTITV 242

[Close]

BLAST of Spg023670 vs. TAIR 10
Match: AT3G49920.1 (voltage dependent anion channel 5 )

HSP 1 Score: 46.6 bits (109), Expect = 1.4e-05
Identity = 20/45 (44.44%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 52  VSILSADKGDSLRVAYLHLFEQLNGGAVVGEISRTFSTNENTLTL 97
           VSI+  DKGDS++ +Y++  ++    A VGE+ R  STNE T+T+
Sbjct: 121 VSIILGDKGDSIKASYVYYLDESTRSATVGEVIRKISTNETTVTV 165

The following BLAST results are available for this feature:

BLAST of Spg023670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452645.1	2.1e-11	88.64	PREDICTED: mitochondrial outer membrane protein porin 2-like [Cucumis melo] >KAA...	[more]
XP_038897124.1	2.1e-11	88.64	mitochondrial outer membrane protein porin 2-like [Benincasa hispida]	[more]
KAG6608425.1	8.1e-11	84.44	Mitochondrial outer membrane protein porin 2, partial [Cucurbita argyrosperma su...	[more]
XP_022941019.1	8.1e-11	84.44	mitochondrial outer membrane protein porin 2-like [Cucurbita moschata]	[more]
KAG7037762.1	8.1e-11	84.44	Mitochondrial outer membrane protein porin 2 [Cucurbita argyrosperma subsp. argy...	[more]

BLAST of Spg023670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJX3	2.5e-07	55.56	Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q0JJV1	6.9e-05	37.38	Mitochondrial outer membrane protein porin 4 OS=Oryza sativa subsp. japonica OX=...	[more]
Q9M2W6	2.0e-04	44.44	Putative mitochondrial outer membrane protein porin 5 OS=Arabidopsis thaliana OX...	[more]
Q10S27	4.5e-04	36.96	Mitochondrial outer membrane protein porin 6 OS=Oryza sativa subsp. japonica OX=...	[more]

BLAST of Spg023670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D9A5	1.0e-11	88.64	Mitochondrial outer membrane protein porin 2-like OS=Cucumis melo var. makuwa OX...	[more]
A0A1S3BUA1	1.0e-11	88.64	mitochondrial outer membrane protein porin 2-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1FM01	3.9e-11	84.44	mitochondrial outer membrane protein porin 2-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A0A0L3T5	5.1e-11	86.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642530 PE=3 SV=1	[more]
A0A6J1IWL6	1.1e-10	82.22	mitochondrial outer membrane protein porin 2-like OS=Cucurbita maxima OX=3661 GN...	[more]

BLAST of Spg023670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G67500.1	1.8e-08	55.56	voltage dependent anion channel 2	[more]
AT5G67500.2	1.8e-08	55.56	voltage dependent anion channel 2	[more]
AT3G49920.1	1.4e-05	44.44	voltage dependent anion channel 5	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11743:SF61	PORIN/VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN	coord: 50..97
IPR001925	Porin, eukaryotic type	PANTHER	PTHR11743	VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL	coord: 50..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg023670.1	Spg023670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098656	anion transmembrane transport
biological_process	GO:0015698	inorganic anion transport
cellular_component	GO:0005741	mitochondrial outer membrane
molecular_function	GO:0008308	voltage-gated anion channel activity