Spg023652 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg023652
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold13: 9296700 .. 9300836 (+)
RNA-Seq ExpressionSpg023652
SyntenySpg023652
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTCCCTGCTCGGATTTTGGCATCAACAATTACAATATTCGTTCTGAAGCCTCACAACATGGATCTTTTTCACAATGCAATGATTGCACTTTCTAGAGTTGGCGAGACAGCCAATTTGAAATGCTCCAAGGCAATGTTCTCAATAACAGCCCCACACATTTCTCCAAACTTCATTGTCTCGCTGCAAATAATGCCTCAATTCTTCTCCCACATTCTCCATCCTCGGACTTACCGTACAAGAATTTCCCTCCGCCGCTTCTTCCATATCATGATGGAAATGCATTCCAAAAATATTTCTTCAATCTCCATCGTTCTTGCAGAAATCTTCCCTGACGTATTCCTTCAATTCCACAATAAGATATTTGGTTGGATTAATTAATTAATATTAATTAAATAAATTAATTTAAGTTATTTATTTAATTAAAAATCAGTAACTCCCCACGTGGGGAGTTATGATGAGGTGGGGAGTTATCAGATAACCCCCCCTGCAATTAGTGAGATCTGGAAAAGCTCCAGAGCATCCTGCAGTTCATCCTCTCCCTCACACAACAGACTTCTATCAAGAAAAAATTCTCTCTTTTAAGATTTTCTCTCTACATGATTGCAAAGAAAATTCTCCTTCGTACATCTTCCCTAAATTCAAGAAGGAAGTCCCACATCTTCATTTTTTGAACCTAGAGGATAGTAGGGAAGGTTTTTTGGTTGTATTCCAAGAGATCCTGTTCTTGTACGTTGAAATCGTTCGTGCAGATGAGGCAAGCAGTTGTTGAATTTGGTCTTCAATGGTAAGTAATTTCTTCTTCCCCTTAGATTATATCTAAAATAAATGTTTAGCCTAGAAAGTATATGCAATCGTTACTGTATTTCACGTACTGTTTGCACGTATTTTAAATGAAATCGAAACACAAAAGTATTCGTACGCTTCGGCTGTGAGATTCAATTCCTTCAAAATCGCAGTCAAATTCTCAACAAAGTTAGAGACTAAACAGAGATATGATCGAAGCTTTCAAGCAGAGAGAGAGTTCTTACTAGTTACCAAGGAGATCTGAGAATTAGGTGAGTCACCTTCGATGGAATCTACTAGAGCTCGATTCTTGGAATCTCAACGCAGATGTGGCGTGGTTCGAAGACGCGAAGATTGGAGAAGTGGGGTGGTCCATCTGTGACTCGATAAGTTCTCTGATTGTGGCAGGATGCAAAAAATTCAGAGGAAGGGTGCAATCAAATTCTTAGAAGCTGAGGCCATTTGTTGATGGTATGAAAGAGTTGATCAAAACAAAGGAGACAGGTGGGGGGAGTTTCACTAAACCTTTGATAGTTGAATCGGACTCCATGGAAATCGTCAATCTGCTCAATCGCGAGTTGATAGCTCACATTATGAATTATTTTTCTCGATCCTTTATCGTTAGTCTTAGAGATTTATTTGGCCAAATTCATACTCTTTTATGTTTATTTTGTAGAAATCAAGTCTCGGGATGGATTAGAGCATTTGGAAGTTGATCGAGTGTTCGGGACAAAAAAGAGGCAACAGAATTGAAGCATTCAAAAAGAAGCTGAAGCAGCCATAAGTTAGACCCAAGAGCAGAGCGTTGAGACGCTCCCTTTTGGCATCGAGCGTCTCGATGATGCTGCAACACTTTCCTAGCCAACAATCCCGAAGGCACAGCGTCGAAACGTTATGTTGAGAGCGTCGAGACGCTTGACAATTTTCCATATTTAAATGAGGCGACAATCGGACAGCGTCGAGACGCTGTCGTGCTATTTTAATAAATACATTGTGATTAGCTATGGAGAAAGGGAGTTCAATTGGTGGGATTTTAGCCCTAGTTTCGATACAAAACACCTTGGGAGAGCTAGACGAAGCGGGGAGTGGGATTCGAGACGAGAGCTCGTGGAGATCGTGAATGGGAATGTGCGACATCTACGAGACTCGAGTTTTTACCTTTCTTTCCCTTATCTTTTGTTGGTTTTATGGCTTTTTATGCAAGCTTAAATTGTAATGTCAAGATTATGAGTAGCTAGGCTTGTATCTTAGGGATTGAGGTATCCTTTTGGTTTTATGGATTAACTTCTTGAATGATTTATTGCTTTTATTCTATTCATGCAATTATTTACTTAATGCTTTTAATCTACCGACCATAGATTGAATGTGGTTGCGTTGAATCTTGCTCAGGAGAGGGGATTTAGCTTAGATCTTAATTGTATGACTAAAGTAGTTCTAAGATTGGGAGGTTTAGGATTGCTTTAGAAGTTGTAAAAAAGGATTAGACGTAAGGCCTTGCATATCGTGTATCTAGATAGGAATATCGAATTCTTGATTATGCATGAGAATTAATTATGCTTGTATTAAGTGTCCTTGACTTATAGAAAATTGCATGTTAAACACATTCAAGTAATTAATCTGAAATTCCAATTGGTGGAATCTATTCCCCAAGTGTTTCTCTCATTTGATTCTTCAATTTATAGCTTTTGATATTTAATTCGTTATCACATCATGCTTTGATCTCTGAATAAAATTGAACAATAGTATTCACGGTAATTAATTGGCTAGAAACCCAATCTAGAGGACGACACTCGTATTTACGAAAACACTATATTAAAACTTTGGCCCGTACACTTGCAGTAGGGCATATTTGTGCACATCAAGTTTTTGGCGTCATTGCTGGGGATTGACAAGTATTTAGTTCAATTAATATCGTGAAGAATTTGTTTGGTCTTACTTTAGAGTGTATTTTATTGTATTTTTAGTTAGTGTTGATTTTATCTTTATTTGTGTCTTATTTATTTCTGTTTTTCTCTTTTATTTTTTTTAAAAAAATTTGGTTTGATTTTATTTTATTTTATTAGGATAGATATTGCATGCGAAAGGACAAAGAATTAGAGTTAACCCCTTTTGACCCTAAGATTGAGAAAACCTATTAGGAAGGAACAAAAGGAAAGGACTACATCCATGGCTAATCCTAATCCACCTGAGGAGCCTAGCCCATTCGAGACTACTTTCAGCTAGTCCTTCTGGAACAAAAGTTCGGGATAGTCTATCCACCAATAAATGCTAATAACTTTAAGCTGAAAACCGATCTCATTCAGATGGCTCGAAATAATGCTTTTAGAGGATCTCCCACAGAGGACCCTAACTCTCATCTCAAATCTTTTTTAGATATTTGTGGGACAACTGTGAAATTAAATGGTGTGACTGAGGATGCTATTCACTTACATCTCTATTCCCTTTTTTTTTTGCAGGATAAAGCGAGGGATTGACTACAATCAATTCCACCTGGGATGCTTTAGTTTAGACCTTTCTAAAGAAATTCTTTCCACCTGCAAAGACGGTCAAGTTTAGGACCGAAATTGGGACCTTCCAGCAACTGTTTGATGAGCAACTGTTCGAGGCTTGGGAATGATTCAAGGAATTATTGAGGAACTGTCCACAACATGGATACTCGGATTGGCTGTAGATTCAATTGTTTTATAATGGTTTAAATCTTAACACTAAAATTATTGTTGATGCAATTGTAGGTGGTACTCTATTGTTCAAGACCGTGGATAGTGCACGAACTTTACTGGAGGATATGGCCACAAATAGTTATCAATGGCCATCAGACTGTTCCACACCTAAAAAATAGCAGTTGGGGTCTATGAGATCAATAATGTTACTTCCTTGAAAGCTCAAATGTCTTCATTAGCTAACGCTTTTCTCAAATTTTCAGGTATATGGAGCTCACAATCTATAGAGTCAGTTGCAACAGCTCATGCATCTCAATCATAGGGAGAGGTAAGCGTTGAGCAGGTTCAGTACGTTGATAATAGGAATTCTAACTTTAGGGGACACCAAAATTCTTTACCCATACACTATCACACTGGGCTAGGGAATCATGAAAATTTTCTTATGCCAATACAAAGAATGTGTTAAACCCCCCTCCTAGATTCACTTCTCAACATCAGAAAAATAAACAATCTCTTGAGGATTTAGTGGGAGCTTTCATTGTTGAGTCTAGGTATAGAACAAGCAAGTTGGAGGATGAAGTAATTGCGCTAAATAGCACGGTGTATAGCCATGGTACGTAGGGGTGCAAGCAGCTCAGTTCGGCTAGGTTATTGTGCAAAACCGGAGCTGAACCGCTTATTTGGATAA

mRNA sequence

ATGAGTTTCCCTGCTCGGATTTTGGCATCAACAATTACAATATTCGTTCTGAAGCCTCACAACATGGATCTTTTTCACAATGCAATGATTGCACTTTCTAGAGTTGGCGAGACAGCCAATTTGAAATGCTCCAAGGCAATGTTCTCAATAACAGCCCCACACATTTCTCCAAACTTCATTGTCTCGCTGCAAATAATGCCTCAATTCTTCTCCCACATTCTCCATCCTCGGACTTACCGTACAAGAATTTCCCTCCGCCGCTTCTTCCATATCATGATGGAAATGCATTCCAAAAATATTTCTTCAATCTCCATCGTTCTTGCAGAAATCTTCCCTGACATGAGGCAAGCAGTTGTTGAATTTGGTCTTCAATGGTATATGGAGCTCACAATCTATAGAGTCAGTTGCAACAGCTCATGCATCTCAATCATAGGGAGAGCCATGGTACGTAGGGGTGCAAGCAGCTCAGTTCGGCTAGGTTATTGTGCAAAACCGGAGCTGAACCGCTTATTTGGATAA

Coding sequence (CDS)

ATGAGTTTCCCTGCTCGGATTTTGGCATCAACAATTACAATATTCGTTCTGAAGCCTCACAACATGGATCTTTTTCACAATGCAATGATTGCACTTTCTAGAGTTGGCGAGACAGCCAATTTGAAATGCTCCAAGGCAATGTTCTCAATAACAGCCCCACACATTTCTCCAAACTTCATTGTCTCGCTGCAAATAATGCCTCAATTCTTCTCCCACATTCTCCATCCTCGGACTTACCGTACAAGAATTTCCCTCCGCCGCTTCTTCCATATCATGATGGAAATGCATTCCAAAAATATTTCTTCAATCTCCATCGTTCTTGCAGAAATCTTCCCTGACATGAGGCAAGCAGTTGTTGAATTTGGTCTTCAATGGTATATGGAGCTCACAATCTATAGAGTCAGTTGCAACAGCTCATGCATCTCAATCATAGGGAGAGCCATGGTACGTAGGGGTGCAAGCAGCTCAGTTCGGCTAGGTTATTGTGCAAAACCGGAGCTGAACCGCTTATTTGGATAA

Protein sequence

MSFPARILASTITIFVLKPHNMDLFHNAMIALSRVGETANLKCSKAMFSITAPHISPNFIVSLQIMPQFFSHILHPRTYRTRISLRRFFHIMMEMHSKNISSISIVLAEIFPDMRQAVVEFGLQWYMELTIYRVSCNSSCISIIGRAMVRRGASSSVRLGYCAKPELNRLFG
Homology
[Close]
BLAST of Spg023652 vs. NCBI nr
Match: XP_031744101.1 (uncharacterized protein LOC116404781 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-07
Identity = 33/90 (36.67%), Postives = 57/90 (63.33%), Query Frame = 0 

Query: 21  NMDLFHNAMIALSRVGETANLKCSKAMFSITAPHISPNFIVSLQIMPQFFSHILHPRTYR 80
           N+D F +A+  LSR GE AN++CS +MFS+  PH +    V+ Q+MPQFF++    RT+ 
Sbjct: 8   NLDPFLDAIYILSRFGENANIECSPSMFSLIVPHHNLELNVAFQMMPQFFNYFFSNRTHS 67

Query: 81  TRISLRRFFHIMMEMHSKNISSISIVLAEI 111
           ++I ++  F+ +  M    I+S+S  + ++
Sbjct: 68  SKIPIQPLFNTIKRMKEYQITSLSFFVLKL 97

[Close]
BLAST of Spg023652 vs. NCBI nr
Match: KGN45635.1 (hypothetical protein Csa_005498 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-07
Identity = 33/90 (36.67%), Postives = 57/90 (63.33%), Query Frame = 0 

Query: 21  NMDLFHNAMIALSRVGETANLKCSKAMFSITAPHISPNFIVSLQIMPQFFSHILHPRTYR 80
           N+D F +A+  LSR GE AN++CS +MFS+  PH +    V+ Q+MPQFF++    RT+ 
Sbjct: 6   NLDPFLDAIYILSRFGENANIECSPSMFSLIVPHHNLELNVAFQMMPQFFNYFFSNRTHS 65

Query: 81  TRISLRRFFHIMMEMHSKNISSISIVLAEI 111
           ++I ++  F+ +  M    I+S+S  + ++
Sbjct: 66  SKIPIQPLFNTIKRMKEYQITSLSFFVLKL 95

[Close]
BLAST of Spg023652 vs. NCBI nr
Match: XP_008458677.1 (PREDICTED: uncharacterized protein LOC103498005 [Cucumis melo])

HSP 1 Score: 58.5 bits (140), Expect = 6.4e-05
Identity = 37/110 (33.64%), Postives = 62/110 (56.36%), Query Frame = 0 

Query: 17  LKPHNMDLFHNAMIALSRVGETANLKCSKAMFSITAPHISPNFIVSLQIMPQFFSHIL-H 76
           LK  N+  F  A++ L R  +TA+LKCS  MFS+      P  I SLQI+P FF++ L  
Sbjct: 3   LKLENIHSFSKALLPLQRFNDTADLKCSPKMFSLIISRHFPLIITSLQILPPFFTNFLCQ 62

Query: 77  PRTYRTRISLRRFFHIMMEMHSKNISSISIVLAEIFPDMRQAVVEFGLQW 126
            + ++ +I ++ F+ IM  M  +  SS+++ L       +Q +++  LQ+
Sbjct: 63  NQIFQFQIPIKSFYDIMNSMTHRLYSSMTLSL-----HPQQPLIQIALQF 107

[Close]
BLAST of Spg023652 vs. NCBI nr
Match: KAG7013722.1 (hypothetical protein SDJN02_23889, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.0 bits (136), Expect = 1.9e-04
Identity = 35/109 (32.11%), Postives = 62/109 (56.88%), Query Frame = 0 

Query: 14  IFVLKPHNMDLFHNAMIALSRVGETANLKCSKAMFSITAPHISPNFIVSLQIMPQFFSHI 73
           + +LK      F  A+  L+R  E AN++CS  +FSI A H + + +V++Q+MP+FF++ 
Sbjct: 1   MLMLKLDCPTFFLEAISLLTRFAENANVECSPDLFSIIASHHNLDLVVAIQMMPEFFTYF 60

Query: 74  LHPRTYRTRISLRRFFHIMMEMHSKNISSISI-VLAEIFPDMRQAVVEF 122
              +++ +RI L+  +  +  M   NI   ++ VL ++F   R  V EF
Sbjct: 61  FSHKSHLSRILLQPLYDTIKRMQQSNIPLAALFVLRQVF---RHMVAEF 106

[Close]
BLAST of Spg023652 vs. ExPASy TrEMBL
Match: A0A0A0K7E0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002300 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.1e-08
Identity = 33/90 (36.67%), Postives = 57/90 (63.33%), Query Frame = 0 

Query: 21  NMDLFHNAMIALSRVGETANLKCSKAMFSITAPHISPNFIVSLQIMPQFFSHILHPRTYR 80
           N+D F +A+  LSR GE AN++CS +MFS+  PH +    V+ Q+MPQFF++    RT+ 
Sbjct: 6   NLDPFLDAIYILSRFGENANIECSPSMFSLIVPHHNLELNVAFQMMPQFFNYFFSNRTHS 65

Query: 81  TRISLRRFFHIMMEMHSKNISSISIVLAEI 111
           ++I ++  F+ +  M    I+S+S  + ++
Sbjct: 66  SKIPIQPLFNTIKRMKEYQITSLSFFVLKL 95

[Close]
BLAST of Spg023652 vs. ExPASy TrEMBL
Match: A0A1S3C8E9 (uncharacterized protein LOC103498005 OS=Cucumis melo OX=3656 GN=LOC103498005 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.1e-05
Identity = 37/110 (33.64%), Postives = 62/110 (56.36%), Query Frame = 0 

Query: 17  LKPHNMDLFHNAMIALSRVGETANLKCSKAMFSITAPHISPNFIVSLQIMPQFFSHIL-H 76
           LK  N+  F  A++ L R  +TA+LKCS  MFS+      P  I SLQI+P FF++ L  
Sbjct: 3   LKLENIHSFSKALLPLQRFNDTADLKCSPKMFSLIISRHFPLIITSLQILPPFFTNFLCQ 62

Query: 77  PRTYRTRISLRRFFHIMMEMHSKNISSISIVLAEIFPDMRQAVVEFGLQW 126
            + ++ +I ++ F+ IM  M  +  SS+++ L       +Q +++  LQ+
Sbjct: 63  NQIFQFQIPIKSFYDIMNSMTHRLYSSMTLSL-----HPQQPLIQIALQF 107

[Close]
BLAST of Spg023652 vs. ExPASy TrEMBL
Match: A0A0A0K9W8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002330 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.8e-04
Identity = 28/77 (36.36%), Postives = 44/77 (57.14%), Query Frame = 0 

Query: 27  NAMIALSRVGETANLKCSKAMFSITAPHISPNFIVSLQIMPQFFSHILHPRTYRTRISLR 86
           N    LS +GE  +++ S    S+  P+ SP+FI  LQ+  +FF+  +  RTY+ R SLR
Sbjct: 16  NPTPVLSHLGEEVDIRVSPLKLSLMLPNFSPSFIAGLQMTHEFFNLYISDRTYQFRFSLR 75

Query: 87  RFFHIMMEMHSKNISSI 104
           +F+  M  M  +  SS+
Sbjct: 76  KFYTFMYRMELQGFSSM 92

[Close]
BLAST of Spg023652 vs. ExPASy TrEMBL
Match: A0A1S3C7Y9 (uncharacterized protein LOC103498009 OS=Cucumis melo OX=3656 GN=LOC103498009 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 7.6e-04
Identity = 32/101 (31.68%), Postives = 53/101 (52.48%), Query Frame = 0 

Query: 21  NMDLFHNAMIALSRVGETANLKCSKAMFSITAPHISPNFIVSLQIMPQFFSHILHPRTYR 80
           N+D   +A+  LSR  E   ++CS +M SI   H   +  VS Q+MPQFFSH    +T+ 
Sbjct: 8   NVDPLLDALYILSRCAENTIIQCSPSMVSIIVLHHELDLNVSFQMMPQFFSHFASNKTHS 67

Query: 81  TRISLRRFFHIMMEMHSKNISSISIVLAEIFPDMRQAVVEF 122
           ++  ++  ++ +  M    I+S S  L    P +   V++F
Sbjct: 68  SKTLIQPLYNTLKRMKESQITSFSFFL---LPPLDHLVLKF 105

The following BLAST results are available for this feature:
BLAST of Spg023652 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031744101.11.1e-0736.67uncharacterized protein LOC116404781 [Cucumis sativus][more]
KGN45635.11.1e-0736.67hypothetical protein Csa_005498 [Cucumis sativus][more]
XP_008458677.16.4e-0533.64PREDICTED: uncharacterized protein LOC103498005 [Cucumis melo][more]
KAG7013722.11.9e-0432.11hypothetical protein SDJN02_23889, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Spg023652 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg023652 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7E05.1e-0836.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002300 PE=4 SV=1[more]
A0A1S3C8E93.1e-0533.64uncharacterized protein LOC103498005 OS=Cucumis melo OX=3656 GN=LOC103498005 PE=... [more]
A0A0A0K9W85.8e-0436.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002330 PE=4 SV=1[more]
A0A1S3C7Y97.6e-0431.68uncharacterized protein LOC103498009 OS=Cucumis melo OX=3656 GN=LOC103498009 PE=... [more]
BLAST of Spg023652 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.70.10.10coord: 10..121
e-value: 3.6E-6
score: 28.4
NoneNo IPR availableSUPERFAMILY55979DNA clampcoord: 17..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg023652.1Spg023652.1mRNA