Spg023483 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg023483
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribosomal protein L34
Location	scaffold13: 1225723 .. 1228796 (+)
RNA-Seq Expression	Spg023483
Synteny	Spg023483

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCATCTCTAGGGTTTAGTGAGCTCGTTCCTTTGATAATGGCGTCCAAACTTCTGATTCGGACGGGAAATTCTTTGATCAATCGGTTGCGATCGAATTCCACACATCAGAATAACAGGATTTTCAATCCCCAAACTCTGTCCCATGGCCATGGCGTTGAAGTCACTCCGATGCTATTTCCTTCAGTCTCTAAGCACCAGACCGGGCACCATTTGCAGCAGAACGACAACGAATCATTGAGGAAGCTCGAATCCGAAGGCATTTTCTTCCCTTTTGGTCTTCCGTCGCTTCGGTTCTTCTTGCCCGATGGTATGCTGTTTCTTTCCTGCTCTGCTTGAGCTGATCTTTAGAGTTAATTCAGTGGGTATGCGGTTTCTGTTGCGTTCTAATTGTTCTTATGAGTCTAAAGGTAGCTTAATCTAATTAGAAATGTGAGGACGATATATGCAGAAGGTTCATTTAGTGTGCAAATTGCTTTGCTATATGATAGTGGCTTGGATTTAAGTTCTTATAGGAGATAATGGAGCATGGATGATAAATTTAATGTTTTTTTCTTTTAACATTTTTGTATGCACCCATTGATGATTGAATATGAAATTCTGTCATGTTCTGTTCTACTATGCTACGTTTGACCTTTTACGGCAAAACTACTCCTATATAAGATACTTAAAGGCAGGTTTGCTTGTATGAACTACGGGAAAGGGCCTTTGAGTGCCATGGTGACGCCTAGATTTCAAATTAGGAACGGCTGTTGCACCAATATTATTATAAAGTTATAATAAGTTCATACAAATATTGAATTTAATTGTTCAAGGGGTGCCCCAAGGGCTTGAAGTATGATAACGCAAGAATGTGAAGAAATAGGCAGAGATAGCAAATAACAATCATATATAGTAGATCCCTGCAGGATGGTATTTGGTGGATGATCTGATCCTATCACATTATTCCCTTTTCATGAATACTAGGCAAGTTTTTTTTTTGTTTCTTCCCTTCGTTTAATTCTGTATTTAGATGTACCCTATTTTCACAAGTTCACATCTTATATTGTTTGCGGAGTCATTCATTATCAGACAGCATTTGCAGATGGTATATTGACCAAGTTAAGTCTCGGGATAAAAGTTTTGAAAGAAAGGTCTATGGGGATAGATCCCAGATACTTGAAATACAGAAATAATGCTATGGTAGCATCAAGGGTCTATGTTCTAGACATATATTTGTCTGGTTGTGAGGTGTGAAGAGGGGATGCTGGCTCCGTCAATCATTAAGCAACCAAAAAAACATTGCTTTTTTATACTGCATCTTGTTGTGGTAGTTTCTAATTTTAATTAACTTATATAATCATAAGTTTGGAGTCTAAGTGAGAGTGGGATTATCAGGTGTTTCTTAACACCAAAAGGTTTTGCCTCTCTTAAGGCCAAGATAAAATTTAGGGTGCTAAAAATATCGGCAAATCACTCGAGCTTTAGGGATGACTTCTCAATTAGCCTCGAGAACCCTGTTGGTGGTGAAGATAAGCCTACCGGCATCTACCCATCACTGTGGTAATGCATAGGGGTGTCTATACTCATTCTGTAAGGAACTGACTTTCGTTCTGCAAAATATCATGTGAACCATGCTTGTGTGTTGAAAATGTGATATTGTAGCTGGATTTGCCATATTTCTGGTTTTTTCCTTCTTTCCTCTTTGGGTTTTGCATGGGAGGGATTAACACCATCCTTTCTATCTAGAGGGATTCCTCTGTGTTGGTGGGCTCTAAAGGGTGTGTTCTGTGCAAATATGCTTTAGAAAGTTTGGACCATGTACTTTGGAGACATAACTTTGCCGCCTTGATTTGGAGCTCTTTTTTGGAGAACTTCAGTGTTTCCTCAGCTGAAATAGCTATTGTCATTCGATGGTTGAAGAGGTGTTGATTCCATCTTATGTACAGAACAGAGTGAGACTTCGTGGAACACCTTTCTTGCTATTTTGTGGAATATCTTACCTGAGAGAAATTGGAGGATCTCCACACCTTGACAACAAGGTGTGTTTTGTGGCGGAGTAATGATAGGATTAGGGAGTAGGGGTAATATGGTAATTAGGAGGGTGGTTTGTTGGGTGTTTCTTAGGGGGATCCGGCAACGAGAGGCAATGTTGTGATTGTTTAAGTTTGAGTTAAGAGGGGAGGTCTTAGGTGTCAAAGATCTCATTTTCGGCCTTATTGAAAGAAATCTCTCTTTAGCATTCTCAATCGTGTTGACTGCAAGTTGAGCATCATCCTGAATGTAGAAAAACTCGTTTTAAGTAGTTAATAAATATTTTGACCTTCCTGTGGCTGGCTTCCGAGTTATGGTACATGGATTCCCTTCATTAAATAAAGCTTTGTACATAACAATTTGATGCGCTCAGATCATAACTTAACTTGTCACTGCTTCTTGTATTATTACTTTTGTAAAATTAAGGCACTAAGTTTTTTCCTTTCCGCAGGAGACGCTTCTTCGACTCAAGAACCAATGCTCTTATTTCCTAAAAGGACTTTTCAACCTAGCACCATCAGGCGGAAGAGGAATCATGGATTTTTTGCCCGGTATCTTCCCATTGTCTTTTCTTCACGTTTCTGCATATATATCTTTTATCTGTAATGTTTTCACAAACGAGAATTTATGATCTGCGAATAATGTTATAGTTTGCTTAAACATGCCCGGTACCGCCTTAAGAAGGGAAAGGTAGTCTGTATTGTCATATCAAAATGTAACAAATCATTTCGAAATGTGCATTAAAAAACCACTTTTTCTTCTTTGAGCAGCAAAGCAACCAAGGGTGGGCGGAAAGTTATTGCTCGAAGGATTGCAAAGGGCCGATCAAGAATAACCGCATGATGTTTATCTCAAGTCAGGTCTATTTGAATTGCCCTGCCAATATCTTTTGTAGGTTGTGTTAGTTTGTTTTATTAACTGGAAAGAACATACTCGCTGGCTGAATAATCCCCATTATTGTTGATTGTCGTCTTAGTCTTCGGATACAGTCTGTATAAACAATCTTCTCTGTTTCTAAAATTACCATGCATTAAACCAGTTTCTAGTTCCATATTGAAGTTTC

mRNA sequence

ATGGCGTCCAAACTTCTGATTCGGACGGGAAATTCTTTGATCAATCGGTTGCGATCGAATTCCACACATCAGAATAACAGGATTTTCAATCCCCAAACTCTGTCCCATGGCCATGGCGTTGAAGTCACTCCGATGCTATTTCCTTCAGTCTCTAAGCACCAGACCGGGCACCATTTGCAGCAGAACGACAACGAATCATTGAGGAAGCTCGAATCCGAAGGCATTTTCTTCCCTTTTGGTCTTCCGTCGCTTCGGTTCTTCTTGCCCGATGTCATTCATTATCAGACAGCATTTGCAGATGGTATATTGACCAAGTTAAGTCTCGGGATAAAAGTTTTGAAAGAAAGGTCTATGGGGATAGATCCCAGATACTTGAAATACAGAAATAATGCTATGGTAGCATCAAGGGTCTATGTTCTAGACATATATTTGTCTGGTTGTGAGAACAGAGTGAGACTTCGTGGAACACCTTTCTTGCTATTTTGTGGAATATCTTACCTGAGAGAAATTGGAGGATCTCCACACCTTGACAACAAGGAGACGCTTCTTCGACTCAAGAACCAATGCTCTTATTTCCTAAAAGGACTTTTCAACCTAGCACCATCAGGCGGAAGAGGAATCATGGATTTTTTGCCCGTTTGCTTAAACATGCCCGGTACCGCCTTAAGAAGGGAAAGCAAAGCAACCAAGGGTGGGCGGAAAGTTATTGCTCGAAGGATTGCAAAGGGCCGATCAAGAATAACCGCATGA

Coding sequence (CDS)

ATGGCGTCCAAACTTCTGATTCGGACGGGAAATTCTTTGATCAATCGGTTGCGATCGAATTCCACACATCAGAATAACAGGATTTTCAATCCCCAAACTCTGTCCCATGGCCATGGCGTTGAAGTCACTCCGATGCTATTTCCTTCAGTCTCTAAGCACCAGACCGGGCACCATTTGCAGCAGAACGACAACGAATCATTGAGGAAGCTCGAATCCGAAGGCATTTTCTTCCCTTTTGGTCTTCCGTCGCTTCGGTTCTTCTTGCCCGATGTCATTCATTATCAGACAGCATTTGCAGATGGTATATTGACCAAGTTAAGTCTCGGGATAAAAGTTTTGAAAGAAAGGTCTATGGGGATAGATCCCAGATACTTGAAATACAGAAATAATGCTATGGTAGCATCAAGGGTCTATGTTCTAGACATATATTTGTCTGGTTGTGAGAACAGAGTGAGACTTCGTGGAACACCTTTCTTGCTATTTTGTGGAATATCTTACCTGAGAGAAATTGGAGGATCTCCACACCTTGACAACAAGGAGACGCTTCTTCGACTCAAGAACCAATGCTCTTATTTCCTAAAAGGACTTTTCAACCTAGCACCATCAGGCGGAAGAGGAATCATGGATTTTTTGCCCGTTTGCTTAAACATGCCCGGTACCGCCTTAAGAAGGGAAAGCAAAGCAACCAAGGGTGGGCGGAAAGTTATTGCTCGAAGGATTGCAAAGGGCCGATCAAGAATAACCGCATGA

Protein sequence

MASKLLIRTGNSLINRLRSNSTHQNNRIFNPQTLSHGHGVEVTPMLFPSVSKHQTGHHLQQNDNESLRKLESEGIFFPFGLPSLRFFLPDVIHYQTAFADGILTKLSLGIKVLKERSMGIDPRYLKYRNNAMVASRVYVLDIYLSGCENRVRLRGTPFLLFCGISYLREIGGSPHLDNKETLLRLKNQCSYFLKGLFNLAPSGGRGIMDFLPVCLNMPGTALRRESKATKGGRKVIARRIAKGRSRITA

Homology

[Close]

BLAST of Spg023483 vs. NCBI nr
Match: XP_022955351.1 (uncharacterized protein LOC111457406 isoform X1 [Cucurbita moschata])

HSP 1 Score: 161.0 bits (406), Expect = 1.3e-35
Identity = 87/137 (63.50%), Postives = 102/137 (74.45%), Query Frame = 0


Query: 1   MASKLLIRTGNSLINRLRSNSTHQNNRIFNPQTLSHGHGVEVTPMLFPSVSKHQTGHHLQ 60
           MASKLLIRTGNSL+NRLR +STHQNN I++ Q+LS GHGV+VTPMLFPSVSKHQT HHLQ
Sbjct: 1   MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQ 60

Query: 61  QNDNESLRKLESEGIFFPFGLPSLRFFLPDVIHYQTAFADGILTKLSLGIKVL-KERSMG 120
           QND ESLRKLESEGIFFPFGLPSLRFFLPD     T     +  K +     + ++R+ G
Sbjct: 61  QNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPMLLFPKRTFQPSTIRRKRNHG 120

Query: 121 IDPRYLKYRNNAMVASR 137
              RYL     A ++S+
Sbjct: 121 FFARYLSLSFPACLSSK 137

[Close]

BLAST of Spg023483 vs. NCBI nr
Match: KAG6581832.1 (hypothetical protein SDJN03_21834, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 158.7 bits (400), Expect = 6.6e-35
Identity = 78/90 (86.67%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MASKLLIRTGNSLINRLRSNSTHQNNRIFNPQTLSHGHGVEVTPMLFPSVSKHQTGHHLQ 60
          MASKLLIRTGNSL+NRLR +STHQNN I++ Q+LS GHGV+VTPMLFPSVSKHQT HHLQ
Sbjct: 1  MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQ 60

Query: 61 QNDNESLRKLESEGIFFPFGLPSLRFFLPD 91
          QND ESLRKLESEGIFFPFGLPSLRFFLPD
Sbjct: 61 QNDTESLRKLESEGIFFPFGLPSLRFFLPD 90

[Close]

BLAST of Spg023483 vs. NCBI nr
Match: KAG7018271.1 (hypothetical protein SDJN02_20139, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158.7 bits (400), Expect = 6.6e-35
Identity = 78/90 (86.67%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MASKLLIRTGNSLINRLRSNSTHQNNRIFNPQTLSHGHGVEVTPMLFPSVSKHQTGHHLQ 60
          MASKLLIRTGNSL+NRLR +STHQNN I++ Q+LS GHGV+VTPMLFPSVSKHQT HHLQ
Sbjct: 1  MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQ 60

Query: 61 QNDNESLRKLESEGIFFPFGLPSLRFFLPD 91
          QND ESLRKLESEGIFFPFGLPSLRFFLPD
Sbjct: 61 QNDTESLRKLESEGIFFPFGLPSLRFFLPD 90

[Close]

BLAST of Spg023483 vs. NCBI nr
Match: XP_023526191.1 (uncharacterized protein LOC111789743 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158.7 bits (400), Expect = 6.6e-35
Identity = 86/137 (62.77%), Postives = 101/137 (73.72%), Query Frame = 0


Query: 1   MASKLLIRTGNSLINRLRSNSTHQNNRIFNPQTLSHGHGVEVTPMLFPSVSKHQTGHHLQ 60
           MASKLLIRTGNSL+NRLR +STHQNN I++ Q+LS GHGV+VTPMLFPSVSKHQ  HHLQ
Sbjct: 1   MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQPAHHLQ 60

Query: 61  QNDNESLRKLESEGIFFPFGLPSLRFFLPDVIHYQTAFADGILTKLSLGIKVL-KERSMG 120
           QND ESLRKLESEGIFFPFGLPSLRFFLPD     T     +  K +     + ++R+ G
Sbjct: 61  QNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPMLLFPKRTFQPSTIRRKRNHG 120

Query: 121 IDPRYLKYRNNAMVASR 137
              RYL     A ++S+
Sbjct: 121 FFARYLSLSFPACLSSK 137

[Close]

BLAST of Spg023483 vs. NCBI nr
Match: XP_022152693.1 (uncharacterized protein LOC111020350 [Momordica charantia])

HSP 1 Score: 158.7 bits (400), Expect = 6.6e-35
Identity = 108/249 (43.37%), Postives = 123/249 (49.40%), Query Frame = 0


Query: 1   MASKLLIRTGNSLINRLRSNSTHQNNRIFNPQTLSHGHGVEVTPMLFPSVSKHQTGHHLQ 60
           MASKLLIR GNS INRLR NST Q++RI++ QTLSHGHGVEVTPMLFPSVSKHQT HHLQ
Sbjct: 1   MASKLLIRIGNSFINRLRLNSTQQSHRIWSHQTLSHGHGVEVTPMLFPSVSKHQTSHHLQ 60

Query: 61  QNDNESLRKLESEGIFFPFGLPSLRFFLPDVIHYQTAFADGILTKLSLGIKVLKERSMGI 120
           QND ESLRKLESEG+FFPFGLPSLRFFLPD         D   ++               
Sbjct: 61  QNDIESLRKLESEGVFFPFGLPSLRFFLPD--------GDASSSQ--------------- 120

Query: 121 DPRYLKYRNNAMVASRVYVLDIYLSGCENRVRLRGTPFLLFCGISYLREIGGSPHLDNKE 180
                                               P LLF            P    + 
Sbjct: 121 -----------------------------------EPMLLF------------PKRTFQP 147

Query: 181 TLLRLKNQCSYFLKGLFNLAPSGGRGIMDFLPVCLNMPGTALRRESKATKGGRKVIARRI 240
           +++R K    +F +                                KATKGGRKVI+RRI
Sbjct: 181 SIIRRKRNHGFFAR--------------------------------KATKGGRKVISRRI 147

Query: 241 AKGRSRITA 250
           AKGRSR+TA
Sbjct: 241 AKGRSRVTA 147

[Close]

BLAST of Spg023483 vs. ExPASy TrEMBL
Match: A0A6J1GTJ1 (uncharacterized protein LOC111457406 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457406 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 6.4e-36
Identity = 87/137 (63.50%), Postives = 102/137 (74.45%), Query Frame = 0


Query: 1   MASKLLIRTGNSLINRLRSNSTHQNNRIFNPQTLSHGHGVEVTPMLFPSVSKHQTGHHLQ 60
           MASKLLIRTGNSL+NRLR +STHQNN I++ Q+LS GHGV+VTPMLFPSVSKHQT HHLQ
Sbjct: 1   MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQ 60

Query: 61  QNDNESLRKLESEGIFFPFGLPSLRFFLPDVIHYQTAFADGILTKLSLGIKVL-KERSMG 120
           QND ESLRKLESEGIFFPFGLPSLRFFLPD     T     +  K +     + ++R+ G
Sbjct: 61  QNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPMLLFPKRTFQPSTIRRKRNHG 120

Query: 121 IDPRYLKYRNNAMVASR 137
              RYL     A ++S+
Sbjct: 121 FFARYLSLSFPACLSSK 137

[Close]

BLAST of Spg023483 vs. ExPASy TrEMBL
Match: A0A6J1GTQ0 (uncharacterized protein LOC111457406 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457406 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 3.2e-35
Identity = 78/90 (86.67%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MASKLLIRTGNSLINRLRSNSTHQNNRIFNPQTLSHGHGVEVTPMLFPSVSKHQTGHHLQ 60
          MASKLLIRTGNSL+NRLR +STHQNN I++ Q+LS GHGV+VTPMLFPSVSKHQT HHLQ
Sbjct: 1  MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQ 60

Query: 61 QNDNESLRKLESEGIFFPFGLPSLRFFLPD 91
          QND ESLRKLESEGIFFPFGLPSLRFFLPD
Sbjct: 61 QNDTESLRKLESEGIFFPFGLPSLRFFLPD 90

[Close]

BLAST of Spg023483 vs. ExPASy TrEMBL
Match: A0A6J1DFJ1 (uncharacterized protein LOC111020350 OS=Momordica charantia OX=3673 GN=LOC111020350 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 3.2e-35
Identity = 108/249 (43.37%), Postives = 123/249 (49.40%), Query Frame = 0


Query: 1   MASKLLIRTGNSLINRLRSNSTHQNNRIFNPQTLSHGHGVEVTPMLFPSVSKHQTGHHLQ 60
           MASKLLIR GNS INRLR NST Q++RI++ QTLSHGHGVEVTPMLFPSVSKHQT HHLQ
Sbjct: 1   MASKLLIRIGNSFINRLRLNSTQQSHRIWSHQTLSHGHGVEVTPMLFPSVSKHQTSHHLQ 60

Query: 61  QNDNESLRKLESEGIFFPFGLPSLRFFLPDVIHYQTAFADGILTKLSLGIKVLKERSMGI 120
           QND ESLRKLESEG+FFPFGLPSLRFFLPD         D   ++               
Sbjct: 61  QNDIESLRKLESEGVFFPFGLPSLRFFLPD--------GDASSSQ--------------- 120

Query: 121 DPRYLKYRNNAMVASRVYVLDIYLSGCENRVRLRGTPFLLFCGISYLREIGGSPHLDNKE 180
                                               P LLF            P    + 
Sbjct: 121 -----------------------------------EPMLLF------------PKRTFQP 147

Query: 181 TLLRLKNQCSYFLKGLFNLAPSGGRGIMDFLPVCLNMPGTALRRESKATKGGRKVIARRI 240
           +++R K    +F +                                KATKGGRKVI+RRI
Sbjct: 181 SIIRRKRNHGFFAR--------------------------------KATKGGRKVISRRI 147

Query: 241 AKGRSRITA 250
           AKGRSR+TA
Sbjct: 241 AKGRSRVTA 147

[Close]

BLAST of Spg023483 vs. ExPASy TrEMBL
Match: A0A6J1KF33 (uncharacterized protein LOC111492674 OS=Cucurbita maxima OX=3661 GN=LOC111492674 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 7.1e-35
Identity = 76/90 (84.44%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MASKLLIRTGNSLINRLRSNSTHQNNRIFNPQTLSHGHGVEVTPMLFPSVSKHQTGHHLQ 60
          MAS LL+RTGNSLINRLR NSTHQ +RI+ PQTLSHGHG EVTPMLFPS+SKHQT  HLQ
Sbjct: 1  MASTLLVRTGNSLINRLRLNSTHQTSRIWYPQTLSHGHGAEVTPMLFPSLSKHQTAQHLQ 60

Query: 61 QNDNESLRKLESEGIFFPFGLPSLRFFLPD 91
          QND E++RKLESEGIFFPFGLPSLRFFLPD
Sbjct: 61 QNDTETVRKLESEGIFFPFGLPSLRFFLPD 90

[Close]

BLAST of Spg023483 vs. ExPASy TrEMBL
Match: A0A6J1IS44 (uncharacterized protein LOC111480019 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480019 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.2e-34
Identity = 86/137 (62.77%), Postives = 101/137 (73.72%), Query Frame = 0


Query: 1   MASKLLIRTGNSLINRLRSNSTHQNNRIFNPQTLSHGHGVEVTPMLFPSVSKHQTGHHLQ 60
           MASKLLIRTGNSL+NRLR +ST QNN I++ Q+LS GHGV+VTPMLFPSVSKHQT HHLQ
Sbjct: 1   MASKLLIRTGNSLMNRLRLSSTLQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQ 60

Query: 61  QNDNESLRKLESEGIFFPFGLPSLRFFLPDVIHYQTAFADGILTKLSLGIKVL-KERSMG 120
           QND ESLRKLESEGIFFPFGLPSLRFFLPD     T     +  K +     + ++R+ G
Sbjct: 61  QNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPMLLFPKRTFQPSTIRRKRNHG 120

Query: 121 IDPRYLKYRNNAMVASR 137
              RYL     A ++S+
Sbjct: 121 FFARYLSLSFPACLSSK 137

[Close]

BLAST of Spg023483 vs. TAIR 10
Match: AT3G13882.2 (Ribosomal protein L34 )

HSP 1 Score: 78.6 bits (192), Expect = 8.1e-15
Identity = 65/212 (30.66%), Postives = 92/212 (43.40%), Query Frame = 0


Query: 39  GVEVTPMLFPSVSKHQTGHHLQQNDNESLRKLESEGIFFPFGLPSLRFFLPDVIHYQTAF 98
           G E+ P  FPS+S  Q+    + ND  SL++L   G  +P GLPSL FFLP+V   Q+  
Sbjct: 48  GQEIPPYFFPSLSNLQSSLISRPNDTASLQELNERGFLYPSGLPSLEFFLPEVYAMQSLD 107

Query: 99  A-DGILTKLSLGIKVLKERSMGIDPRYLKYRNNAMVASRVYVLDIYLSGCENRVRLRGTP 158
           A +      SL +++L    + I             A+R Y+ ++++ G  N V     P
Sbjct: 108 ARESSALYCSLALRLLVSAKLYI------------FAARWYLSNVFVFG--NVVDPSSEP 167

Query: 159 FLLFCGISYLREIGGSPHLDNKETLLRLKNQCSYFLKGLFNLAPSGGRGIMDFLPVCLNM 218
            LLF            P    + + +R K    +F +                       
Sbjct: 168 LLLF------------PKRTFQPSTIRRKRNHGFFAR----------------------- 201

Query: 219 PGTALRRESKATKGGRKVIARRIAKGRSRITA 250
                    KATKGGR+VIARRIAKGR R+TA
Sbjct: 228 ---------KATKGGRRVIARRIAKGRHRVTA 201

[Close]

BLAST of Spg023483 vs. TAIR 10
Match: AT3G13882.1 (Ribosomal protein L34 )

HSP 1 Score: 65.9 bits (159), Expect = 5.4e-11
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 1  MASKLLIRTGNSLINRLRSNSTH---QNNRIFNPQTLSHGHGVEVTPMLFPSVSKHQTGH 60
          MA+K LIR+G SL+NR  +  T    QNN   + Q ++   G E+ P  FPS+S  Q+  
Sbjct: 1  MAAKTLIRSGASLMNRFLTKPTTNIVQNNLRSSFQYIA-PQGQEIPPYFFPSLSNLQSSL 60

Query: 61 HLQQNDNESLRKLESEGIFFPFGLPSLRFFLPDV 92
            + ND  SL++L   G  +P GLPSL FFLP+V
Sbjct: 61 ISRPNDTASLQELNERGFLYPSGLPSLEFFLPEV 93

HSP 2 Score: 40.4 bits (93), Expect = 2.4e-03
Identity = 20/23 (86.96%), Postives = 22/23 (95.65%), Query Frame = 0


Query: 227 KATKGGRKVIARRIAKGRSRITA 250
           KATKGGR+VIARRIAKGR R+TA
Sbjct: 125 KATKGGRRVIARRIAKGRHRVTA 147

The following BLAST results are available for this feature:

BLAST of Spg023483 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955351.1	1.3e-35	63.50	uncharacterized protein LOC111457406 isoform X1 [Cucurbita moschata]	[more]
KAG6581832.1	6.6e-35	86.67	hypothetical protein SDJN03_21834, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7018271.1	6.6e-35	86.67	hypothetical protein SDJN02_20139, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023526191.1	6.6e-35	62.77	uncharacterized protein LOC111789743 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022152693.1	6.6e-35	43.37	uncharacterized protein LOC111020350 [Momordica charantia]	[more]

BLAST of Spg023483 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg023483 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GTJ1	6.4e-36	63.50	uncharacterized protein LOC111457406 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1GTQ0	3.2e-35	86.67	uncharacterized protein LOC111457406 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1DFJ1	3.2e-35	43.37	uncharacterized protein LOC111020350 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1KF33	7.1e-35	84.44	uncharacterized protein LOC111492674 OS=Cucurbita maxima OX=3661 GN=LOC111492674...	[more]
A0A6J1IS44	1.2e-34	62.77	uncharacterized protein LOC111480019 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Spg023483 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13882.2	8.1e-15	30.66	Ribosomal protein L34	[more]
AT3G13882.1	5.4e-11	43.62	Ribosomal protein L34	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.287.3980		coord: 224..249 e-value: 1.8E-5 score: 26.4
None	No IPR available	PANTHER	PTHR14503:SF8	RIBOSOMAL PROTEIN L34	coord: 1..92 coord: 226..249
IPR000271	Ribosomal protein L34	PANTHER	PTHR14503	MITOCHONDRIAL RIBOSOMAL PROTEIN 34 FAMILY MEMBER	coord: 1..92 coord: 226..249

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg023483.1	Spg023483.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome