Spg023460 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg023460
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Protein of unknown function (DUF3245)
Location	scaffold13: 10009635 .. 10010313 (+)
RNA-Seq Expression	Spg023460
Synteny	Spg023460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGCAGCGCAATGGACGAGCAATATGACAAAATCCAGTATGAAAAAATGTGTAGATGATAATGAATCGACCGTGGTAGAACCTGAGAATCGACCTCCAGGGTCAGTATACATCTATCTAAATTTGACTATCACATTAAGCTGTTTACTAACTTTGGACCTGTTTCTCCAGCCTTGGACTTGGAGCCAAAGTAAAAAGCCAGTTCAGGAATGGACCTTCTAATGACCCACTTGATAGAAAACTATATGCCAAGTTGGATGCTGGGAAAAAGCAAGCTGCCAGAAAGGCGTCGGAGGATGCTCCCGTACTTAATAATGAAGATGATGAGGATGACAATGATGAAGAGAGTAAAACTGCCATCTTCGATAAGAAGCGAGCAGCAACTCCAGTAACTATGCCTCCTTTGCGGGCCAAGAAAAAACGGAGGTAACTACTTTTGTAGGTAGGGAATATTGATTATCAAACTGGTTGTCTGACAGTAAAAAAGCGAAGAGCAACTTAATAGGTCCCAAACCAGAGGTGAGTTTTGTTCAATCCATTTTAATACATCAGAAAAATGAAAATAGAACCAAAAATCATTATGAGTTACTTGTTCTATAGGGTATCTTATCTCTTAGAGGTTATTTTAGACAGTTCTGAATTCAAACTTGTTTCAAATTCTTGAAATAGAAATGGT

mRNA sequence

ATGCAGGCAGCGCAATGGACGAGCAATATGACAAAATCCAGTATGAAAAAATGTGTAGATGATAATGAATCGACCGTGGTAGAACCTGAGAATCGACCTCCAGGCCTTGGACTTGGAGCCAAAGTAAAAAGCCAGTTCAGGAATGGACCTTCTAATGACCCACTTGATAGAAAACTATATGCCAAGTTGGATGCTGGGAAAAAGCAAGCTGCCAGAAAGGCGTCGGAGGATGCTCCCGTACTTAATAATGAAGATGATGAGGATGACAATGATGAAGAGAGTAAAACTGCCATCTTCGATAAGAAGCGAGCAGCAACTCCAGTAACTATGCCTCCTTTGCGGGCCAAGAAAAAACGGAGGTAA

Coding sequence (CDS)

ATGCAGGCAGCGCAATGGACGAGCAATATGACAAAATCCAGTATGAAAAAATGTGTAGATGATAATGAATCGACCGTGGTAGAACCTGAGAATCGACCTCCAGGCCTTGGACTTGGAGCCAAAGTAAAAAGCCAGTTCAGGAATGGACCTTCTAATGACCCACTTGATAGAAAACTATATGCCAAGTTGGATGCTGGGAAAAAGCAAGCTGCCAGAAAGGCGTCGGAGGATGCTCCCGTACTTAATAATGAAGATGATGAGGATGACAATGATGAAGAGAGTAAAACTGCCATCTTCGATAAGAAGCGAGCAGCAACTCCAGTAACTATGCCTCCTTTGCGGGCCAAGAAAAAACGGAGGTAA

Protein sequence

MQAAQWTSNMTKSSMKKCVDDNESTVVEPENRPPGLGLGAKVKSQFRNGPSNDPLDRKLYAKLDAGKKQAARKASEDAPVLNNEDDEDDNDEESKTAIFDKKRAATPVTMPPLRAKKKRR

Homology

[Close]

BLAST of Spg023460 vs. NCBI nr
Match: KAG7025998.1 (hypothetical protein SDJN02_12496 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 168.7 bits (426), Expect = 3.1e-38
Identity = 91/119 (76.47%), Postives = 100/119 (84.03%), Query Frame = 0


Query: 3   AAQWTSNMTKSSMKKCVDDNESTVVEPENRPPGLGLGAKVKSQFRNGPSNDPLDRKLYAK 62
           AA+  S MT    K+  +DN+STVVEPENRPP LGLGAK+ SQFRNGPSNDPLDRKLYAK
Sbjct: 26  AAELMSKMTNCEWKETANDNKSTVVEPENRPPRLGLGAKISSQFRNGPSNDPLDRKLYAK 85

Query: 63  LDAGKKQAARKASEDAPVLNNEDDEDDNDE-ESKTAIFDKKRAATPVTMPPLRAKKKRR 121
           LDAGKKQAARK  ED PVLNNEDD+D++DE ESKTA+FDKKRA T VTMPPL  KKKRR
Sbjct: 86  LDAGKKQAARKMLEDTPVLNNEDDDDNDDEGESKTAMFDKKRAPTRVTMPPLWTKKKRR 144

[Close]

BLAST of Spg023460 vs. NCBI nr
Match: XP_023514247.1 (uncharacterized protein LOC111778569 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023514248.1 uncharacterized protein LOC111778569 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 167.5 bits (423), Expect = 6.8e-38
Identity = 90/119 (75.63%), Postives = 99/119 (83.19%), Query Frame = 0


Query: 3   AAQWTSNMTKSSMKKCVDDNESTVVEPENRPPGLGLGAKVKSQFRNGPSNDPLDRKLYAK 62
           AA+  S MT    K+  +DN+STVVEPENRPP LGLGAK+ SQFRNGPSNDPLDRKLYAK
Sbjct: 26  AAELMSKMTNCEWKETANDNKSTVVEPENRPPRLGLGAKISSQFRNGPSNDPLDRKLYAK 85

Query: 63  LDAGKKQAARKASEDAPVLNNEDDED-DNDEESKTAIFDKKRAATPVTMPPLRAKKKRR 121
           LDAGKKQAARK  ED PVLNNEDD+D D++EESKTA+FDKKRA T VTMPP   KKKRR
Sbjct: 86  LDAGKKQAARKMLEDTPVLNNEDDDDNDDEEESKTAMFDKKRAPTRVTMPPFWTKKKRR 144

[Close]

BLAST of Spg023460 vs. NCBI nr
Match: XP_022959368.1 (uncharacterized protein LOC111460361 [Cucurbita moschata] >XP_022959369.1 uncharacterized protein LOC111460361 [Cucurbita moschata] >XP_022959370.1 uncharacterized protein LOC111460361 [Cucurbita moschata] >XP_022959371.1 uncharacterized protein LOC111460361 [Cucurbita moschata] >XP_022959372.1 uncharacterized protein LOC111460361 [Cucurbita moschata] >XP_022959373.1 uncharacterized protein LOC111460361 [Cucurbita moschata])

HSP 1 Score: 167.2 bits (422), Expect = 8.9e-38
Identity = 89/118 (75.42%), Postives = 98/118 (83.05%), Query Frame = 0


Query: 3   AAQWTSNMTKSSMKKCVDDNESTVVEPENRPPGLGLGAKVKSQFRNGPSNDPLDRKLYAK 62
           AAQ  S MTK+  K+  +DNEST+ EP NRPP LGLGAK+    RNGPSNDP+DRKLYAK
Sbjct: 26  AAQLMSKMTKTEWKEPANDNESTMFEPGNRPPRLGLGAKITHNIRNGPSNDPIDRKLYAK 85

Query: 63  LDAGKKQAARKASEDAPVLNNEDDEDDNDEESKTAIFDKKRAATPVTMPPLRAKKKRR 121
           LDA KKQAARK SED PVLNNEDD+DDND+ES+TAIFDKKRAAT V M PLRAKKKRR
Sbjct: 86  LDAVKKQAARKVSEDTPVLNNEDDDDDNDKESRTAIFDKKRAATRVFMTPLRAKKKRR 143

[Close]

BLAST of Spg023460 vs. NCBI nr
Match: XP_022964046.1 (uncharacterized protein LOC111464189 [Cucurbita moschata])

HSP 1 Score: 166.4 bits (420), Expect = 1.5e-37
Identity = 89/119 (74.79%), Postives = 100/119 (84.03%), Query Frame = 0


Query: 3   AAQWTSNMTKSSMKKCVDDNESTVVEPENRPPGLGLGAKVKSQFRNGPSNDPLDRKLYAK 62
           AA+  S MT    K+  +DN+STVVEPENRPP LGLGAK+ SQFRNGPSNDPLDRKLYAK
Sbjct: 26  AAELMSKMTNCEWKETANDNKSTVVEPENRPPRLGLGAKISSQFRNGPSNDPLDRKLYAK 85

Query: 63  LDAGKKQAARKASEDAPVLNNEDDED-DNDEESKTAIFDKKRAATPVTMPPLRAKKKRR 121
           LDAGKKQAARK  ED PV+NNEDD+D D++EES+TA+FDKKRA T VTMPPL  KKKRR
Sbjct: 86  LDAGKKQAARKMLEDTPVVNNEDDDDNDDEEESETAMFDKKRAPTRVTMPPLWTKKKRR 144

[Close]

BLAST of Spg023460 vs. NCBI nr
Match: KAG6593666.1 (Rop guanine nucleotide exchange factor 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 165.2 bits (417), Expect = 3.4e-37
Identity = 90/119 (75.63%), Postives = 99/119 (83.19%), Query Frame = 0


Query: 3   AAQWTSNMTKSSMKKCVDDNESTVVEPENRPPGLGLGAKVKSQFRNGPSNDPLDRKLYAK 62
           AA+  S MT    K+  +DN+STVVEPENRPP LGLGAK+ SQFRNGPSNDPLDRKLYAK
Sbjct: 583 AAELMSKMTNCEWKETANDNKSTVVEPENRPPRLGLGAKISSQFRNGPSNDPLDRKLYAK 642

Query: 63  LDAGKKQAARKASEDAPVLNNEDDEDDNDE-ESKTAIFDKKRAATPVTMPPLRAKKKRR 121
           LDAGKKQAARK  ED PVLNNEDD+D++DE ESKTA+FDKKRA T VTMP L  KKKRR
Sbjct: 643 LDAGKKQAARKMLEDTPVLNNEDDDDNDDEGESKTAMFDKKRAPTRVTMPRLWTKKKRR 701

[Close]

BLAST of Spg023460 vs. ExPASy TrEMBL
Match: A0A6J1H4P0 (uncharacterized protein LOC111460361 OS=Cucurbita moschata OX=3662 GN=LOC111460361 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.3e-38
Identity = 89/118 (75.42%), Postives = 98/118 (83.05%), Query Frame = 0


Query: 3   AAQWTSNMTKSSMKKCVDDNESTVVEPENRPPGLGLGAKVKSQFRNGPSNDPLDRKLYAK 62
           AAQ  S MTK+  K+  +DNEST+ EP NRPP LGLGAK+    RNGPSNDP+DRKLYAK
Sbjct: 26  AAQLMSKMTKTEWKEPANDNESTMFEPGNRPPRLGLGAKITHNIRNGPSNDPIDRKLYAK 85

Query: 63  LDAGKKQAARKASEDAPVLNNEDDEDDNDEESKTAIFDKKRAATPVTMPPLRAKKKRR 121
           LDA KKQAARK SED PVLNNEDD+DDND+ES+TAIFDKKRAAT V M PLRAKKKRR
Sbjct: 86  LDAVKKQAARKVSEDTPVLNNEDDDDDNDKESRTAIFDKKRAATRVFMTPLRAKKKRR 143

[Close]

BLAST of Spg023460 vs. ExPASy TrEMBL
Match: A0A6J1HHS0 (uncharacterized protein LOC111464189 OS=Cucurbita moschata OX=3662 GN=LOC111464189 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 7.4e-38
Identity = 89/119 (74.79%), Postives = 100/119 (84.03%), Query Frame = 0


Query: 3   AAQWTSNMTKSSMKKCVDDNESTVVEPENRPPGLGLGAKVKSQFRNGPSNDPLDRKLYAK 62
           AA+  S MT    K+  +DN+STVVEPENRPP LGLGAK+ SQFRNGPSNDPLDRKLYAK
Sbjct: 26  AAELMSKMTNCEWKETANDNKSTVVEPENRPPRLGLGAKISSQFRNGPSNDPLDRKLYAK 85

Query: 63  LDAGKKQAARKASEDAPVLNNEDDED-DNDEESKTAIFDKKRAATPVTMPPLRAKKKRR 121
           LDAGKKQAARK  ED PV+NNEDD+D D++EES+TA+FDKKRA T VTMPPL  KKKRR
Sbjct: 86  LDAGKKQAARKMLEDTPVVNNEDDDDNDDEEESETAMFDKKRAPTRVTMPPLWTKKKRR 144

[Close]

BLAST of Spg023460 vs. ExPASy TrEMBL
Match: A0A6J1KE33 (uncharacterized protein LOC111494843 OS=Cucurbita maxima OX=3661 GN=LOC111494843 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.7e-37
Identity = 89/119 (74.79%), Postives = 98/119 (82.35%), Query Frame = 0


Query: 3   AAQWTSNMTKSSMKKCVDDNESTVVEPENRPPGLGLGAKVKSQFRNGPSNDPLDRKLYAK 62
           AA+  S MT    K+  +DN+STVVEPENRPP LGLGAK+ SQFRNGPSNDPLDRKLYAK
Sbjct: 26  AAELMSKMTNCEWKETANDNKSTVVEPENRPPRLGLGAKISSQFRNGPSNDPLDRKLYAK 85

Query: 63  LDAGKKQAARKASEDAPVLNNEDDED-DNDEESKTAIFDKKRAATPVTMPPLRAKKKRR 121
           LDAGKKQAARK  ED  VLNNEDD+D D++EESKTA+FDKKRA T VTMPP   KKKRR
Sbjct: 86  LDAGKKQAARKMLEDTRVLNNEDDDDNDDEEESKTAMFDKKRAPTRVTMPPFWTKKKRR 144

[Close]

BLAST of Spg023460 vs. ExPASy TrEMBL
Match: A0A6J1DX89 (uncharacterized protein LOC111024338 OS=Momordica charantia OX=3673 GN=LOC111024338 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 4.8e-37
Identity = 85/118 (72.03%), Postives = 98/118 (83.05%), Query Frame = 0


Query: 3   AAQWTSNMTKSSMKKCVDDNESTVVEPENRPPGLGLGAKVKSQFRNGPSNDPLDRKLYAK 62
           A QW +NMT       + ++E TVVEPENRPP LGLGAKV  QFR+GPSNDPLDRKLYAK
Sbjct: 25  AEQWLNNMTP------IGNDEPTVVEPENRPPRLGLGAKVSRQFRSGPSNDPLDRKLYAK 84

Query: 63  LDAGKKQAARKASEDAPVLNNEDDEDDNDEESKTAIFDKKRAATPVTMPPLRAKKKRR 121
           LDAGK+QAARK  ED  +LNNEDDEDD++EES+TA+FDKKRAATPV MPP R+KKK+R
Sbjct: 85  LDAGKRQAARKTKEDTLILNNEDDEDDDEEESRTAMFDKKRAATPVAMPPFRSKKKQR 136

[Close]

BLAST of Spg023460 vs. ExPASy TrEMBL
Match: A0A5D3BV19 (Putative RNA binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001090 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 5.3e-36
Identity = 87/119 (73.11%), Postives = 97/119 (81.51%), Query Frame = 0


Query: 3   AAQWTSNMTKSSMKKCVDDNESTVVEPENRPPGLGLGAKVKSQFRNGPSNDPLDRKLYAK 62
           AAQ  S MT S  K+   DNEST +EPE RPP LGLGAKV   FRNGPSNDPLDRKLYAK
Sbjct: 60  AAQLMSKMTNSEWKETGVDNESTAIEPEMRPPRLGLGAKVTRHFRNGPSNDPLDRKLYAK 119

Query: 63  LDAGKKQAARKASEDAPVLNNEDDE-DDNDEESKTAIFDKKRAATPVTMPPLRAKKKRR 121
           LDAGKKQAARK SE+ PVL+N+DD+ DD +EES+TAIF+KKRAA PVTMPP + KKKRR
Sbjct: 120 LDAGKKQAARKMSEETPVLDNKDDDGDDEEEESRTAIFNKKRAAKPVTMPPFQGKKKRR 178

[Close]

BLAST of Spg023460 vs. TAIR 10
Match: AT3G61370.1 (Protein of unknown function (DUF3245) )

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-10
Identity = 42/106 (39.62%), Postives = 62/106 (58.49%), Query Frame = 0


Query: 3   AAQWTSNMTKSSMKKCVDDNESTVVEPENRPPGLGLGAKVKSQFRNGPSNDPLDRKLYAK 62
           A +W ++MT+ +      +++      E RP  LGLGA+V  Q +  PS+DPLD+KL AK
Sbjct: 24  AEKWVASMTRPT------EDDPIETAQEERPHRLGLGAQVSRQTKRRPSDDPLDQKLEAK 83

Query: 63  LDAGKKQAARKASEDAPVLNN--EDDEDDNDEESKTAIFDKKRAAT 107
             A K++ AR  +E A    N  +D EDD++ ESK+  F KK+  T
Sbjct: 84  FAAVKRKNARLVAEAAGSSKNAGDDSEDDDESESKSQAFGKKKKNT 123

[Close]

BLAST of Spg023460 vs. TAIR 10
Match: AT4G07940.1 (Protein of unknown function (DUF3245) )

HSP 1 Score: 56.2 bits (134), Expect = 2.1e-08
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 36  LGLGAKVKSQFRNGPSNDPLDRKLYAKLDAGKKQAARKASEDAPVLNN--EDDEDDNDEE 95
           LGLGA+V  Q +  PS+DPLD+KL AK  AGK++ AR  +E A    N  +D+ED ++ E
Sbjct: 63  LGLGAQVSRQKKRRPSDDPLDQKLEAKFAAGKRKNARLVAESAGSSKNAGDDNEDGDESE 122

Query: 96  SKTAIF--DKKRAATP 108
           SK+  F   KK  +TP
Sbjct: 123 SKSQAFGMKKKNTSTP 138

The following BLAST results are available for this feature:

BLAST of Spg023460 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025998.1	3.1e-38	76.47	hypothetical protein SDJN02_12496 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023514247.1	6.8e-38	75.63	uncharacterized protein LOC111778569 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022959368.1	8.9e-38	75.42	uncharacterized protein LOC111460361 [Cucurbita moschata] >XP_022959369.1 unchar...	[more]
XP_022964046.1	1.5e-37	74.79	uncharacterized protein LOC111464189 [Cucurbita moschata]	[more]
KAG6593666.1	3.4e-37	75.63	Rop guanine nucleotide exchange factor 3, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of Spg023460 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg023460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H4P0	4.3e-38	75.42	uncharacterized protein LOC111460361 OS=Cucurbita moschata OX=3662 GN=LOC1114603...	[more]
A0A6J1HHS0	7.4e-38	74.79	uncharacterized protein LOC111464189 OS=Cucurbita moschata OX=3662 GN=LOC1114641...	[more]
A0A6J1KE33	3.7e-37	74.79	uncharacterized protein LOC111494843 OS=Cucurbita maxima OX=3661 GN=LOC111494843...	[more]
A0A6J1DX89	4.8e-37	72.03	uncharacterized protein LOC111024338 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A5D3BV19	5.3e-36	73.11	Putative RNA binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]

BLAST of Spg023460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61370.1	1.3e-10	39.62	Protein of unknown function (DUF3245)	[more]
AT4G07940.1	2.1e-08	47.37	Protein of unknown function (DUF3245)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021641	Protein of unknown function DUF3245	PFAM	PF11595	DUF3245	coord: 4..119 e-value: 3.2E-9 score: 37.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	PANTHER	PTHR35741	FACTOR CWC22-LIKE PROTEIN, PUTATIVE (DUF3245)-RELATED	coord: 2..119
None	No IPR available	PANTHER	PTHR35741:SF1	FACTOR CWC22-LIKE PROTEIN, PUTATIVE (DUF3245)-RELATED	coord: 2..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg023460.1	Spg023460.1	mRNA