Spg023392 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg023392
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTPR_REGION domain-containing protein
Locationscaffold13: 478502 .. 487364 (+)
RNA-Seq ExpressionSpg023392
SyntenySpg023392
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAGGCGCATGAAGGCGACCAAAGGCGCCATCAGGCGACTGCTTGGTTGAAGGAGCTCGCTTTTGCTTCCTTCAAGGCGCAACAACCTCAGATCGCCTCGCCTCTCGCCATAGGCGAGCGCCTGGGGTCGCCTTGAAAACACTGCTCCCTAACTAACTGCTAATATACCGTTACCAATATTCCTAATTACACCTTACTTACATTCCTATCACAACCCCTCGGGGGGATTGTCTTGCAGTATATTCTTTCAATGCCTGCTTAATCCTTATCTAGTTTCTTGTTTGTGGGAGGTGATAGTTCCAAGGAAGGTTCAGTTCTCTGTCTCGCAGACCATTCTCAATAGGGTCAACACTTTTGATTTGCTTTTGAGAATGATGCTTTCTTTGGTGGGTCCTTTTTGTTGTATCCATCAGAAGGCTGAGGACGATCTTGATCACTTGCTTTGGGATTGTGATTTCGCACGGTCCGTATGGAGTTGTTTCTTTGATGTGTTTGATTTCTAGGTTTCTAGACAATGTCAATGCTGAGAGATGATCGAGTAGTTCGTTCTCCATTTGCGTTTTCGGGAGATAGGGTGTATTTGCAAAGTGTGGGGATTTGTGGCATTCTTTGGGGCTTGTGGGGTGAAAGGAATAATAGGATCTTCAGGGGGACCGAGAGATATCCTAGTGATGTTTGGTCCAATGTTAGGTTCTATGTATCGCTTGGACCATTAGTGACCAAAGTCTTTTGTAATTATTCTTTAAGTGTCATTTTTCTTGATTGGAACCCCTTTCTTTAGGCAGTTTCTTTTTGTGGGGTTTGGTTTTTTGGATGCCCTTGTATTCTTTCATTTCTTTCTCAATGAAAGTTTGGTTTATTATTAAAAAAAACGAATGTTTCTCTGCTTTGAGGGTCATCATTTCTTTCTTGACATGACCCTGAAAAAAGTAGTTTCTTTCTGGTAACGCTAAAGGTTTGATTTTGTAACTCATATTTTCTCCGACCACTTTCCTTTGCTCCTTGAAGAAGGTAACTTTGTTTGGGATCCAAATCTTCCAGGCTTTAAGGTTGTCATTGAGCAATCTCTTCAGCAAGATAGATTTTTTGGGTGAGTTGGTTTCTAATAGTTTGGAAGCTAAGAAATTTGAAAGGTGTTCTCTTTTTCTTTTGAAACAAGAAACGAAACCTTTCATTGATATAATGAAAAGAGACTAATGCTCAAAAGATACAAACTCCACAAGGGAGTGGTAAAAACAAAGCAAACATAAATGTAAAGATAAGAATTATACACAAGAAATAAAATCATTCCAATTAAGATAAATGTCTTGGATAGAATAATTATCAAAAAGCTTAGAGAGAGAACACCACGAAGACGCCTTTAAACGAGCTGAATCGAGACAATCAAACTAGAAGAGATGAGAACTCTGAAAAATCCTTTGGTTTCTTTCCATCCACAATTCTGATAGCAGAGCTTTGATAGCATTGTACCATAAAAGTTTAGAGTTTGGTACCATGAAAGTGTAATCCACAAAAGAATATATGGTTCAAAGAATCCCCAGCCAAGTAACATAAGACACAAACGGATGACATAAGACAAACAGAAGAACGCTTCCTTTGTAAAATCTTTGAAGAGTTTAGGGAACTGTTAAGCATAATCCACAAAAGAATATTAATTCTTTTTGGTCATCTAACCAAGGTTGTTAACTCGTGAAACAGAACACGTATCGAAATCAAATTTTAGTGTATCGTGTATCGTGATGTATCGTATATCGGAAGTTTCAATTTGATAAGTAATATTTAAATATAAATAAAAATAGGATGACTTAAAATAGAGAAATAAATAGCCAAACATTAAATAAGTCCAAAATAAATATAAAAACATAAACTAACTTCAAAGTTCAAAATACCAAGAAAAGGTAAACATCAACTAACTTCAAAATAAGTATGAAAAAATATGAGAAACTTATGGAGGGAGAATAGCCATTTGAAAAAAAGAAAAAAAAAATGAAAGGACACATATCAAAGTGAATATTGGTATTGAGTACAGATGGCAGTTTGCTGGACACTTAGCTTAGTTTATTTAATTTCTTGAAAGGAGAATTAAGAATAGCCCTTTGAAAAAAAAAAAAAAATGAAAGGGCACCCTATTTTTTATTTAATTTCTCTTTTTCCCCAACAAATTTCCTTTCAAGTTTCACGCGTTTTCCCAATTTCTTTAACTCTCTCCCTCTTGTCTCGTCGTCTTCTTCAATCAAAGAGGCCCAAGCTCCTTCCTTTCACAGTGAAACTTTCATCTTCGTCTTCACTCTCAAACTCCTTGGACGAACACCGATAAATGGAAAATTATATTCATTGACCACATGATGAAGTTTTGGAAAAGAGTCCTTTGAAGGCGACTATAACATCCTGAAACAAAATACGGTTGCTTTGACACATTGAAAGAAACCACTCGACTGTTTGCTAGCATGTAAAAGGTAAAAGCCATGGGCTTCTTACATTAATATTTCTCTTCTGGATGGGGCTGAGTACCCCCTTAGACACGATGCAGTTGCTAAGAGCTAACTATGGTCTTGTACCAAAGAGCAACAAGTCATCAAGTGATGTGACCACTCCGTTTAGCAATAAGAATGTAATTCTGTTACTTTATGCATACCAGCCCTAAGCAGAGAAACCTTTTCCCATCAAATTAGCTTCTGTCACTTTTATTATTTACTCGTGTTGCATAAAATAGTGTTAGGTATCCAAACTAAGAAAAACACCAAAACACTAATATATTGCAATATCGAAACGGAACTACAATATTATGATAGCCTTTTGAGAGGACTAACTCTCTCCCAAAGTCCGACTATGAGACAATACCCAAAATTCTTCACACCATTCTGAGACCCTAACTTACCTATTTATAACCAAGACACAACCAAGGCACCCTAGCTAATTACTATTATACCCTTACTACCATTCTACTACTATTCTCCATATATCCCTAACTAGTACTCTCACAATACTCCACCCTTAAACGACATCTTGTCCTCAAGGTGTGCTTCAAAACACAAACTTTTTTTTTAAACACAGAACCCTCCCTTCATATATTGCAATAAAAAACTTAGTGGATTGTTGCTTCATCCACTGTGAGTGGTGGACAGAAGTGGTGGTTGACGGCGATTGGTCGCGATTCCGACAAATGGCGTCAATTGCTGGCAAAAGCTGGCAATGGTTGGCAATGACGGATGGTCGAGATGGTTGGCGGTGTAAGCTTGCCCAATGAAGATGAAGACCGCATGAGTAAAAGGTTGAACATTAGCTGCTAAGATGGATCTTTTCATGTGAAAATTGGATGTTAAGTAAGGGGCTTAAAATAAAGGAAAACCCAGCCCACAACCCAGTCTTGTTTAACCGTCCCCTTTTCTATCTTTGGAAGGAAATGGGCCTCACTTTTTTTTCTTGAATCTAGCTCATTAAGCAGCCTACCATCCCCCTTCCTTCTGGATTCTTCTCCCAACTGATGTTCCACAAGATCAGGGTTAGTTTCCCCCTTTTTTTCAAACACAGGAAAACACACTTTTTTTTAAACCTGGCTCTGATACCAATTGATTAGGTATCCAAACTAAGAAAAACACCAATACACTAACATATTGCAATATCAAAACAGAACTACAATATTACGATAGCCTTTCGAGAGGGCTAACTCTCTCCCAAAGTCCCACTATGAAACAATACCCAAAATTCTTCACACCCTTCTAAGACTCTAACTTACCTATTTATAACCAATACACAACCAAGACACCCTAGCTAATTACTATTATACCCTTACTACCATTCTACTACTATTCCCCATATATCCCTTACTAGTACTCTCACAAATAGAGGGTGATGCAAAGAGAATTTCGCTATAAAGAGCGAGTACTCCTAGAAAGAAGGGAATTTTTTCTTCCAGGTTAAGAACCTCTCTGTTTGCTTTTGATATTAGGGGGAAAAAGACAAGCCATCGCTCCCTTTTGGGCTTTTTCAAAGGAATGAACAGAAATAATTCCAGAATTATCTAGGGTTGGTTATCTGCAGCCAATCCCACTTGATAGTCTCACATTTGCTAGTAAATTCAACAAATTACAATACTCAACTTCCTCCTCTATCTTCCTTAAGATTTCTTCTAACAACCACCAACCAAGAACTAGAACAAGAATCTCACATATCACACACTTTGCCTCTTTTTCTACAGATAACTCATATATATATTTGTGTGTATGTGTATATATATATTGGAAATAAGATGCATAAAAGAAACTTGAAGTTTTTGTAGTTCTATTTTTCATTCAGCTACAAATAAAGATTACACTTACATAAAATACATAAAGGAAAGGCTAAAAAGGTAAGTAAATCTAATTAATCCTAAACATTGGGGATTAAACAATGTAGTAAAAAATAATAAATCTAACTTTCCTAAGGTTATTTACACCATTGCCAACTTGTTACAAAGTTCATTTGATTCTTTGATAAATGTTCGAAACCTGTTTAATCAAGAGATCTTCATTCTTTCTGACTCCCCCCGGGAGGCAACACTACTTTGTTCCATCCCACTAAATGAGATATTTTCTAATCATCCCTACATTCCCAAAAAATTCCACATATATTTTGGCCGAAGGCATTGCTTATCTAGAACCTTCAAGAGAAAGTTGCAAAAAAACCACCTGCAGTTTCACCAAGGTGTTTTGAAATCGTGTAGGAATGAGATTGTACTTTTAGAAAATGTTCTAAAAAATTTATTCTGCAGGGACTTGAGTAAAAGATATTTACAATGGCGTAGGAACTTGTGCCTTTAGATCTAACTTCATCTTTCAGTCTATGAATTATTCCTTTTTTTTTTTAATCTTGCATAGTTTTGAGGGTGTCCAGTCATCTTGATTGCCCACATCATGCTATATTCTAATTGAAAATAAAAGCTCTATTTCTGATTAAAGTTACTTGAAGTGGATTACCAATTTTAAACTTTTTCTGCAAAGTTGGACAGATAACTTGAGTGAAATAATGTACTTTGTATTGAATATGTGAGGGATGGAGAGATTGTGGATATTCCAGGTTTCTATAAAATTCTGAACAAATATTTAGGTGCATTGCAGGGTGCGGCTGTTATCTCAGCTGAATTAGGTGAATATGCTCGAGCAGCCTCTTTTCTTGAAGACTTGATAAAGGTTGGTTTTATTTTGGATTCAGAATATGGGATTTTCTCATTGATGTTGGTTTTAGGTGATATGATTATTATCGTTTATTCTTTATATAGGAGAAGTCAGATGATTCTGACATTTTCCGCTTGCTTGGGGAGGTCAAGTATAAACTTAAAGATTATAGTGGGAGTATTGCGGCATACAAGAGTTCCACAATGGTTAGTCTTCTCTAACAATTAGGAAAAGGATTTAGAAGGAATTTTTTCTCTCCTCATGCCCTCTCCCTCTCCCCTAACTGGCGATCTCCCTCCCCTTCACCTTCCCTCTTCCCTCCCCGTTAGTCTCTCTCCCCCTTTCCACAGTCGTTGTTGACACTTCCAAAGAGAGTGCAAGGAGGGAGAGGCAGAGGAAAGAGTGGAAGGAGAAAGAAAATTATTTTTTTATTTTTTATTTTTAATTGTCATCTCAAATTTCTTTTGGAGTAAGCTTGTAAACTTAGCCTATTTAAAGTCCAGTCAACTTTCTGTTTTGAGGTCTAATAGTTTTCGTAGGATACTATTTAAAGCCTATTTCTCAAACTCAAGTGTTAAAGTGTATCTTTTGAAAATTGAAGGACTAAAATGGCCTATTAGTGAAAACTTAGGGGCCATATATAAGTGTAATTTTTCCTTGCATTCTTTTATCGGCATAAGGCATAAGATTGATCTAAATAATACATATTTGAGAGCAATAATAGACAGTAGAATTATCCATGGTTAACAAATTTTATAAAAACATTCGTATCAACAAAGCTCAGAGAAACTTTTTAATAATTTTAGATAATGATATCATATTACATAATAATAGTTCATCTTAATTTTTATTTTATCCTTTAAATTTAAAGAGTATAAAAGTAAATATTTTTCATGCCAATATCCATATTTTATTTTTGTTAAGAAATTGAAATCTTTTCATTGTGATTATGAAAAGCACATGAGGAGGATGTACAAGACCCATGCCTTATGATAAGGCTCGCTATTTCTTTCTTCTTTCTTTTTTTTGTTGATAAAAAATGAAACTTTTCGTCGAAGAAATGAAAAGAGACTAATGTTCAAAAGATACCAACTCTACATAGGAATGAAATAAAGAAAGAAAATAACATTACAAATAAAAGATAAAACCATCCCAATTTAATCATATATCACTTAAAGAAAAGGTTGTAAAAAGTTTGGAGGGAGAAACAACATGAAGAAGCTTTAGGTTTTGTTAATTCAAATTGATCCTGCCATGGGAGATGCTTATCCTAAAAAAAATTCTAATTCCTTTTCAACGATAATTTTGAAATAATAGCTGCTATAGATTTTTGTATGGGATAATTTTATTTTTTTATTAGTCTTTTATCTTTCAGCATTTTTTTCATTATCCTTTCCATTAATAATTAGTTTTAGTTCAAACTTCTCTTATATTTCTTTTTTTTTTTTTTTTTTGAATTCATCAACATTTGGGGGTGGGGGGATTCGAACCTCTGACGTCTTGGTCGAGGGTACATGCCAATTACCGCTGAGCTAAGCTCGCTTTGGCTATTTACCCATTATTGTGTTCTCAGAAAAATAAGATAAATAATTTCTCCAAAAACAACATGGTACCAAAGCAAAACCCTAGGCATTGGAAACCCTCACTATCAAAAACCCTAGCCGTTGGAATCCTAGCAACTGGTTACCACCATCATCGCCATAGTCTCCTTCTGATGCATCTCGTGGGTTTCAAGTCATTCGCAGTCATGGGTTTCAAGTTGTGGGTAGCAGTCGTTTGTCTTCCAATGTTGCAAATCTTCACGGTGGTCTTGTTTGTTGTTTGTTGTCACGTGGTTGTTGTTCGTGCTTCCTTCGACATTTTCCAACGGCGTTCAATCGTGGTTTGTTTATCACTCAAGTCGTCGCACTGCCTACTGCCAACGTCCGCCACACACTGTCCGCCGCAGAGCTATCCTTCATCTTTGTTCATCGTTGCATTGTCCTCCACCTGTTTGTTTATCTCAATTGATCGCTCCAATGTCTTTTCTCTCACCACGACGAAACAAACTAGGACATCTTCCAACGTCTTTGTTCATCATTGCACTATCCTCCACCTGTTCGCTTATCTCAATAGATCATTCCAATGTCTTTTCTCTCACCACGACGAAACAAACGGATACATCTTCTATTAGTTTTCTTGCTCATCAAGATGTTATCTTTTCTTGCTTTTTTGTGGAGCACAATAAGCAAAAATTATTGATTATGGATTCCAGAGAGTCAGATCACTTGACTAGCGATATTAGTGTTTTTCATCAATTGAAATCACACCTTAGTCACTCATTAGTCTAAATAGCAGATGGATCTCTCTTTGAAGTTACAAGAACAAGGTCAATTAAATTGTTAAACGATCTCTTACTGTCGAATGGTTTTTATGTCCTGAATTGAATTACAATTTGATATCAATGAGCAAACTTACGAGTGATTTGCATTGTATATTTAAATTTTATTCGAACTTGTGTGAATTTCAAGAGGTGAGTTTAGGAAAGGTGATTGGCATTGCTAAGCAGCATGGTGGCCTTTATCCTATTAAGGAAAATCATCATTCAACCTTGGTCATAAGTCTTCTTCCAATTCTGTTAGTTTTATTCTCGAGTCTACTTCCAGTTCTAGATCCTTGTCAAGTGAAAATCAAGTCACATTATGGCACTTTCATCTTGGTCATCCAACTTTTTTTTATATTGAAAATTTGTTTCGCCATTTATTCAATAATAATAATAAAAAAACCGACGAGTTTCAAAAAATAAAAAAGTCATTTTCAATGCGAAATTTGCCAACTCTCAAAACTGTGAGAGTACTAGTTAGGAATATATGGAGGATAGTAGTAGAATGGTAGTAAGGGTATAATGGTAATTAGCTAGGTTGCCTTGGTTATAAATAGGGAAGTTAGGAGCCTTAGAAGTGTGGAGAATTTTAGTAATAGTGTCCATTGTGGGACTCTTGGGAGAGAAATAGCTCTCTCAAAAGGCTATTGGTATTTTGTAGTTTCTTTTGATATTGCAATATATTACTGTCTTGTGTTTTCAGTGTTCAGGTACCTAACAATTTGGTATCAAAGCATCGATTCTAGTCATGGATTGGAAAGAGAACAAAATTTAAAGAAGGACAAAGAAGTGTGAATGGAAGTCACGAAAGAAACCGAAAGAAATGTGAATGGAAAGAGAATAAAAACTAAAGGACAAAGTAGCAGTGAAAAAGAGAGGAAAATCAGACTAATCGAAAGCAGAGTCGAAGAGTTGCAGGAAGACATCAATCGTATGCAAAAATTTCTCCAAAAACACAAAGGAAAATTGTTTGAGAAATTCCATAAATGTTCTTGAGCACGAATTCCTTGGGCGCATACAAGAACTATCAACCAAAGGCTGGGTGGTCAAAAGGGAGAGGAAGGCAACGACGGCGCGGACAATGTTGAGGTTGTAAGAAAAAGCCAGAAGGGCAGCTGAAAATGAAAGAGGTCGAAGGAAAAGAACCTGTACCCTACTGGAGTTCGAAGACTAAGCACAGGTGGGCTGGAAAGAGACTCGACAAAACTAGAGCTGCCTTTGCTAAGAGAGAACGATCATTGAAAATTTTATGGGAAGAAGTGAAGTCGTGGAAGGGGCGACTATTCGACAATGGTGGAGCTCGAGGGAAGGGTCTTGAAGAAAATGGAGAAAAGAAAACATGA

mRNA sequence

ATGGCAAAGGCGCATGAAGGCGACCAAAGGCGCCATCAGGCGACTGCTTGGTTGAAGGAGCTCGCTTTTGCTTCCTTCAAGGCGCAACAACCTCAGATCGCCTCGCCTCTCGCCATAGGCGAGCGCCTGGGTATATTCTTTCAATGCCTGCTTAATCCTTATCTAGTTTCTTGTTTGTGGGAGGTGATAGTTCCAAGGAAGGTTCAGTTCTCTGTCTCGCAGACCATTCTCAATAGGGTCAACACTTTTGATTTGCTTTTGAGAATGATGCTTTCTTTGGTGGGTCCTTTTTGTTGTATCCATCAGAAGGCTGAGGACGATCTTGATCACTTGCTTTGGGATTGTGATTTCGCACGGTTTGATTTTGTAACTCATATTTTCTCCGACCACTTTCCTTTGCTCCTTGAAGAAGGTAACTTTGTTTGGGATCCAAATCTTCCAGGCTTTAAGTTGCTAAGAGCTAACTATGGTCTTGTACCAAAGAGCAACAAGTCATCAAGTGATGTGACCACTCCGTTTAGCAATAAGAATTGGATTGTTGCTTCATCCACTGTGAGTGGTGGACAGAAGTGGTGGTTGACGGCGATTGGTCGCGATTCCGACAAATGGCGTCAATTGCTGGCAAAAGCTGGCAATGGTGCATTGCAGGGTGCGGCTGTTATCTCAGCTGAATTAGGTGAATATGCTCGAGCAGCCTCTTTTCTTGAAGACTTGATAAAGGAGAAGTCAGATGATTCTGACATTTTCCGCTTGCTTGGGGAGGTCAAGTATAAACTTAAAGATTATAGTGGGAGTATTGCGGCATACAAGAGTTCCACAATGTCTCCTTCTGATGCATCTCGTGGGTTTCAAGTCATTCGCAGTCATGGGTTTCAAGTTGTGGGTAGCAGTCGTTTGTCTTCCAATGTTGCAAATCTTCACGGTGGTCTTGTTTGTTGTTTGTTGTCACGTGGTTGTTGTTCGTGCTTCCTTCGACATTTTCCAACGGCGTTCAATCGTGGTTTGTTTATCACTCAAGTCGTCGCACTGCCTACTGCCAACGTCCGCCACACACTGTCCGCCGCAGAGCTATCCTTCATCTTTGTTCATCGTTGCATTGTCCTCCACCTGTTTTGTTCAGAAGGGCAGCTGAAAATGAAAGAGGTCGAAGGAAAAGAACCTGTACCCTACTGGAGTTCGAAGACTAAGCACAGGTGGGCTGGAAAGAGACTCGACAAAACTAGAGCTGCCTTTGCTAAGAGAGAACGATCATTGAAAATTTTATGGGAAGAAGTGAAGTCGTGGAAGGGGCGACTATTCGACAATGGTGGAGCTCGAGGGAAGGGTCTTGAAGAAAATGGAGAAAAGAAAACATGA

Coding sequence (CDS)

ATGGCAAAGGCGCATGAAGGCGACCAAAGGCGCCATCAGGCGACTGCTTGGTTGAAGGAGCTCGCTTTTGCTTCCTTCAAGGCGCAACAACCTCAGATCGCCTCGCCTCTCGCCATAGGCGAGCGCCTGGGTATATTCTTTCAATGCCTGCTTAATCCTTATCTAGTTTCTTGTTTGTGGGAGGTGATAGTTCCAAGGAAGGTTCAGTTCTCTGTCTCGCAGACCATTCTCAATAGGGTCAACACTTTTGATTTGCTTTTGAGAATGATGCTTTCTTTGGTGGGTCCTTTTTGTTGTATCCATCAGAAGGCTGAGGACGATCTTGATCACTTGCTTTGGGATTGTGATTTCGCACGGTTTGATTTTGTAACTCATATTTTCTCCGACCACTTTCCTTTGCTCCTTGAAGAAGGTAACTTTGTTTGGGATCCAAATCTTCCAGGCTTTAAGTTGCTAAGAGCTAACTATGGTCTTGTACCAAAGAGCAACAAGTCATCAAGTGATGTGACCACTCCGTTTAGCAATAAGAATTGGATTGTTGCTTCATCCACTGTGAGTGGTGGACAGAAGTGGTGGTTGACGGCGATTGGTCGCGATTCCGACAAATGGCGTCAATTGCTGGCAAAAGCTGGCAATGGTGCATTGCAGGGTGCGGCTGTTATCTCAGCTGAATTAGGTGAATATGCTCGAGCAGCCTCTTTTCTTGAAGACTTGATAAAGGAGAAGTCAGATGATTCTGACATTTTCCGCTTGCTTGGGGAGGTCAAGTATAAACTTAAAGATTATAGTGGGAGTATTGCGGCATACAAGAGTTCCACAATGTCTCCTTCTGATGCATCTCGTGGGTTTCAAGTCATTCGCAGTCATGGGTTTCAAGTTGTGGGTAGCAGTCGTTTGTCTTCCAATGTTGCAAATCTTCACGGTGGTCTTGTTTGTTGTTTGTTGTCACGTGGTTGTTGTTCGTGCTTCCTTCGACATTTTCCAACGGCGTTCAATCGTGGTTTGTTTATCACTCAAGTCGTCGCACTGCCTACTGCCAACGTCCGCCACACACTGTCCGCCGCAGAGCTATCCTTCATCTTTGTTCATCGTTGCATTGTCCTCCACCTGTTTTGTTCAGAAGGGCAGCTGAAAATGAAAGAGGTCGAAGGAAAAGAACCTGTACCCTACTGGAGTTCGAAGACTAAGCACAGGTGGGCTGGAAAGAGACTCGACAAAACTAGAGCTGCCTTTGCTAAGAGAGAACGATCATTGAAAATTTTATGGGAAGAAGTGAAGTCGTGGAAGGGGCGACTATTCGACAATGGTGGAGCTCGAGGGAAGGGTCTTGAAGAAAATGGAGAAAAGAAAACATGA

Protein sequence

MAKAHEGDQRRHQATAWLKELAFASFKAQQPQIASPLAIGERLGIFFQCLLNPYLVSCLWEVIVPRKVQFSVSQTILNRVNTFDLLLRMMLSLVGPFCCIHQKAEDDLDHLLWDCDFARFDFVTHIFSDHFPLLLEEGNFVWDPNLPGFKLLRANYGLVPKSNKSSSDVTTPFSNKNWIVASSTVSGGQKWWLTAIGRDSDKWRQLLAKAGNGALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFRLLGEVKYKLKDYSGSIAAYKSSTMSPSDASRGFQVIRSHGFQVVGSSRLSSNVANLHGGLVCCLLSRGCCSCFLRHFPTAFNRGLFITQVVALPTANVRHTLSAAELSFIFVHRCIVLHLFCSEGQLKMKEVEGKEPVPYWSSKTKHRWAGKRLDKTRAAFAKRERSLKILWEEVKSWKGRLFDNGGARGKGLEENGEKKT
Homology
[Close]
BLAST of Spg023392 vs. NCBI nr
Match: XP_038881142.1 (uncharacterized protein LOC120072738 [Benincasa hispida])

HSP 1 Score: 107.1 bits (266), Expect = 4.1e-19
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 0 

Query: 214 ALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFRLLGEVKYKLKDYSGSIAAYKSST 273
           A++GAAV SAELGEYARAAS LEDLIKEK DDSDIFRLLGEVKYKLKDY GS+AAYKS+T
Sbjct: 171 AMEGAAVASAELGEYARAASLLEDLIKEKLDDSDIFRLLGEVKYKLKDYDGSVAAYKSAT 230

Query: 274 MSPSDASRGFQVIR 288
           M   D +  F+V+R
Sbjct: 231 MLSEDVN--FEVLR 242

[Close]
BLAST of Spg023392 vs. NCBI nr
Match: XP_008465106.1 (PREDICTED: uncharacterized protein LOC103502794 [Cucumis melo])

HSP 1 Score: 106.3 bits (264), Expect = 7.0e-19
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 0 

Query: 214 ALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFRLLGEVKYKLKDYSGSIAAYKSST 273
           AL+GAAV SAELGEYA+AAS LEDLIKEKSDDSDIFRLLGEVKYKLKDY GS+AAYKS+T
Sbjct: 195 ALEGAAVTSAELGEYAQAASLLEDLIKEKSDDSDIFRLLGEVKYKLKDYDGSVAAYKSAT 254

Query: 274 MSPSDASRGFQVIR 288
               D +  F+V+R
Sbjct: 255 KLSEDVN--FEVLR 266

[Close]
BLAST of Spg023392 vs. NCBI nr
Match: XP_031738478.1 (uncharacterized protein LOC101220521 isoform X1 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 1.6e-18
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 0 

Query: 214 ALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFRLLGEVKYKLKDYSGSIAAYKSST 273
           AL+GAAV SAELGEYA+AAS LEDLIKEKSDDSDIFRLLGEVKYKLKDY GS+AAYKS+T
Sbjct: 207 ALEGAAVTSAELGEYAQAASLLEDLIKEKSDDSDIFRLLGEVKYKLKDYDGSVAAYKSAT 266

Query: 274 MSPSDASRGFQVIR 288
               D +  F+V+R
Sbjct: 267 KLFEDVN--FEVLR 278

[Close]
BLAST of Spg023392 vs. NCBI nr
Match: XP_031738479.1 (uncharacterized protein LOC101220521 isoform X2 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 1.6e-18
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 0 

Query: 214 ALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFRLLGEVKYKLKDYSGSIAAYKSST 273
           AL+GAAV SAELGEYA+AAS LEDLIKEKSDDSDIFRLLGEVKYKLKDY GS+AAYKS+T
Sbjct: 200 ALEGAAVTSAELGEYAQAASLLEDLIKEKSDDSDIFRLLGEVKYKLKDYDGSVAAYKSAT 259

Query: 274 MSPSDASRGFQVIR 288
               D +  F+V+R
Sbjct: 260 KLFEDVN--FEVLR 271

[Close]
BLAST of Spg023392 vs. NCBI nr
Match: XP_004144414.1 (uncharacterized protein LOC101220521 isoform X3 [Cucumis sativus] >KAE8650870.1 hypothetical protein Csa_001713 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 1.6e-18
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 0 

Query: 214 ALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFRLLGEVKYKLKDYSGSIAAYKSST 273
           AL+GAAV SAELGEYA+AAS LEDLIKEKSDDSDIFRLLGEVKYKLKDY GS+AAYKS+T
Sbjct: 195 ALEGAAVTSAELGEYAQAASLLEDLIKEKSDDSDIFRLLGEVKYKLKDYDGSVAAYKSAT 254

Query: 274 MSPSDASRGFQVIR 288
               D +  F+V+R
Sbjct: 255 KLFEDVN--FEVLR 266

[Close]
BLAST of Spg023392 vs. ExPASy TrEMBL
Match: A0A1S3CN41 (uncharacterized protein LOC103502794 OS=Cucumis melo OX=3656 GN=LOC103502794 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.4e-19
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 0 

Query: 214 ALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFRLLGEVKYKLKDYSGSIAAYKSST 273
           AL+GAAV SAELGEYA+AAS LEDLIKEKSDDSDIFRLLGEVKYKLKDY GS+AAYKS+T
Sbjct: 195 ALEGAAVTSAELGEYAQAASLLEDLIKEKSDDSDIFRLLGEVKYKLKDYDGSVAAYKSAT 254

Query: 274 MSPSDASRGFQVIR 288
               D +  F+V+R
Sbjct: 255 KLSEDVN--FEVLR 266

[Close]
BLAST of Spg023392 vs. ExPASy TrEMBL
Match: A0A5D3DC07 (TPR_REGION domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00710 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.9e-18
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 0 

Query: 214 ALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFRLLGEVKYKLKDYSGSIAAYKSST 273
           AL+GAAV SAELGEYA+AAS LEDLIKEKSDDSDIFRLLGEVKYKLKDY GS+AAYKS+T
Sbjct: 108 ALEGAAVTSAELGEYAQAASLLEDLIKEKSDDSDIFRLLGEVKYKLKDYDGSVAAYKSAT 167

[Close]
BLAST of Spg023392 vs. ExPASy TrEMBL
Match: A0A6J1IZV0 (uncharacterized protein LOC111479948 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111479948 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-17
Identity = 55/74 (74.32%), Postives = 62/74 (83.78%), Query Frame = 0 

Query: 214 ALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFRLLGEVKYKLKDYSGSIAAYKSST 273
           A++GAAV SAELG+YA AAS LEDLIK KSDDSDIFRLLGEVKYKLKDY GSIAAYKS+T
Sbjct: 196 AMEGAAVTSAELGKYAEAASLLEDLIKVKSDDSDIFRLLGEVKYKLKDYDGSIAAYKSAT 255

Query: 274 MSPSDASRGFQVIR 288
               D +  F+V+R
Sbjct: 256 RISEDVN--FEVLR 267

[Close]
BLAST of Spg023392 vs. ExPASy TrEMBL
Match: A0A6J1IX11 (uncharacterized protein LOC111479948 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111479948 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-17
Identity = 55/74 (74.32%), Postives = 62/74 (83.78%), Query Frame = 0 

Query: 214 ALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFRLLGEVKYKLKDYSGSIAAYKSST 273
           A++GAAV SAELG+YA AAS LEDLIK KSDDSDIFRLLGEVKYKLKDY GSIAAYKS+T
Sbjct: 194 AMEGAAVTSAELGKYAEAASLLEDLIKVKSDDSDIFRLLGEVKYKLKDYDGSIAAYKSAT 253

Query: 274 MSPSDASRGFQVIR 288
               D +  F+V+R
Sbjct: 254 RISEDVN--FEVLR 265

[Close]
BLAST of Spg023392 vs. ExPASy TrEMBL
Match: A0A0A0LE87 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G640040 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-17
Identity = 55/71 (77.46%), Postives = 61/71 (85.92%), Query Frame = 0 

Query: 217 GAAVISAELGEYARAASFLEDLIKEKSDDSDIFRLLGEVKYKLKDYSGSIAAYKSSTMSP 276
           GAAV SAELGEYA+AAS LEDLIKEKSDDSDIFRLLGEVKYKLKDY GS+AAYKS+T   
Sbjct: 13  GAAVTSAELGEYAQAASLLEDLIKEKSDDSDIFRLLGEVKYKLKDYDGSVAAYKSATKLF 72

Query: 277 SDASRGFQVIR 288
            D +  F+V+R
Sbjct: 73  EDVN--FEVLR 81

[Close]
BLAST of Spg023392 vs. TAIR 10
Match: AT1G78915.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 5.5e-14
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 0 

Query: 214 ALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFRLLGEVKYKLKDYSGSIAAYKSS 273
           AL+GAAV   ELG+Y+RAA+FLE L KE+  D D+FRLLGEV Y+L +Y GSIAAYK S
Sbjct: 190 ALEGAAVTLTELGDYSRAAAFLEKLAKERPTDPDVFRLLGEVNYELNNYEGSIAAYKIS 248

[Close]
BLAST of Spg023392 vs. TAIR 10
Match: AT1G78915.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 5.5e-14
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 0 

Query: 214 ALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFRLLGEVKYKLKDYSGSIAAYKSS 273
           AL+GAAV   ELG+Y+RAA+FLE L KE+  D D+FRLLGEV Y+L +Y GSIAAYK S
Sbjct: 207 ALEGAAVTLTELGDYSRAAAFLEKLAKERPTDPDVFRLLGEVNYELNNYEGSIAAYKIS 265

[Close]
BLAST of Spg023392 vs. TAIR 10
Match: AT1G78915.3 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 5.5e-14
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 0 

Query: 214 ALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFRLLGEVKYKLKDYSGSIAAYKSS 273
           AL+GAAV   ELG+Y+RAA+FLE L KE+  D D+FRLLGEV Y+L +Y GSIAAYK S
Sbjct: 210 ALEGAAVTLTELGDYSRAAAFLEKLAKERPTDPDVFRLLGEVNYELNNYEGSIAAYKIS 268

The following BLAST results are available for this feature:
BLAST of Spg023392 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038881142.14.1e-1977.03uncharacterized protein LOC120072738 [Benincasa hispida][more]
XP_008465106.17.0e-1977.03PREDICTED: uncharacterized protein LOC103502794 [Cucumis melo][more]
XP_031738478.11.6e-1877.03uncharacterized protein LOC101220521 isoform X1 [Cucumis sativus][more]
XP_031738479.11.6e-1877.03uncharacterized protein LOC101220521 isoform X2 [Cucumis sativus][more]
XP_004144414.11.6e-1877.03uncharacterized protein LOC101220521 isoform X3 [Cucumis sativus] >KAE8650870.1 ... [more]
BLAST of Spg023392 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg023392 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CN413.4e-1977.03uncharacterized protein LOC103502794 OS=Cucumis melo OX=3656 GN=LOC103502794 PE=... [more]
A0A5D3DC072.9e-1888.33TPR_REGION domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A6J1IZV01.1e-1774.32uncharacterized protein LOC111479948 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1IX111.1e-1774.32uncharacterized protein LOC111479948 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A0A0LE871.1e-1777.46Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G640040 PE=4 SV=1[more]
BLAST of Spg023392 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G78915.15.5e-1466.10Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G78915.25.5e-1466.10Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G78915.35.5e-1466.10Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 56..119
e-value: 8.6E-7
score: 29.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 189..285
e-value: 8.5E-6
score: 27.2
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 214..270
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 432..451
NoneNo IPR availablePANTHERPTHR26312:SF126TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEINcoord: 212..283
NoneNo IPR availablePANTHERPTHR26312TETRATRICOPEPTIDE REPEAT PROTEIN 5coord: 212..283

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg023392.1Spg023392.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding