Spg023282 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg023282
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPhosphorylated adapter RNA export protein
Locationscaffold13: 7920258 .. 7925203 (-)
RNA-Seq ExpressionSpg023282
SyntenySpg023282
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACGTAAGTGCCACGTCACTGCCACGTAAGCTTTTTCTCCCAATCTTCATTTGCTTGTAACTTTCTCGTTTGAACTCCGATTTGAGCGATTCAAAATGCGTTGGAATCGTTTTTCCGTACTCTACAAAATGGACACTTTGAAACACTAAAAATTTTAGCAAATTAAAGTCTGTTATCATCAAAACATATAGTATGATTGAAGCTCGTAAAGCTAACACATTATCTCCAAACAACATTTTATATTTTTGATATCCAAATCCTCTTAGACTCTAAGAAAAAAAAATTATTGTTGTGTAAATAGTGTGTATGATTGATACTCATGTTTTGGTTGTTATTTTTATTTTTTACATAATCTTATTTATTTTGATATACTCCTCCACTTCACCGATCAAAAACTTCATACAGTACAACTATTTTTTTTTTTCTTCTTTTTCTTCTTCTTCTTTCTTTCTTTCTTTCTTTTAATTTCAATTCCAACAATTTTTTTTGGAAGAATCAATTCCAACGATATAGATTTATAATATCTCTCTAAAAATGAATAAAAATCAAGTAGAAAACTAATCATATTAAATTAAAATTTTCTTTAAAATATGAATTTTACCAAATACATATTAATCTTTTTATGCATTTTCAAATTCATAACTAAACACAAATTCAAATTTCGAATTCAAATTTAAAGTTTTTAAATTGGAACTAAACTTGGTTTTCAGATATAATGGAAATAAGAAATTAGTTTTTCGTTTTTTTTTTGAATTTTTTATTTTCAAAAACAATTTTCAAATCACAAACCAAACGTGACCTTAGAAACTCATCTATCAAAGGACATCCAAACTTATTAAATACATACCGTATAGGTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATATGGGAGTGGAGGATTCGAACCACATATCTCATGGTTATCAGTACATCTTTATGTCAGTTTTTTGACAATATGTGAGGGGGGGGATTTGAACCACATACATTATGGTTATCAGTACAAAGTTATGCCAGTTGAGCTAAACTTTTTTGGTCATCTTTATGCCAGTTGAGCTATGCTCTTGACCTGTATAGGTATCTTAGAATGACCGGACACCCAAGATGCTTAATCTTGAATTACCACCCAAAATGAAACTTTCGTTGTAAGGGTTATGTTTGATAATTTAACCTAAAAAATGCTGTGCAATTTTTTGAGTTAAAAATTGATTTTTTTTCCAAATAAAATAAAAATATATAAAAGAAAGAGAAACCAAACCCTTTCTTCTTTCTTTTCACTTCTCAAGTCTCAGGTGCTTCCACCTTCTTCTTCTTCACGCCGACTCCTCCTACCTTTCAGCAGCTCAGTGTCGCCGCCGTCGTTGTTCCACTCGTGCCGCCGCAGTCTCTGGCATAGCAGGTTGTATTAATTTTCTATTCTCTTGTTGTCACTGGTATTCTCCCAATCTCCATCTTTGTCTTTCTTCTCACTTGAAAAGCTCAAATCAGGGTTGTCTAATGAAAGGAAGGAGGAGTTCTTTCGATTTCATATTTATAACAATAGAAAAATAGCAACGACAAATAATCAGTTGCGGCAAATTGCGACTTTTCGAACTGCCGTCTTCTACCATCTGCCTTTTGATTTATTGCATATGCCTGTCAATTGAGGCTTTGATCATCTGTCTGTATATCTCTTTGGTCTCTGCTGAAAATTGCCTTAGCTAGTTTCTATTAATTTTCCAGCATCTCCCGTCTTCTTTATTTATCGAGAATCAGTCGAAGTAATCTATCGAATACCAATTTTCCCTGACAAGCATAAAGTCACAGATATTAGAATTAAAATAGTCTAGCCAAATTCCTTCCCAAAATCTATACCAAAATGGCTGGTTGTTTCTGGCTGAATGGATACCCTTTCATTTTTTCCAAGTAGTTATTAGGAATGATAGAAAGTGTCTCTAGAATGCTTGATTGTGTTCTGATAATTTTTGTTTCTCTTAATAAGGAGAGTGTCTGATTATTTTATGTAGTTAAGGCATCTAATGGATGGACAAGAGAACATACTTGAGGCCATATATGAAGATGATGATTTGGAAAATGATGATGTTGAAATGGTTGATGTGGAAGAAGGAGAGTTTGTTGAACCTAATATCAATTCGGATAAAAGCAGTATTGCAGACTGCCAAGCATCAAGTGTAGATCATAGAAGTAAAAATCGGAAACGTCGGACAAAGAAAAAGAAGAACAAAAGAAAGACTAGTGAGCCAGGTTCAAATGGCACTGATATCAACAGGTTAAGTGGAATTTTCTAATCATGTTGTATGCATTCAGTTGTATGGAAAAAGAAGAAATATTTCAAGCAGACTTTCTTGAGATATATATATTTTTTCTTTGGAAATTCATATAAGAAAATAAAATAAATGGATAGATTAATAGATTTGATAAGCAACCATTGAGAAATAGGAATGTCTAATCTGATTGCAATATTATTCTGATTTCTGTTTCTTTCAGGTTTGTCTTAGATGCATGCAGATGTTTGAAAGAGAAAAAATCATATATGGTATACACTGCTGTAGGTTGTCTGGGAATCTCTGCATTAAGTGAACTTATCAAAGAGGTATTATGAGTTTCTTAGAACCTGATATAAAAATATTTTGCTTGCCTGATGAAAATCTCTGACCTGTCCATTAATATTAGTTTGCAAACTTCCCTTCTGTTCTGTTTCACTTCAAAGTTATTATTTTTTTATGTTTTGTTTGAAAATGAACCGAATTGACCAGCACTAATTAACCAAACCAACGTAAATGAGTTTTATTTGTTTTTTTCTTTTGATTTTCATTCAGCCCCTGGTGAGTAAAACTCATGAATGTTTTACCACTGTGCCATATGCCTTTGTTCAGTACTTTTATCTATCCTCAATACTTTTCCTGGGGTCACGAGCGATTTTGCTGCCTTTCTGCTAAAAGGTGAAAATTTTCAGTTGAACTTATTTTTTCACTGGCCTGCCTGTGGCCATCGACTCCAGCAAGTATCATACCACAGTCACTCTTCATATTTAATCAGAATTATTTCCTACCATTGCAGATTCTGTTGCTGAAGCCATTTTGCTCCTTTTAACCCTGTTCTCTGAGGTGTGAACCACCATGGCTGGACTACTACATCTGTGCTATATAAGTTGATCTTATTATCCCAGCATATATTGGTTATGATCTCTGTAAGATATTTGTACTTTATTAGAAAAATTTTAGCATTGATCACAATTCACAATTCCTCTTGTCCATCCACTTCCCCGAAAATTCTACTCGCCCTCATTATTCTTACTGAAACTAGACGTTGTTGAAATCCGCTGGGAAGTTTTAACATGAACTTTTAACTGGATTGGCCAAACTAAAATATGCAGCTCAGTTGTGCATGTCCTATCATTTTTTTCATCTTGGGGTTTGAGATTTGCTTTAATGTGAGCTCTTGAAAATCCGTTTTCACTTTTTAAAAATTATAACCGTTTATTAAAATATTTCTATGCTGAAGCCCTTGCCTTGTTTTTCCCTTTTGAGTTACTTATGATGCTTTACTAGAGATAGGAAGAATACGTAATCGATGATTGATTTTGCTTCTAATTGTTTTAGCACTTCTCTTCTTTTACAATATGACACCATACGATCTATGTATACAAGTTGACATGTTGGACATTCAGGTCAATGCAATTCAGGCTTGTGGAGGCCAGATGACTGCAGATGGTAGGCGCCTTCGAACAGGAGGTGGCATATTATGGAGCATCATCAAAGCCCAGGAGCCAAATGCCTATAAAGAGATTATGAAACGAGCAAAAGAGTTTGAGGTTTGTAACTATACCTTTTTGGCGTAGTTTATAACTCACTAACTTTTAAGCGACTTATTCTTTTGTTTATACCAAATGAATGTGCAACTCTTATTTTGGTCGCATAGAAAAACATTATCAATATTGTTGGAGGACACTTTAAATTGTTTCAATGTGAAGACAAAGTTTTCATCTTTCTGAATGAGAGTGGCCTCAGTTTGCTAGGGAGCCTATATCTATCACTTCTCAAATTGTCGAGCTTATTTACTCTCTTCTTCTTTCTTCTTTTCTTTTGGATTATAATCGTATTTCGAAGAGTTGTGCTTTTGAAATTCATGCTTATTTTAGAATATGTGTCAAAGTCCCCAATCATTTGATCTTATGCATGAAATTTACCCTTATTAGTTATTTATAATTTGGTAGCATGAAGGATGAGCACAATCACACATATTTTTGTTTATTTCATAATGGAGCAGAAACAGTTTAAGAAACCAAATATCAGAAGAGAGGCTACAGGAACTGAGAACGAAAGTTCTCAAAAAGCTCCTCACATGTTCTCTGAAGGATCTTCTGGAGATCTACCGGACAGCTTCCAAAGCTTTACTCCAGAGCAGAATCGATCTAAAGAATCAAATTCCGAAGAAAAGCGATCATCTATTCACGATAGATTAAGAGTTCCAGTCTCATATGATGACGACCTCCTTCGAGAGAATCCGAAAGAGGAAGATACGACTTGATTGTGGTTAGATCTTCCCATTTTTTGAACAGTTACTGTTGGTTTTTTTTTAGTTCGTGTCTAACAAAATCAACAGTTTTTACCTCCAAAAAATGAGGCGGAAGAATGTTTTATTAGCTGAGTTAGTTCCATTTATTTTCAGAGCTTTTATGTTGGTTTTAATCCCAGCACAAATTTCTGCAGTTTGTTTTTGGTTATTGTGGTTGAGCGTTCTGCTTCTACAGGTGAGGATGGAATTATCATCACATGGAAAGAAATTGGATTTATTGGTTGTGAATGGAAAAAAGATTTGCAATAGCTCATACTTGTCATTTGAAAAGATTTGATAGAGAAAAGGAAAATCTAGAATGTACGACATGAGAAATGGTATGTGTTGACATTATATTGGAGCTTTGATTGCATTGTCATCA

mRNA sequence

ATGTCACGTAAGTGCCACGTCACTGCCACGTGCTTCCACCTTCTTCTTCTTCACGCCGACTCCTCCTACCTTTCAGCAGCTCAGTGTCGCCGCCGTCGTTGTTCCACTCGTGCCGCCGCAGTCTCTGGCATAGCAGCATCTCCCGTCTTCTTTATTTATCGAGAATCAGTCGAATTAAGGCATCTAATGGATGGACAAGAGAACATACTTGAGGCCATATATGAAGATGATGATTTGGAAAATGATGATGTTGAAATGGTTGATGTGGAAGAAGGAGAGTTTGTTGAACCTAATATCAATTCGGATAAAAGCAGTATTGCAGACTGCCAAGCATCAAGTGTAGATCATAGAAGTAAAAATCGGAAACGTCGGACAAAGAAAAAGAAGAACAAAAGAAAGACTAGTGAGCCAGGTTCAAATGGCACTGATATCAACAGGTTTGTCTTAGATGCATGCAGATGTTTGAAAGAGAAAAAATCATATATGGTATACACTGCTGTAGGTTGTCTGGGAATCTCTGCATTAAGTGAACTTATCAAAGAGGTATTATGA

Coding sequence (CDS)

ATGTCACGTAAGTGCCACGTCACTGCCACGTGCTTCCACCTTCTTCTTCTTCACGCCGACTCCTCCTACCTTTCAGCAGCTCAGTGTCGCCGCCGTCGTTGTTCCACTCGTGCCGCCGCAGTCTCTGGCATAGCAGCATCTCCCGTCTTCTTTATTTATCGAGAATCAGTCGAATTAAGGCATCTAATGGATGGACAAGAGAACATACTTGAGGCCATATATGAAGATGATGATTTGGAAAATGATGATGTTGAAATGGTTGATGTGGAAGAAGGAGAGTTTGTTGAACCTAATATCAATTCGGATAAAAGCAGTATTGCAGACTGCCAAGCATCAAGTGTAGATCATAGAAGTAAAAATCGGAAACGTCGGACAAAGAAAAAGAAGAACAAAAGAAAGACTAGTGAGCCAGGTTCAAATGGCACTGATATCAACAGGTTTGTCTTAGATGCATGCAGATGTTTGAAAGAGAAAAAATCATATATGGTATACACTGCTGTAGGTTGTCTGGGAATCTCTGCATTAAGTGAACTTATCAAAGAGGTATTATGA

Protein sequence

MSRKCHVTATCFHLLLLHADSSYLSAAQCRRRRCSTRAAAVSGIAASPVFFIYRESVELRHLMDGQENILEAIYEDDDLENDDVEMVDVEEGEFVEPNINSDKSSIADCQASSVDHRSKNRKRRTKKKKNKRKTSEPGSNGTDINRFVLDACRCLKEKKSYMVYTAVGCLGISALSELIKEVL
Homology
[Close]
BLAST of Spg023282 vs. NCBI nr
Match: KAG7013367.1 (hypothetical protein SDJN02_23531, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201.8 bits (512), Expect = 5.0e-48
Identity = 106/122 (86.89%), Postives = 115/122 (94.26%), Query Frame = 0 

Query: 61  HLMDGQENILEAIYEDDDLENDDVEMVDVEEGEFVEPNINSDKSSIADCQASSVDHRSKN 120
           HLMDGQENILEAIYE+DDLENDDVEMVDVEEGEFVE NI+++KSS+ D QA S+DH+SKN
Sbjct: 62  HLMDGQENILEAIYEEDDLENDDVEMVDVEEGEFVEGNISTEKSSLTDVQAPSIDHKSKN 121

Query: 121 RKRRTKKKKNKRKTSEPGSNGTDINRFVLDACRCLKEKKSYMVYTAVGCLGISALSELIK 180
           RKRR+KKKKNKRKT E GSNGTDINRFVLDACR LKEKKSYMVYTAVGCLG+SALSELIK
Sbjct: 122 RKRRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIK 181

Query: 181 EV 183
           EV
Sbjct: 182 EV 183

[Close]
BLAST of Spg023282 vs. NCBI nr
Match: KAG6574787.1 (hypothetical protein SDJN03_25426, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 198.7 bits (504), Expect = 4.2e-47
Identity = 105/121 (86.78%), Postives = 114/121 (94.21%), Query Frame = 0 

Query: 62  LMDGQENILEAIYEDDDLENDDVEMVDVEEGEFVEPNINSDKSSIADCQASSVDHRSKNR 121
           LMDGQENILEAIYE+DDLENDDVEMVDVEEGEFVE NI+++KSS+ D QA S+DH+SKNR
Sbjct: 75  LMDGQENILEAIYEEDDLENDDVEMVDVEEGEFVEGNISTEKSSLTDVQAPSIDHKSKNR 134

Query: 122 KRRTKKKKNKRKTSEPGSNGTDINRFVLDACRCLKEKKSYMVYTAVGCLGISALSELIKE 181
           KRR+KKKKNKRKT E GSNGTDINRFVLDACR LKEKKSYMVYTAVGCLG+SALSELIKE
Sbjct: 135 KRRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKE 194

Query: 182 V 183
           V
Sbjct: 195 V 195

[Close]
BLAST of Spg023282 vs. NCBI nr
Match: XP_023547831.1 (uncharacterized protein LOC111806680 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198.4 bits (503), Expect = 5.5e-47
Identity = 105/120 (87.50%), Postives = 113/120 (94.17%), Query Frame = 0 

Query: 63  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFVEPNINSDKSSIADCQASSVDHRSKNRK 122
           MDGQENILEAIYE+DDLENDDVEMVDVEEGEFVE NI+++KSS+ D QA S+DHRSKNRK
Sbjct: 1   MDGQENILEAIYEEDDLENDDVEMVDVEEGEFVEGNISTEKSSLTDVQAPSIDHRSKNRK 60

Query: 123 RRTKKKKNKRKTSEPGSNGTDINRFVLDACRCLKEKKSYMVYTAVGCLGISALSELIKEV 182
           RR+KKKKNKRKT E GSNGTDINRFVLDACR LKEKKSYMVYTAVGCLG+SALSELIKEV
Sbjct: 61  RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKEV 120

[Close]
BLAST of Spg023282 vs. NCBI nr
Match: XP_022959193.1 (uncharacterized protein LOC111460255 [Cucurbita moschata])

HSP 1 Score: 197.2 bits (500), Expect = 1.2e-46
Identity = 104/120 (86.67%), Postives = 113/120 (94.17%), Query Frame = 0 

Query: 63  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFVEPNINSDKSSIADCQASSVDHRSKNRK 122
           MDGQENILEAIYE+DDLENDDVEMVDVEEGEFVE NI+++KSS+ D QA S+DH+SKNRK
Sbjct: 1   MDGQENILEAIYEEDDLENDDVEMVDVEEGEFVEGNISTEKSSLTDVQAPSIDHKSKNRK 60

Query: 123 RRTKKKKNKRKTSEPGSNGTDINRFVLDACRCLKEKKSYMVYTAVGCLGISALSELIKEV 182
           RR+KKKKNKRKT E GSNGTDINRFVLDACR LKEKKSYMVYTAVGCLG+SALSELIKEV
Sbjct: 61  RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKEV 120

[Close]
BLAST of Spg023282 vs. NCBI nr
Match: XP_004144996.1 (uncharacterized protein LOC101205280 isoform X1 [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 6.1e-46
Identity = 103/122 (84.43%), Postives = 110/122 (90.16%), Query Frame = 0 

Query: 61  HLMDGQENILEAIYEDDDLENDDVEMVDVEEGEFVEPNINSDKSSIADCQASSVDHRSKN 120
           +LMDGQENILEAIYEDD LENDDVEM DVEEGEF++ NIN +KSS  D QA S D RSKN
Sbjct: 2   YLMDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKN 61

Query: 121 RKRRTKKKKNKRKTSEPGSNGTDINRFVLDACRCLKEKKSYMVYTAVGCLGISALSELIK 180
           RK RTKKKKNKRK+SEPGSNGTDINRFVL+ACR LKEKKSYMVYTAVGCLG+SALSELIK
Sbjct: 62  RKHRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKKSYMVYTAVGCLGVSALSELIK 121

Query: 181 EV 183
           EV
Sbjct: 122 EV 123

[Close]
BLAST of Spg023282 vs. ExPASy TrEMBL
Match: A0A6J1H592 (Phosphorylated adapter RNA export protein OS=Cucurbita moschata OX=3662 GN=LOC111460255 PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 5.9e-47
Identity = 104/120 (86.67%), Postives = 113/120 (94.17%), Query Frame = 0 

Query: 63  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFVEPNINSDKSSIADCQASSVDHRSKNRK 122
           MDGQENILEAIYE+DDLENDDVEMVDVEEGEFVE NI+++KSS+ D QA S+DH+SKNRK
Sbjct: 1   MDGQENILEAIYEEDDLENDDVEMVDVEEGEFVEGNISTEKSSLTDVQAPSIDHKSKNRK 60

Query: 123 RRTKKKKNKRKTSEPGSNGTDINRFVLDACRCLKEKKSYMVYTAVGCLGISALSELIKEV 182
           RR+KKKKNKRKT E GSNGTDINRFVLDACR LKEKKSYMVYTAVGCLG+SALSELIKEV
Sbjct: 61  RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKEV 120

[Close]
BLAST of Spg023282 vs. ExPASy TrEMBL
Match: A0A0A0KBJ7 (Phosphorylated adapter RNA export protein OS=Cucumis sativus OX=3659 GN=Csa_6G076770 PE=3 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.9e-46
Identity = 103/122 (84.43%), Postives = 110/122 (90.16%), Query Frame = 0 

Query: 61  HLMDGQENILEAIYEDDDLENDDVEMVDVEEGEFVEPNINSDKSSIADCQASSVDHRSKN 120
           +LMDGQENILEAIYEDD LENDDVEM DVEEGEF++ NIN +KSS  D QA S D RSKN
Sbjct: 2   YLMDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKN 61

Query: 121 RKRRTKKKKNKRKTSEPGSNGTDINRFVLDACRCLKEKKSYMVYTAVGCLGISALSELIK 180
           RK RTKKKKNKRK+SEPGSNGTDINRFVL+ACR LKEKKSYMVYTAVGCLG+SALSELIK
Sbjct: 62  RKHRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKKSYMVYTAVGCLGVSALSELIK 121

Query: 181 EV 183
           EV
Sbjct: 122 EV 123

[Close]
BLAST of Spg023282 vs. ExPASy TrEMBL
Match: A0A6J1KUZ4 (Phosphorylated adapter RNA export protein OS=Cucurbita maxima OX=3661 GN=LOC111498940 PE=3 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 3.8e-46
Identity = 103/120 (85.83%), Postives = 111/120 (92.50%), Query Frame = 0 

Query: 63  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFVEPNINSDKSSIADCQASSVDHRSKNRK 122
           MDGQENILEAIYE+DDLENDDVEMVDVEEGE VE NI+++KSS+ D QA S+DHRSKNRK
Sbjct: 1   MDGQENILEAIYEEDDLENDDVEMVDVEEGELVEGNISTEKSSLTDVQAPSIDHRSKNRK 60

Query: 123 RRTKKKKNKRKTSEPGSNGTDINRFVLDACRCLKEKKSYMVYTAVGCLGISALSELIKEV 182
           RR+KKKKNKRKT E GSNGTDINRFVLDACR LKEKKSYMVYTAVGCLG+SALSE IKEV
Sbjct: 61  RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSEFIKEV 120

[Close]
BLAST of Spg023282 vs. ExPASy TrEMBL
Match: A0A1S3CD38 (Phosphorylated adapter RNA export protein OS=Cucumis melo OX=3656 GN=LOC103499036 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.9e-45
Identity = 102/120 (85.00%), Postives = 108/120 (90.00%), Query Frame = 0 

Query: 63  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFVEPNINSDKSSIADCQASSVDHRSKNRK 122
           MDGQENILEAIYE D+ ENDDVEM DVEEGEF++ NIN +KSS  D QA S D RSKNRK
Sbjct: 1   MDGQENILEAIYEADEFENDDVEMADVEEGEFIDANINIEKSSFTDVQAPSTDQRSKNRK 60

Query: 123 RRTKKKKNKRKTSEPGSNGTDINRFVLDACRCLKEKKSYMVYTAVGCLGISALSELIKEV 182
           RRTKKKKNKRK+SEPGSNGTDINRFVLDACR LKEKKSYMVYTAVGCLG+SALSELIKEV
Sbjct: 61  RRTKKKKNKRKSSEPGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKEV 120

[Close]
BLAST of Spg023282 vs. ExPASy TrEMBL
Match: A0A5D3DLH5 (Phosphorylated adapter RNA export protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00350 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 7.3e-45
Identity = 101/120 (84.17%), Postives = 107/120 (89.17%), Query Frame = 0 

Query: 63  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFVEPNINSDKSSIADCQASSVDHRSKNRK 122
           MDG ENILEAIYE D+ ENDDVEM DVEEGEF++ NIN +KSS  D QA S D RSKNRK
Sbjct: 1   MDGHENILEAIYEADEFENDDVEMADVEEGEFIDANINIEKSSFTDVQAPSTDQRSKNRK 60

Query: 123 RRTKKKKNKRKTSEPGSNGTDINRFVLDACRCLKEKKSYMVYTAVGCLGISALSELIKEV 182
           RRTKKKKNKRK+SEPGSNGTDINRFVLDACR LKEKKSYMVYTAVGCLG+SALSELIKEV
Sbjct: 61  RRTKKKKNKRKSSEPGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKEV 120

[Close]
BLAST of Spg023282 vs. TAIR 10
Match: AT3G20430.1 (CONTAINS InterPro DOMAIN/s: Phosphorylated adapter RNA export protein, RNA-binding domain (InterPro:IPR019385); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 3; Metazoa - 56; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). )

HSP 1 Score: 92.0 bits (227), Expect = 5.2e-19
Identity = 60/130 (46.15%), Postives = 82/130 (63.08%), Query Frame = 0 

Query: 63  MDGQENILEAIYEDDDLEN-DDVEMVDVEEGEFVEPN-------INSDKSSIADCQASSV 122
           M+G+E++L+AI E+D  EN +DVEMVDVEEGE V  +        N D   + D +A   
Sbjct: 1   MEGEESLLDAINEEDGFENLEDVEMVDVEEGEIVVDHDLDSGERQNDDGDGVKDKEAILG 60

Query: 123 DHRSKNRKRRTKKKKNKRKTSEP-GSNGTDINRFVLDACRCLKEKKSYMVYTAVGCLGIS 182
           +     +  + K+KK K+K   P       ++ FV D CR LKEKKSYM+YTAVGCLGI+
Sbjct: 61  EKNGLQQTNKNKRKKKKKKRKGPVMDKPMSVDWFVRDTCRRLKEKKSYMIYTAVGCLGIA 120

Query: 183 ALSELIKEVL 184
           ALS+L+ EV+
Sbjct: 121 ALSDLVNEVV 130

The following BLAST results are available for this feature:
BLAST of Spg023282 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7013367.15.0e-4886.89hypothetical protein SDJN02_23531, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6574787.14.2e-4786.78hypothetical protein SDJN03_25426, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023547831.15.5e-4787.50uncharacterized protein LOC111806680 [Cucurbita pepo subsp. pepo][more]
XP_022959193.11.2e-4686.67uncharacterized protein LOC111460255 [Cucurbita moschata][more]
XP_004144996.16.1e-4684.43uncharacterized protein LOC101205280 isoform X1 [Cucumis sativus][more]
BLAST of Spg023282 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg023282 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1H5925.9e-4786.67Phosphorylated adapter RNA export protein OS=Cucurbita moschata OX=3662 GN=LOC11... [more]
A0A0A0KBJ72.9e-4684.43Phosphorylated adapter RNA export protein OS=Cucumis sativus OX=3659 GN=Csa_6G07... [more]
A0A6J1KUZ43.8e-4685.83Phosphorylated adapter RNA export protein OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A1S3CD381.9e-4585.00Phosphorylated adapter RNA export protein OS=Cucumis melo OX=3656 GN=LOC10349903... [more]
A0A5D3DLH57.3e-4584.17Phosphorylated adapter RNA export protein OS=Cucumis melo var. makuwa OX=1194695... [more]
BLAST of Spg023282 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G20430.15.2e-1946.15CONTAINS InterPro DOMAIN/s: Phosphorylated adapter RNA export protein, RNA-bindi... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038092Phosphorylated adapter RNA export protein, RNA-binding domain superfamilyGENE3D1.10.10.1440coord: 139..183
e-value: 1.0E-6
score: 30.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..133
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..140
IPR039047Phosphorylated adapter RNA export proteinPANTHERPTHR13135CYTOSOLIC RESINIFERATOXIN BINDING PROTEIN RBP-26coord: 42..182

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg023282.1Spg023282.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport
biological_process GO:0006408 snRNA export from nucleus
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0003723 RNA binding