Spg023210 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg023210
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Tubulin-specific chaperone A
Location	scaffold13: 6991584 .. 6996179 (+)
RNA-Seq Expression	Spg023210
Synteny	Spg023210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCGAGGATAAAACTGCTGAGACTGTGGTTGGGATGGGAGAAACGACTGTTGTTGAGGATAAAATGGCTGCTGTGGATATGGGTAAAAACCAGGAGGAGACTGAAAATTTGGATTGAATGGATCTGGATTAGCGACTGGGTTTTGATTTCTATTTTGATTTAAGGGAGGAGGACGAACAGTGGTTTGAACAGGGGAGGTAAGAGGGGGATTTTCAATAGGGTTGTGGATTGGGGTAACAATAGGAGTAGTGGTAGGTGTACTAGGGATGACGACAGGGGTCTTTTGATTTGAGAGAGAGGTAGAGGAAGATCCTTCTTCATTAGTCATTGCTGAGGAAGATGATGAGCTCACAAAAGCTCTGATACCATATAAAGCTGCAGTAATATATTCTGTACAACTCTTGTATTGTAATAAAATGTCTCGATACAATTACAGAAAGAAAGGGAGCAAATATATAGAAACAGAAAGAGACAGCTGAAGCTATCCTATAGGCTAATACAATAACCAACTTTACAAAGATAAAATGCAGAATTAGCCCAAGAATAAAAACAGCGAATTAACATTCTAATAAATAATGAATGGAAGTGGTATGAAAAAATTTTCATACTACCGTAGCACTAGAAATTTTCCCATCTACTAGAGAACCTTGTTTTTATTCAATTTTCTCTAGATATACATCAACCTCTAAAAAAAGGTAATTAAATGTGCAAAATTTTTTATAAGAACTTATGCAACACACAAATGCATGAGCCCCACATACAAAACTTCATATTCATATAAATTATGCAACATAGTCCTTTCCTCACATACATTCTTTCAAGTATTCAGCAATCATACAATTTACATTAACATACATAATATTCTGCTTCTCATATATTATTTTTCATTCATAACTATAACACATTTTCAACACACATTTCCCAACCTAAAAGCAAATTCCAAATATTTATAATTTGAACTTGAACTCAAAAATTAGTTTGAAGGCCAAAATTTACCCAATTGGTCCTTCACCCAATGCATATCCTTAGATCTTGATTTATTCACATCACTTCGAACGGTCGATTCCTTAGATCTTAAGAGATTAAGACATTGTTTGATAACTATTTGGTTTTTGAAAATGATGATTGTTTCTTCCTCATTTCCTTATAATGATTTTCATCTTTGTTAAGGACACACTTGAATTCCTAACCGAATTCTAAAAAAAAAACAAGTTTTTGAAAATTATTTTTTAAGTTTTCAAATTTTGAATCCATTTTTGAAAACAAGGAAAAATATAGATAACAAAACAAATAAACTTGTAGATAAAAGCAGTGTTTATATGCTTAATTTTCAAAAACCAAAAACAAAAAACGAAATGGTTAGGCCTCGTTTAATAACCATTTTGTTTGTTTATTTGATTTTTGAAAGTTAAGCCGATAAACACTACTTCCACCCATAAGTTTCTTCGTTTTGTTACCAAACTCCTTTTCATATTTTCAAAAACCAACTCAAGTTTTAAAAACTAAAAAAAAATAGTTTTCAAAAACATGTTTTTGGCTTTGGAATTTGGTTAAGAATTTAGATGTATCATTAACAAAGTTGAAAATCATAGAAGGAAATTAGAAGAAAACAAACATAATTTTCAAAAACCAAAAACCGAAAATCAAATGGTTATCGAACGGAATCTTAATAAACTAGACTTAAATTATTATTTTATTAATGATGTTTTTAACCCAAAAAATCCCCTTTTTTTGTTTTTCGTTTTTTGAAAAATTCCCTCTTTCATTTCTGTTTTCCCATTTTCCTTCTTCTCCATAGATCCCTTCGTCGCAGTCTACATCCATCGCATCGCCATCGCTTTTTCTTTCTTCTCTTCCGAACCGCCATTGTTCTACAACAGCTCACGCTCAGTCAATTTTCAGAAGAAGAGATTAGGGTTTCTTCGACGCCCAAGTTCTTCAGGAACAGGTACGTTTTCCCTTTTCTTCTTCTTCGAATACACCAGATTCATTTCCAATCAAAACCCTATCAGTATATTAATGTGTTCGTGTGGTTATGCTGATGTTAATCTTTAGTCGTTTCTGCAAATGAAGTGGGACTTTGATTGTAATGTATACATCTCTGCTTGGAAATTCTTCTTGGACAGCAAACTTGTTTAATGTTATGAATATGGTATCTTAGGCTATGTTTGGGAAAATCAATTTCCTCTAAAATGAACATGTTTGGCTAAGAGATTCGACGGCTAGGGCTTTGTGAGAGAGTTGATGAATTGGAAACGGAATATGGTATCTTAGGAAACTTACGAGTGTTGGCGAGGGTGCGGCGGTGACAGAATTGGAGAACATCGCCGGCTATGGCATTGTGAGAGAAATTACAAGGTTTAAATGTGAGGATGGTTTTTTAATCTCAGCGTTCTGTAGGTTTAAATTAGAAGGTTTAATTTTGTTTTGGGCTGATTTCAAAGTGATTCATCAAATACATCTTAGTCATTTTGATTTCTTTTGGTTCGTTTCTCTCCTTTCTGTATCGTCCTCTTCCCTTTTTGCTCGTATTCTGTTAAGCCACTGTTCTGAAGTCAGATCAGGAGTGCCAGACCCATTCGAGCACAAACAAGCAAAGACCAGGCAGCAGTTAAATCTCTTCAATCCAGTCCTTTACAATTTATTAGGTTGATTTAGTTTAGAATTTGGCTTAATTACTTTCTGAAATCCTTATTTTTTATTATTTTAGGATTTAGGATGTGTAGGGCTCAATAAGAATTTGTAAAATGGGTCAGTAAGAATTGTAGTAGGTCTTTTGGCTTATGTTTTTTGCTGATTTCTGACCCCTTGTAATTTTGGGGCTAAATTGCTTCAATTCAGTGAATTATGTTCAGAAGATACTTGTCCTAATAGGATGTATGTTTGTGGTTTCCAAATCCATGATAAATGCTTCTTGTGATAGGTAAGTATGGCTACTGTAAAAAACCTCAAGATTAAGACAGCAACCTGCAAACGCATCATCAAGGAGTTGCATTCTTATGAGAAGGAGGTAGAGAGAGAAGCTGCCAAAACAGCTGACATGAAAGAAAAAGGAGCTGACCCTTATGACCTTAAGCAACAGGTACATAAATGTTTTGTATTCTTCCTAATCAGAACTTTTAATGATTGTTGTTTGCTGACTGCTCGTGGCTTTGTTTGTGCCATCTTTGAATATCTAAAACAGGACTTCTTAGACGTTCACAACCTTGTGATAGACTGAAAATATGAACATTAGAATTTGTAAGCGTGAAGATAAGTGATCTAGAATATGAAACGAAGAATGCTCTCGAATTTGGAGTCTAGAGATGGTCATCAGGGTAGAACTTTTGAAATTATCCGTAGCCTTTAACTTTCTCACTGCGGTTGAACTTTATTTTCAGAAAGGTATGAAGTCAAAACTACGAACTAAAATGTTACTCCTCCGTTCAGAATGGCCATAGAGCAACTCTTGTATATTAAGATTCTAGATTTTGGTATGGCTGATTACCACAAATATTCAACATTGATTCAAAGGAGATGATTGAGCAGTTTCTTCCCCATCCTCCTTTTCGGGAACAGAGAATTTTTTTGTGACAGGTTGGGATTTGTGCTATTGTTTGGGGGTTGTAGGGTAAGAGGAACAATAGGACCTTTAGAGGGATGGATGAGAATCCTCATGATGTTTGGTCCCTTGCTAGATATTATGTTTCTCTTTGGATGTTAGTGACATGTCTTTTTTGTAATTATCAAGTCTCATTCATATGGATTGGAGCCCCTTTATCTAATGGAGTCTCTTTTTGGGGACTTGGTTTTTTTGTTTGTCCTTGTATTCTTTCATTTTTTTCTCAACGAAAGTGTGGTTCTTCATTAAAAAAAAAAAAAAAAATGTATTCAACATTGATTCATTTGAGCTTCATGTTTACTCTTTTAGCTTCTGGGGAATGGAGATTGAATGTAATGCCATCATCACGTGAATCTTCTTCTTCAATTAATCTTTGTATTATTACAATTTTACAGTTAGCATTCTCTTTGTAAGTAGGAAAATGTGCTGGCTGAATCAAGGATGATGGTTCCCGATTGTCACAAGCGTCTGGAGGCTGCCTTAGCTGATCTGAAAGGAGCATTGGTATTATCATTAGCTTTTCTTTTCATTCTTCCCTTTTTCGCTCTTCTGAAGAGCTCGATTCTTGAAGGTTTTCTGCACGTGCCCAGTTTTCATAAGTCAACTAAAACAAACCTTTTCACCTCCTCCATCTCCAGGCTGAACTGGAAAAATCAACTCAAGAGAAAGGCCCAGAATTCGATGATGCTCGGAGCACAATCGCTGAGATCGAAAGTTTCCTTAAGACGACAGAGGAATAGCTGTGAGTTCGACACTGATCTTAATTACCGAAAATGAAATTTTATATGAATGATCGATTGCTGTTAGACGTTATTCATCAAAGTATTGCTTTGCAATATAGTTCTCATATATTCGGCTTTTGGATGCTATGTTTTACTTTGAAGAATTTCATCTTGTGTTATTCACTACTATCATCAAGTGTAAGAATTAAACTCTTCTGCTGACTGTTGTTGTATTTAAAATATTTTGATGATGTTTGCCTGAATATAAGCAAG

mRNA sequence

GCCGAGGATAAAACTGCTGAGACTGTGGTTGGGATGGGAGAAACGACTGTTGTTGAGGATAAAATGGCTGCTGTGGATATGGATCCCTTCGTCGCAGTCTACATCCATCGCATCGCCATCGCTTTTTCTTTCTTCTCTTCCGAACCGCCATTGTTCTACAACAGCTCACGCTCAGTCAATTTTCAGAAGAAGAGATTAGGGTTTCTTCGACGCCCAAGTTCTTCAGGAACAGCAAACTTGTTTAATGTTATGAATATGGTAAGTATGGCTACTGTAAAAAACCTCAAGATTAAGACAGCAACCTGCAAACGCATCATCAAGGAGTTGCATTCTTATGAGAAGGAGGTAGAGAGAGAAGCTGCCAAAACAGCTGACATGAAAGAAAAAGGAGCTGACCCTTATGACCTTAAGCAACAGGGTAAGAGGAACAATAGGACCTTTAGAGGGATGGATGAGAATCCTCATGATGTTTGGTCCCTTGCTAGATATTATGTTTCTCTTTGGATGATGATGGTTCCCGATTGTCACAAGCGTCTGGAGGCTGCCTTAGCTGATCTGAAAGGAGCATTGGCTGAACTGGAAAAATCAACTCAAGAGAAAGGCCCAGAATTCGATGATGCTCGGAGCACAATCGCTGAGATCGAAAGTTTCCTTAAGACGACAGAGGAATAG

Coding sequence (CDS)

GCCGAGGATAAAACTGCTGAGACTGTGGTTGGGATGGGAGAAACGACTGTTGTTGAGGATAAAATGGCTGCTGTGGATATGGATCCCTTCGTCGCAGTCTACATCCATCGCATCGCCATCGCTTTTTCTTTCTTCTCTTCCGAACCGCCATTGTTCTACAACAGCTCACGCTCAGTCAATTTTCAGAAGAAGAGATTAGGGTTTCTTCGACGCCCAAGTTCTTCAGGAACAGCAAACTTGTTTAATGTTATGAATATGGTAAGTATGGCTACTGTAAAAAACCTCAAGATTAAGACAGCAACCTGCAAACGCATCATCAAGGAGTTGCATTCTTATGAGAAGGAGGTAGAGAGAGAAGCTGCCAAAACAGCTGACATGAAAGAAAAAGGAGCTGACCCTTATGACCTTAAGCAACAGGGTAAGAGGAACAATAGGACCTTTAGAGGGATGGATGAGAATCCTCATGATGTTTGGTCCCTTGCTAGATATTATGTTTCTCTTTGGATGATGATGGTTCCCGATTGTCACAAGCGTCTGGAGGCTGCCTTAGCTGATCTGAAAGGAGCATTGGCTGAACTGGAAAAATCAACTCAAGAGAAAGGCCCAGAATTCGATGATGCTCGGAGCACAATCGCTGAGATCGAAAGTTTCCTTAAGACGACAGAGGAATAG

Protein sequence

AEDKTAETVVGMGETTVVEDKMAAVDMDPFVAVYIHRIAIAFSFFSSEPPLFYNSSRSVNFQKKRLGFLRRPSSSGTANLFNVMNMVSMATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQGKRNNRTFRGMDENPHDVWSLARYYVSLWMMMVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDARSTIAEIESFLKTTEE

Homology

[Close]

BLAST of Spg023210 vs. NCBI nr
Match: XP_022155762.1 (tubulin-folding cofactor A [Momordica charantia])

HSP 1 Score: 178.7 bits (452), Expect = 5.5e-41
Identity = 99/135 (73.33%), Postives = 110/135 (81.48%), Query Frame = 0


Query: 89  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQGKRNNRTFR 148
           MATV+NLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQ         
Sbjct: 1   MATVRNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQ--------- 60

Query: 149 GMDENPHDVWSLARYYVSLWMMMVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDAR 208
                  +V + +R       MM+PDCHKRLEA+LADLKGALAELE+STQEKGPEFD+AR
Sbjct: 61  ------ENVLAESR-------MMIPDCHKRLEASLADLKGALAELEESTQEKGPEFDNAR 113

Query: 209 STIAEIESFLKTTEE 224
           STI+E+E+FLKTTEE
Sbjct: 121 STISEVENFLKTTEE 113

[Close]

BLAST of Spg023210 vs. NCBI nr
Match: XP_038907024.1 (tubulin-folding cofactor A [Benincasa hispida])

HSP 1 Score: 176.8 bits (447), Expect = 2.1e-40
Identity = 101/135 (74.81%), Postives = 107/135 (79.26%), Query Frame = 0


Query: 89  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQGKRNNRTFR 148
           MATVKNLKIKTATCKRIIKELHSYEKEVE EAAKTADMKEKGADPYDLKQQ         
Sbjct: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEIEAAKTADMKEKGADPYDLKQQ--------- 60

Query: 149 GMDENPHDVWSLARYYVSLWMMMVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDAR 208
                  +V + +R       MMVPDCHKRLE+AL DLKGALAELEKSTQEKGPEF+DAR
Sbjct: 61  ------ENVLAESR-------MMVPDCHKRLESALVDLKGALAELEKSTQEKGPEFNDAR 113

Query: 209 STIAEIESFLKTTEE 224
           STI EIESFL+TTEE
Sbjct: 121 STITEIESFLQTTEE 113

[Close]

BLAST of Spg023210 vs. NCBI nr
Match: XP_023006149.1 (tubulin-folding cofactor A [Cucurbita maxima] >XP_023006150.1 tubulin-folding cofactor A [Cucurbita maxima] >XP_023006151.1 tubulin-folding cofactor A [Cucurbita maxima] >XP_023006152.1 tubulin-folding cofactor A [Cucurbita maxima])

HSP 1 Score: 176.0 bits (445), Expect = 3.6e-40
Identity = 101/135 (74.81%), Postives = 105/135 (77.78%), Query Frame = 0


Query: 89  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQGKRNNRTFR 148
           MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQ         
Sbjct: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQ--------- 60

Query: 149 GMDENPHDVWSLARYYVSLWMMMVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDAR 208
                  +V + +R       MMVPDCHKRLE+ALADLKG L ELEKSTQ KGPEFDDAR
Sbjct: 61  ------ENVLAESR-------MMVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDAR 113

Query: 209 STIAEIESFLKTTEE 224
           S I EIESFLKTTEE
Sbjct: 121 SIITEIESFLKTTEE 113

[Close]

BLAST of Spg023210 vs. NCBI nr
Match: XP_022959143.1 (tubulin-folding cofactor A [Cucurbita moschata] >XP_022959144.1 tubulin-folding cofactor A [Cucurbita moschata] >XP_022959145.1 tubulin-folding cofactor A [Cucurbita moschata] >XP_022959146.1 tubulin-folding cofactor A [Cucurbita moschata])

HSP 1 Score: 175.6 bits (444), Expect = 4.7e-40
Identity = 101/135 (74.81%), Postives = 105/135 (77.78%), Query Frame = 0


Query: 89  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQGKRNNRTFR 148
           MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQ         
Sbjct: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQ--------- 60

Query: 149 GMDENPHDVWSLARYYVSLWMMMVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDAR 208
                  +V + +R       MMVPDCHKRLEAALADLKG L ELEKSTQ KGPEF+DAR
Sbjct: 61  ------ENVLAESR-------MMVPDCHKRLEAALADLKGTLDELEKSTQVKGPEFEDAR 113

Query: 209 STIAEIESFLKTTEE 224
           S I EIESFLKTTEE
Sbjct: 121 SIITEIESFLKTTEE 113

[Close]

BLAST of Spg023210 vs. NCBI nr
Match: XP_023548059.1 (tubulin-folding cofactor A [Cucurbita pepo subsp. pepo] >XP_023548060.1 tubulin-folding cofactor A [Cucurbita pepo subsp. pepo] >XP_023548061.1 tubulin-folding cofactor A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.9 bits (442), Expect = 7.9e-40
Identity = 100/135 (74.07%), Postives = 105/135 (77.78%), Query Frame = 0


Query: 89  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQGKRNNRTFR 148
           MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQ         
Sbjct: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQ--------- 60

Query: 149 GMDENPHDVWSLARYYVSLWMMMVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDAR 208
                  +V + +R       MMVPDCHKRLE+ALADLKG L ELEKSTQ +GPEFDDAR
Sbjct: 61  ------ENVLAESR-------MMVPDCHKRLESALADLKGTLDELEKSTQVRGPEFDDAR 113

Query: 209 STIAEIESFLKTTEE 224
           S I EIESFLKTTEE
Sbjct: 121 SIITEIESFLKTTEE 113

[Close]

BLAST of Spg023210 vs. ExPASy Swiss-Prot
Match: O04350 (Tubulin-folding cofactor A OS=Arabidopsis thaliana OX=3702 GN=TFCA PE=1 SV=2)

HSP 1 Score: 146.0 bits (367), Expect = 5.2e-34
Identity = 78/134 (58.21%), Postives = 98/134 (73.13%), Query Frame = 0


Query: 89  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQGKRNNRTFR 148
           MAT++NLKIKT+TCKRI+KELHSYEKEVEREAAKTADMK+KGADPYDLKQQ         
Sbjct: 1   MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQ--------- 60

Query: 149 GMDENPHDVWSLARYYVSLWMMMVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDAR 208
                  +V   +R       MM+PDCHKRLE+ALADLK  LAELE++ +++GPE +DA+
Sbjct: 61  ------ENVLGESR-------MMIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAK 112

Query: 209 STIAEIESFLKTTE 223
            T+A++E    T +
Sbjct: 121 KTVADVEKQFPTED 112

[Close]

BLAST of Spg023210 vs. ExPASy Swiss-Prot
Match: O75347 (Tubulin-specific chaperone A OS=Homo sapiens OX=9606 GN=TBCA PE=1 SV=3)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-06
Identity = 39/124 (31.45%), Postives = 62/124 (50.00%), Query Frame = 0


Query: 92  VKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQGKRNNRTFRGMD 151
           V+ +KIKT   KR++KE   YEKE +++  K   M+ +  + YD+K+Q +    +     
Sbjct: 6   VRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQES----- 65

Query: 152 ENPHDVWSLARYYVSLWMMMVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDARSTI 211
                             MM+PDC +RLEAA  DL+  L E EK  +E   E+ +AR  +
Sbjct: 66  -----------------RMMIPDCQRRLEAAYLDLQRIL-ENEKDLEE-AEEYKEARLVL 105

Query: 212 AEIE 216
             ++
Sbjct: 126 DSVK 105

[Close]

BLAST of Spg023210 vs. ExPASy Swiss-Prot
Match: Q6PEC1 (Tubulin-specific chaperone A OS=Rattus norvegicus OX=10116 GN=Tbca PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.7e-06
Identity = 39/124 (31.45%), Postives = 61/124 (49.19%), Query Frame = 0


Query: 92  VKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQGKRNNRTFRGMD 151
           V+ +KIKT   KR++KE   YEKE +++  K   MK +  + Y +K+Q +    +     
Sbjct: 6   VRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQES----- 65

Query: 152 ENPHDVWSLARYYVSLWMMMVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDARSTI 211
                             MM+PDC +RLEAA  DL+  L E EK  +E   E+ +AR  +
Sbjct: 66  -----------------RMMIPDCQRRLEAAYTDLRQIL-ESEKDLEE-AEEYKEARIVL 105

Query: 212 AEIE 216
             ++
Sbjct: 126 DSVK 105

[Close]

BLAST of Spg023210 vs. ExPASy Swiss-Prot
Match: P80585 (Tubulin-specific chaperone A OS=Gallus gallus OX=9031 GN=TBCA PE=1 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 3.5e-06
Identity = 40/124 (32.26%), Postives = 60/124 (48.39%), Query Frame = 0


Query: 92  VKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQGKRNNRTFRGMD 151
           ++ +KIKT   KR+ KE   YEKE +++  K   MK +  D Y +K+Q +    +     
Sbjct: 6   LRQIKIKTGVVKRLAKEKVMYEKEAKQQEEKIEKMKAEACDDYGIKKQAEILQES----- 65

Query: 152 ENPHDVWSLARYYVSLWMMMVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDARSTI 211
                             MM+PDC +RLE A ADL   L E EK  +E   E+ +ARS +
Sbjct: 66  -----------------RMMIPDCQRRLEIAHADLT-QLLENEKELEE-AEEYKEARSIL 105

Query: 212 AEIE 216
             ++
Sbjct: 126 ESVK 105

[Close]

BLAST of Spg023210 vs. ExPASy Swiss-Prot
Match: P48428 (Tubulin-specific chaperone A OS=Mus musculus OX=10090 GN=Tbca PE=1 SV=3)

HSP 1 Score: 52.4 bits (124), Expect = 7.8e-06
Identity = 38/124 (30.65%), Postives = 61/124 (49.19%), Query Frame = 0


Query: 92  VKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQGKRNNRTFRGMD 151
           V+ +KIKT   +R++KE   YEKE +++  K   MK +  + Y +K+Q +    +     
Sbjct: 6   VRQIKIKTGVVRRLVKERVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQES----- 65

Query: 152 ENPHDVWSLARYYVSLWMMMVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDARSTI 211
                             MM+PDC +RLEAA  DL+  L E EK  +E   E+ +AR  +
Sbjct: 66  -----------------RMMIPDCQRRLEAAYTDLQQIL-ESEKDLEE-AEEYKEARVVL 105

Query: 212 AEIE 216
             ++
Sbjct: 126 DSVK 105

[Close]

BLAST of Spg023210 vs. ExPASy TrEMBL
Match: A0A6J1DQ83 (Tubulin-specific chaperone A OS=Momordica charantia OX=3673 GN=LOC111022807 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 2.7e-41
Identity = 99/135 (73.33%), Postives = 110/135 (81.48%), Query Frame = 0


Query: 89  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQGKRNNRTFR 148
           MATV+NLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQ         
Sbjct: 1   MATVRNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQ--------- 60

Query: 149 GMDENPHDVWSLARYYVSLWMMMVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDAR 208
                  +V + +R       MM+PDCHKRLEA+LADLKGALAELE+STQEKGPEFD+AR
Sbjct: 61  ------ENVLAESR-------MMIPDCHKRLEASLADLKGALAELEESTQEKGPEFDNAR 113

Query: 209 STIAEIESFLKTTEE 224
           STI+E+E+FLKTTEE
Sbjct: 121 STISEVENFLKTTEE 113

[Close]

BLAST of Spg023210 vs. ExPASy TrEMBL
Match: A0A6J1KV46 (Tubulin-specific chaperone A OS=Cucurbita maxima OX=3661 GN=LOC111498976 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.7e-40
Identity = 101/135 (74.81%), Postives = 105/135 (77.78%), Query Frame = 0


Query: 89  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQGKRNNRTFR 148
           MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQ         
Sbjct: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQ--------- 60

Query: 149 GMDENPHDVWSLARYYVSLWMMMVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDAR 208
                  +V + +R       MMVPDCHKRLE+ALADLKG L ELEKSTQ KGPEFDDAR
Sbjct: 61  ------ENVLAESR-------MMVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDAR 113

Query: 209 STIAEIESFLKTTEE 224
           S I EIESFLKTTEE
Sbjct: 121 SIITEIESFLKTTEE 113

[Close]

BLAST of Spg023210 vs. ExPASy TrEMBL
Match: A0A6J1H416 (Tubulin-specific chaperone A OS=Cucurbita moschata OX=3662 GN=LOC111460224 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 2.3e-40
Identity = 101/135 (74.81%), Postives = 105/135 (77.78%), Query Frame = 0


Query: 89  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQGKRNNRTFR 148
           MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQ         
Sbjct: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQ--------- 60

Query: 149 GMDENPHDVWSLARYYVSLWMMMVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDAR 208
                  +V + +R       MMVPDCHKRLEAALADLKG L ELEKSTQ KGPEF+DAR
Sbjct: 61  ------ENVLAESR-------MMVPDCHKRLEAALADLKGTLDELEKSTQVKGPEFEDAR 113

Query: 209 STIAEIESFLKTTEE 224
           S I EIESFLKTTEE
Sbjct: 121 SIITEIESFLKTTEE 113

[Close]

BLAST of Spg023210 vs. ExPASy TrEMBL
Match: A0A5D3DLX2 (Tubulin-specific chaperone A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00640 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 7.3e-39
Identity = 98/137 (71.53%), Postives = 106/137 (77.37%), Query Frame = 0


Query: 87  VSMATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQGKRNNRT 146
           + MATVKNLKIKTATCKRI+KEL SYEKEVEREA+KTADMKEKGADPYDLKQQ       
Sbjct: 126 LGMATVKNLKIKTATCKRILKELFSYEKEVEREASKTADMKEKGADPYDLKQQ------- 185

Query: 147 FRGMDENPHDVWSLARYYVSLWMMMVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDD 206
                    +V + +R       MMVPDCHKRLE ALADLK ALAELEKST+EKGPEFDD
Sbjct: 186 --------ENVLAESR-------MMVPDCHKRLEVALADLKEALAELEKSTEEKGPEFDD 240

Query: 207 ARSTIAEIESFLKTTEE 224
           ARSTI +IESFLK TEE
Sbjct: 246 ARSTINDIESFLKPTEE 240

[Close]

BLAST of Spg023210 vs. ExPASy TrEMBL
Match: A0A5A7T9L5 (Tubulin-specific chaperone A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G002620 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 7.3e-39
Identity = 98/135 (72.59%), Postives = 105/135 (77.78%), Query Frame = 0


Query: 89  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQGKRNNRTFR 148
           MATVKNLKIKTATCKRI+KEL SYEKEVEREA+KTADMKEKGADPYDLKQQ         
Sbjct: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREASKTADMKEKGADPYDLKQQ--------- 60

Query: 149 GMDENPHDVWSLARYYVSLWMMMVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDAR 208
                  +V + +R       MMVPDCHKRLE ALADLK ALAELEKST+EKGPEFDDAR
Sbjct: 61  ------ENVLAESR-------MMVPDCHKRLEVALADLKEALAELEKSTEEKGPEFDDAR 113

Query: 209 STIAEIESFLKTTEE 224
           STI +IESFLK TEE
Sbjct: 121 STINDIESFLKPTEE 113

[Close]

BLAST of Spg023210 vs. TAIR 10
Match: AT2G30410.1 (tubulin folding cofactor A (KIESEL) )

HSP 1 Score: 146.0 bits (367), Expect = 3.7e-35
Identity = 78/134 (58.21%), Postives = 98/134 (73.13%), Query Frame = 0


Query: 89  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQGKRNNRTFR 148
           MAT++NLKIKT+TCKRI+KELHSYEKEVEREAAKTADMK+KGADPYDLKQQ         
Sbjct: 1   MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQ--------- 60

Query: 149 GMDENPHDVWSLARYYVSLWMMMVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDAR 208
                  +V   +R       MM+PDCHKRLE+ALADLK  LAELE++ +++GPE +DA+
Sbjct: 61  ------ENVLGESR-------MMIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAK 112

Query: 209 STIAEIESFLKTTE 223
            T+A++E    T +
Sbjct: 121 KTVADVEKQFPTED 112

[Close]

BLAST of Spg023210 vs. TAIR 10
Match: AT2G30410.2 (tubulin folding cofactor A (KIESEL) )

HSP 1 Score: 146.0 bits (367), Expect = 3.7e-35
Identity = 78/134 (58.21%), Postives = 98/134 (73.13%), Query Frame = 0


Query: 89  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQGKRNNRTFR 148
           MAT++NLKIKT+TCKRI+KELHSYEKEVEREAAKTADMK+KGADPYDLKQQ         
Sbjct: 1   MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQ--------- 60

Query: 149 GMDENPHDVWSLARYYVSLWMMMVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDAR 208
                  +V   +R       MM+PDCHKRLE+ALADLK  LAELE++ +++GPE +DA+
Sbjct: 61  ------ENVLGESR-------MMIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAK 112

Query: 209 STIAEIESFLKTTE 223
            T+A++E    T +
Sbjct: 121 KTVADVEKQFPTED 112

The following BLAST results are available for this feature:

BLAST of Spg023210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155762.1	5.5e-41	73.33	tubulin-folding cofactor A [Momordica charantia]	[more]
XP_038907024.1	2.1e-40	74.81	tubulin-folding cofactor A [Benincasa hispida]	[more]
XP_023006149.1	3.6e-40	74.81	tubulin-folding cofactor A [Cucurbita maxima] >XP_023006150.1 tubulin-folding co...	[more]
XP_022959143.1	4.7e-40	74.81	tubulin-folding cofactor A [Cucurbita moschata] >XP_022959144.1 tubulin-folding ...	[more]
XP_023548059.1	7.9e-40	74.07	tubulin-folding cofactor A [Cucurbita pepo subsp. pepo] >XP_023548060.1 tubulin-...	[more]

BLAST of Spg023210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04350	5.2e-34	58.21	Tubulin-folding cofactor A OS=Arabidopsis thaliana OX=3702 GN=TFCA PE=1 SV=2	[more]
O75347	1.6e-06	31.45	Tubulin-specific chaperone A OS=Homo sapiens OX=9606 GN=TBCA PE=1 SV=3	[more]
Q6PEC1	2.7e-06	31.45	Tubulin-specific chaperone A OS=Rattus norvegicus OX=10116 GN=Tbca PE=1 SV=1	[more]
P80585	3.5e-06	32.26	Tubulin-specific chaperone A OS=Gallus gallus OX=9031 GN=TBCA PE=1 SV=2	[more]
P48428	7.8e-06	30.65	Tubulin-specific chaperone A OS=Mus musculus OX=10090 GN=Tbca PE=1 SV=3	[more]

BLAST of Spg023210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DQ83	2.7e-41	73.33	Tubulin-specific chaperone A OS=Momordica charantia OX=3673 GN=LOC111022807 PE=3...	[more]
A0A6J1KV46	1.7e-40	74.81	Tubulin-specific chaperone A OS=Cucurbita maxima OX=3661 GN=LOC111498976 PE=3 SV...	[more]
A0A6J1H416	2.3e-40	74.81	Tubulin-specific chaperone A OS=Cucurbita moschata OX=3662 GN=LOC111460224 PE=3 ...	[more]
A0A5D3DLX2	7.3e-39	71.53	Tubulin-specific chaperone A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7T9L5	7.3e-39	72.59	Tubulin-specific chaperone A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]

BLAST of Spg023210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30410.1	3.7e-35	58.21	tubulin folding cofactor A (KIESEL)	[more]
AT2G30410.2	3.7e-35	58.21	tubulin folding cofactor A (KIESEL)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 102..129
None	No IPR available	COILS	Coil	Coil	coord: 176..199
None	No IPR available	GENE3D	1.20.58.90		coord: 86..223 e-value: 4.0E-34 score: 119.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..148
None	No IPR available	PANTHER	PTHR21500:SF0	TUBULIN-SPECIFIC CHAPERONE A	coord: 89..215
IPR004226	Tubulin binding cofactor A	PFAM	PF02970	TBCA	coord: 95..196 e-value: 1.1E-17 score: 64.1
IPR004226	Tubulin binding cofactor A	PANTHER	PTHR21500	TUBULIN-SPECIFIC CHAPERONE A	coord: 89..215
IPR036126	Tubulin binding cofactor A superfamily	SUPERFAMILY	46988	Tubulin chaperone cofactor A	coord: 94..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg023210.1	Spg023210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007023	post-chaperonin tubulin folding pathway
biological_process	GO:0007021	tubulin complex assembly
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005874	microtubule
molecular_function	GO:0048487	beta-tubulin binding