Spg023054 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg023054
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSAM domain-containing protein
Locationscaffold12: 29868948 .. 29870363 (+)
RNA-Seq ExpressionSpg023054
SyntenySpg023054
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGCGACGGCGACGGACGGCGGCTTCTCCATCCTCCCCCGAATCCTCCCTTTCTTTCTTTCCCTTTCTTTCTCCCTCTCTTCTCTCCCCTCCTCCCACGAACTCCCTCTCTCCCTTCTGGTTCTCTTCCCCTCTCTCTCCTCTTCTCTTTCTCTCTTCTCCCTCGCCCACCCTTCCCTTTCCCTCGTCTACGAGTACGGCCTCGCCTTAGCCCACAACGAGCTCGAACACGAAGGCATCGTCTACTTCAACTATGAATTTCTCCAGAGCATCGGAATCTCCATTGCCAAGCACCGCCTCGAGATCCTCAAGCTCGCTCGCAAGGACCACGCCCTCCTCCATCCCCGTCCCATCACTCGCCTCCTCCTCGCCATCAAGCGGACCCGGTGCTGTTTTGCCAAGCTCCTCCGAATTTCACTCACCACAGCGAATACGAAGGCAAAGCCCTAGTCCTTGTCCCCAAATCCACCTACGTTGGCAAATTGCTCAAGAGGAACAAGTTATTGATTTCTAAAAAATTCTCATGCGTTTCTTAACAAATTCACTTGTGGATTTCACTTTCTGCTTTGGATTTTCCCCAATTTTGTTTGGTTTAGGGTTAATTTCATGGTGAGGGATGGGTTTTTGTGTTCTTCCACTAGTAGATGGATTAGGTTTGGGAATTGGGAATGCTTTATTTTTTTTCTTTTTTTTTAATCGTGGGTCAAGCTTTAGAAACAAGGGTCTGATTCAAAATCATGATTGGGTGGGTAAGAAGAAGAGAGGTGGAGGGCAGCGCGGCGGCTATCACCGGCGAGAAAGGGAAGGGTGGGGAAGAGAGAAGAGGAGGGAGAGGGGAAGAAAACCTGAACAGAGAGAAGGAGTTCGAAGATAGGGAGAGAGAAGGAGGGAGGAAGATTTTTTTTTTAATTTTTTTTTAATTTTTGTATTATTTTTTAATTTTTATTATTTAATTATTATTTTTTTATTATTTTAATTCAAAAATTAATATTTTAATATTTTAAACGTGCCACGTCAGCACCGTTAAAAAGATTAACGGTGGAGGGACTTAATAGAAGTATTTTCGAAACAGTAGGGACTTGATTGTTCGATTTTGAAACCTAGGGACCTATTGGAAACGAACCTGAAACATGAGGGACCAAAAAGGTATTTTACCCAAGATATTTAAATAGTATTTTTCTTAGGAGAGACATTGATTTAGTTATTGAAATCATTTAATTAGATTTTATTCAAATAATTTTCTATCTAATAAAACTATCTTTCTAAAAATAGATTATTAGAAGATTTTTACCATTGATCACTGTTCCAGCAAGAAGGCAAGGTAGGCTTACCAATGGTTTTACTGCGCTTCAACGCGTCTTACGACCTGGAGCACCAACCGCAACAGTCCTTCGCAGCAGTCCGTCTCAGTGA

mRNA sequence

ATGGACGCGACGGCGACGGACGGCGGCTTCTCCATCCTCCCCCGAATCCTCCCTTTCTTTCTTTCCCTTTCTTTCTCCCTCTCTTCTCTCCCCTCCTCCCACGAACTCCCTCTCTCCCTTCTGGTTCTCTTCCCCTCTCTCTCCTCTTCTCTTTCTCTCTTCTCCCTCGCCCACCCTTCCCTTTCCCTCGTCTACGAGTACGGCCTCGCCTTAGCCCACAACGAGCTCGAACACGAAGGCATCGTCTACTTCAACTATGAATTTCTCCAGAGCATCGGAATCTCCATTGCCAAGCACCGCCTCGAGATCCTCAAGCTCGCTCGCAAGGACCACGCCCTCCTCCATCCCCGTCCCATCACTCGCCTCCTCCTCGCCATCAAGCGGACCCGGTGCTCAAGAAGGCAAGGTAGGCTTACCAATGGTTTTACTGCGCTTCAACGCGTCTTACGACCTGGAGCACCAACCGCAACAGTCCTTCGCAGCAGTCCGTCTCAGTGA

Coding sequence (CDS)

ATGGACGCGACGGCGACGGACGGCGGCTTCTCCATCCTCCCCCGAATCCTCCCTTTCTTTCTTTCCCTTTCTTTCTCCCTCTCTTCTCTCCCCTCCTCCCACGAACTCCCTCTCTCCCTTCTGGTTCTCTTCCCCTCTCTCTCCTCTTCTCTTTCTCTCTTCTCCCTCGCCCACCCTTCCCTTTCCCTCGTCTACGAGTACGGCCTCGCCTTAGCCCACAACGAGCTCGAACACGAAGGCATCGTCTACTTCAACTATGAATTTCTCCAGAGCATCGGAATCTCCATTGCCAAGCACCGCCTCGAGATCCTCAAGCTCGCTCGCAAGGACCACGCCCTCCTCCATCCCCGTCCCATCACTCGCCTCCTCCTCGCCATCAAGCGGACCCGGTGCTCAAGAAGGCAAGGTAGGCTTACCAATGGTTTTACTGCGCTTCAACGCGTCTTACGACCTGGAGCACCAACCGCAACAGTCCTTCGCAGCAGTCCGTCTCAGTGA

Protein sequence

MDATATDGGFSILPRILPFFLSLSFSLSSLPSSHELPLSLLVLFPSLSSSLSLFSLAHPSLSLVYEYGLALAHNELEHEGIVYFNYEFLQSIGISIAKHRLEILKLARKDHALLHPRPITRLLLAIKRTRCSRRQGRLTNGFTALQRVLRPGAPTATVLRSSPSQ
Homology
BLAST of Spg023054 vs. NCBI nr
Match: XP_038900622.1 (uncharacterized protein LOC120087790 [Benincasa hispida])

HSP 1 Score: 119.0 bits (297), Expect = 3.8e-23
Identity = 67/86 (77.91%), Postives = 74/86 (86.05%), Query Frame = 0

Query: 58  HPSLSLVYEYGLALAHNELEHEGIVYFNYEFLQSIGISIAKHRLEILKLARKDHALLHPR 117
           HP  SLVYEYGLALA+NELEHE I+YFN+EFLQSIGISIAKHRLEILKLARKD+A LHPR
Sbjct: 13  HP--SLVYEYGLALANNELEHEDILYFNHEFLQSIGISIAKHRLEILKLARKDNA-LHPR 72

Query: 118 PITRLLLAIKRTRCSRRQGRLTNGFT 144
           PITRLLLA+K+T+  RR   L   FT
Sbjct: 73  PITRLLLALKKTK--RRFSNLIRNFT 93

BLAST of Spg023054 vs. NCBI nr
Match: XP_022948497.1 (uncharacterized protein LOC111452156 [Cucurbita moschata])

HSP 1 Score: 115.9 bits (289), Expect = 3.2e-22
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = 0

Query: 62  SLVYEYGLALAHNELEHEGIVYFNYEFLQSIGISIAKHRLEILKLARKDHALLHPRPITR 121
           SLVYEYGLAL+HNELE E IVYFN+EFLQSIGISIAKHRLEILKLARKD A LHPRPITR
Sbjct: 15  SLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLARKDGA-LHPRPITR 74

Query: 122 LLLAIKRTR 131
           LLLAIKRT+
Sbjct: 75  LLLAIKRTK 82

BLAST of Spg023054 vs. NCBI nr
Match: XP_023525324.1 (uncharacterized protein LOC111788960 [Cucurbita pepo subsp. pepo] >KAG7036525.1 hypothetical protein SDJN02_00143, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115.9 bits (289), Expect = 3.2e-22
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = 0

Query: 62  SLVYEYGLALAHNELEHEGIVYFNYEFLQSIGISIAKHRLEILKLARKDHALLHPRPITR 121
           SLVYEYGLAL+HNELE E IVYFN+EFLQSIGISIAKHRLEILKLARKD A LHPRPITR
Sbjct: 15  SLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLARKDGA-LHPRPITR 74

Query: 122 LLLAIKRTR 131
           LLLAIKRT+
Sbjct: 75  LLLAIKRTK 82

BLAST of Spg023054 vs. NCBI nr
Match: XP_022998747.1 (uncharacterized protein LOC111493318 [Cucurbita maxima])

HSP 1 Score: 115.9 bits (289), Expect = 3.2e-22
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = 0

Query: 62  SLVYEYGLALAHNELEHEGIVYFNYEFLQSIGISIAKHRLEILKLARKDHALLHPRPITR 121
           SLVYEYGLAL+HNELE E IVYFN+EFLQSIGISIAKHRLEILKLARKD A LHPRPITR
Sbjct: 15  SLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLARKDGA-LHPRPITR 74

Query: 122 LLLAIKRTR 131
           LLLAIKRT+
Sbjct: 75  LLLAIKRTK 82

BLAST of Spg023054 vs. NCBI nr
Match: KAG6606819.1 (hypothetical protein SDJN03_00161, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.8 bits (281), Expect = 2.7e-21
Identity = 69/98 (70.41%), Postives = 74/98 (75.51%), Query Frame = 0

Query: 33  SHELPLSLLVLFPSLSSSLSLFSLAHPSLSLVYEYGLALAHNELEHEGIVYFNYEFLQSI 92
           SH  P S +  F  LS +           SLVYEYGLAL+HNELE E IVYFN+EFLQSI
Sbjct: 25  SHFQPFSAMDWFSWLSKTTL-------DPSLVYEYGLALSHNELEQEDIVYFNHEFLQSI 84

Query: 93  GISIAKHRLEILKLARKDHALLHPRPITRLLLAIKRTR 131
           GISIAKHRLEILKLARKD A LHPRPITRLLLAIKRT+
Sbjct: 85  GISIAKHRLEILKLARKDGA-LHPRPITRLLLAIKRTK 114

BLAST of Spg023054 vs. ExPASy TrEMBL
Match: A0A6J1K8U0 (uncharacterized protein LOC111493318 OS=Cucurbita maxima OX=3661 GN=LOC111493318 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.6e-22
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = 0

Query: 62  SLVYEYGLALAHNELEHEGIVYFNYEFLQSIGISIAKHRLEILKLARKDHALLHPRPITR 121
           SLVYEYGLAL+HNELE E IVYFN+EFLQSIGISIAKHRLEILKLARKD A LHPRPITR
Sbjct: 15  SLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLARKDGA-LHPRPITR 74

Query: 122 LLLAIKRTR 131
           LLLAIKRT+
Sbjct: 75  LLLAIKRTK 82

BLAST of Spg023054 vs. ExPASy TrEMBL
Match: A0A6J1G9F1 (uncharacterized protein LOC111452156 OS=Cucurbita moschata OX=3662 GN=LOC111452156 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.6e-22
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = 0

Query: 62  SLVYEYGLALAHNELEHEGIVYFNYEFLQSIGISIAKHRLEILKLARKDHALLHPRPITR 121
           SLVYEYGLAL+HNELE E IVYFN+EFLQSIGISIAKHRLEILKLARKD A LHPRPITR
Sbjct: 15  SLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLARKDGA-LHPRPITR 74

Query: 122 LLLAIKRTR 131
           LLLAIKRT+
Sbjct: 75  LLLAIKRTK 82

BLAST of Spg023054 vs. ExPASy TrEMBL
Match: A0A6J1DIZ2 (uncharacterized protein LOC111020921 OS=Momordica charantia OX=3673 GN=LOC111020921 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.7e-21
Identity = 58/69 (84.06%), Postives = 65/69 (94.20%), Query Frame = 0

Query: 62  SLVYEYGLALAHNELEHEGIVYFNYEFLQSIGISIAKHRLEILKLARKDHALLHPRPITR 121
           SLVYEYGLA AHNELE + IVYFN+EFLQS+GISIAKHRLEILKLARK++A LHPRP+TR
Sbjct: 46  SLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLARKENA-LHPRPVTR 105

Query: 122 LLLAIKRTR 131
           LLLAIKRT+
Sbjct: 106 LLLAIKRTK 113

BLAST of Spg023054 vs. ExPASy TrEMBL
Match: A0A0A0KVK9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G006310 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.9e-21
Identity = 72/114 (63.16%), Postives = 82/114 (71.93%), Query Frame = 0

Query: 49  SSLSLFSLAHPSLSLVYEYGLALAHNELEHEGIVYFNYEFLQSIGISIAKHRLEILKLAR 108
           S LS  SL HP  SLVYEYGLALA+NELEHE I+YFN+EFLQSIGISIAKHRLEILKL  
Sbjct: 14  SWLSRTSL-HP--SLVYEYGLALANNELEHEDILYFNHEFLQSIGISIAKHRLEILKLVH 73

Query: 109 KDHALLHPRPITRLLLAIKRTRCSRRQGRLTNGFTALQRVLRPGAPTATVLRSS 163
           K++A LHPRPITR+LLA+K+T+  RR   L   FT     L        V +SS
Sbjct: 74  KENA-LHPRPITRILLALKKTK--RRFANLIRNFTHHDDQLEESKALVLVPKSS 121

BLAST of Spg023054 vs. ExPASy TrEMBL
Match: A0A5A7TQT5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G002020 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.0e-21
Identity = 72/114 (63.16%), Postives = 83/114 (72.81%), Query Frame = 0

Query: 49  SSLSLFSLAHPSLSLVYEYGLALAHNELEHEGIVYFNYEFLQSIGISIAKHRLEILKLAR 108
           S LS  SL HP  SLVYEYGLALA+NELE+E I+YFN+EFLQSIGISIAKHRLEILKL R
Sbjct: 14  SWLSKTSL-HP--SLVYEYGLALANNELEYEDILYFNHEFLQSIGISIAKHRLEILKLVR 73

Query: 109 KDHALLHPRPITRLLLAIKRTRCSRRQGRLTNGFTALQRVLRPGAPTATVLRSS 163
           K++A LHPRPITR+LLA+K+T+  RR   L   FT     L        V +SS
Sbjct: 74  KENA-LHPRPITRILLALKKTK--RRFANLIRNFTHHDDQLEESKALVLVPKSS 121

BLAST of Spg023054 vs. TAIR 10
Match: AT1G80520.1 (Sterile alpha motif (SAM) domain-containing protein )

HSP 1 Score: 87.8 bits (216), Expect = 8.8e-18
Identity = 49/80 (61.25%), Postives = 62/80 (77.50%), Query Frame = 0

Query: 52  SLFSLAHPSLSLVYEYGLALAHNELEHEGIVYFNYEFLQSIGISIAKHRLEILKLARKDH 111
           S  S  +   SL+YEYGL+ ++NELE+E I YFN+EFLQS+GISIAKHRLEILKLAR+D 
Sbjct: 5   SWLSRTNLEASLIYEYGLSFSNNELEYEDIAYFNHEFLQSMGISIAKHRLEILKLARRDR 64

Query: 112 --ALLHPRPITRLLLAIKRT 130
             + L  R I R+L+AIK+T
Sbjct: 65  KPSPLTARSIFRVLIAIKKT 84

BLAST of Spg023054 vs. TAIR 10
Match: AT1G15760.1 (Sterile alpha motif (SAM) domain-containing protein )

HSP 1 Score: 86.3 bits (212), Expect = 2.6e-17
Identity = 46/72 (63.89%), Postives = 58/72 (80.56%), Query Frame = 0

Query: 62  SLVYEYGLALAHNELEHEGIVYFNYEFLQSIGISIAKHRLEILKLARKDHALLHP---RP 121
           SL++EYGL+ + NELEHE I YF++EFLQS+GISIAKHRLEILKLAR+D     P   R 
Sbjct: 17  SLIHEYGLSFSQNELEHEDISYFDHEFLQSMGISIAKHRLEILKLARRDRKNSPPLTSRS 76

Query: 122 ITRLLLAIKRTR 131
           I+R++ AIK+TR
Sbjct: 77  ISRVVTAIKKTR 88

BLAST of Spg023054 vs. TAIR 10
Match: AT2G12462.1 (BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT1G15760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 3.7e-08
Identity = 36/96 (37.50%), Postives = 60/96 (62.50%), Query Frame = 0

Query: 62  SLVYEYGLALAHNELEHEGIVYFNYEFLQSIGISIAKHRLEILKLARKDHALL---HPRP 121
           +L YEYGL  A  +L+ E I  FN+ FL+ +G+++ KHR+EILKL++++   L   + RP
Sbjct: 15  TLSYEYGLIFAQKKLQGEDIALFNHNFLRRLGVTVTKHRVEILKLSKRETQALSSYNHRP 74

Query: 122 ITRLLLA--IKRTRC--SRRQGRLTNGFTALQRVLR 151
           ++  L++  IK T+   +R    L+ G TA+   L+
Sbjct: 75  VSAKLISVVIKATKSVGNRLNKWLSLGGTAVVEPLK 110

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038900622.13.8e-2377.91uncharacterized protein LOC120087790 [Benincasa hispida][more]
XP_022948497.13.2e-2289.86uncharacterized protein LOC111452156 [Cucurbita moschata][more]
XP_023525324.13.2e-2289.86uncharacterized protein LOC111788960 [Cucurbita pepo subsp. pepo] >KAG7036525.1 ... [more]
XP_022998747.13.2e-2289.86uncharacterized protein LOC111493318 [Cucurbita maxima][more]
KAG6606819.12.7e-2170.41hypothetical protein SDJN03_00161, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1K8U01.6e-2289.86uncharacterized protein LOC111493318 OS=Cucurbita maxima OX=3661 GN=LOC111493318... [more]
A0A6J1G9F11.6e-2289.86uncharacterized protein LOC111452156 OS=Cucurbita moschata OX=3662 GN=LOC1114521... [more]
A0A6J1DIZ21.7e-2184.06uncharacterized protein LOC111020921 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A0A0KVK93.9e-2163.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G006310 PE=4 SV=1[more]
A0A5A7TQT55.0e-2163.16Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
AT1G80520.18.8e-1861.25Sterile alpha motif (SAM) domain-containing protein [more]
AT1G15760.12.6e-1763.89Sterile alpha motif (SAM) domain-containing protein [more]
AT2G12462.13.7e-0837.50BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-con... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33915OSJNBA0033G05.11 PROTEINcoord: 62..132
NoneNo IPR availablePANTHERPTHR33915:SF1OSJNBA0033G05.11 PROTEINcoord: 62..132

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg023054.1Spg023054.1mRNA