Spg022987 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg022987
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold12: 31384572 .. 31386463 (-)
RNA-Seq Expression	Spg022987
Synteny	Spg022987

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCCCCCATCAGCTCCTCAGTTGAAGAAATCGAGCCCTCAATGCAAACCCTCAAAGGTTTCTTCTTCTGATTGGCTGAAAGAGGTTTCGAAACCTTCTTCGTTTCCTCGACATATAAGCACACAACAATCAGCTCAGTCAGCCTCTACTCGGTCGAAAGCTCAAGGTAAACCTCCCAGACCAAATACTCGTGTAGGAACACTCTAGAGAGTGGGAGGAAGAACTCAGAAAAGTAGCCGAGAAAAGTCGTCGGGCTATTAAAGACGTTGCCATGGAAACCAAAGAATAAGAGGAGAAGGAAACACCCTTGGTCCTCAAGCCAAAAGCAATACGACTTAAGGAGAGGGAAGAAGCAGAGAAGCGAAAGGTGGAAGTGAAGTACCTCAGAAGAAGAAGACGGGATGAAGCTGAGCCATGCATCAAGATTGCGGTTGCAAATGTGGAGCAACCTGAAAATCTGTCTGCAGGTCGACCTGAGATTGCGACCGCAAATACAGTCCAGAAAAATGAGGCAGTGCCAGTTCCTGAGGCACTTACCAAGCAAGATGCGCCCGCATCTGGGGCGCAGATGCAGGTTCAAGCTTCAACTTCAACCATGGATCTGTCCAAGCTTAAGGGAAAAATATCAACACGATGGGGTCCAAAGTTGCAGTAGCAGGTGGAGCAAAGCAGAATTGTTGCAGATGCTCTATGGTTCGTAAAGGCCATGGCATGCCAGATCAGAGATGAGCAACTGGTTGAAGAAAGAAGAAGAAAGAAAGAGGCCAAAAAAGAGGCTAAGAGGAAGAAAATAGAAGAAGAAGAGTAAGGTGCTCTGGATTTTGCAGCTGCTTGTTTAAAGGACTTAATGGATACCATTGAGAAAGAAGAAGAAGAACTTGTGCCCGCTTCTGAGGGCCAAACAAAAGAATTTGCAGGGGAGTTTGAGGTCGCAAATGTGGCGCAAACAGAGTAGAAATATTAGACTGCACGAGTTTGTGAGGTGCAATCTGATACACCATCCCCACCACCACCAAAGGAGGAAGAAAATGTGCTTGAGGACCTATTCGAGTACCATAATGAAGCAATGTTCAAGGACCTGTTCGAACATGAGCAAGAGAAGGAGCAGCAGGCTCCAATTGATGAAGAAGAGGTCCGTGAGATTTCTAGGGACCAAATGCCCAAGAGGGGCAGGGAAGAAACAGACAGTGAGGCTGAAGGGAAGGCTAAGAAGAAGAAAAGAGCTGAGATTTCCCTGAGGAGGCCCAACACTAGAGGAATGACTTTTGTGCTCCCCCAAGCCAGGATGCCATCACCGCCACCTGTAAGGAGAGAAGCATCCATTCCTCAGGCAAAGAAGATCCAACAAAGCAGCCGAGAGTGGAAGTTCGAGTGGAGGTCCATCTAGACACTCAGACCTGATTGGCCACTATGAAGAAACGACTTCTGATGTGTGAGAAGGCATTCTCCACCAAGACAGGCCCTCTCCCAACATTCATAGAAAATATTCTACGCAGGGATGGCTGGGATCGACTATGCAAGGAGCCAAAGGTAGCATCTATCCCACTGGTACGTGAGTTGCTCAAATAGGGGAAGAGATGCAGACATCTATGCTCCTACGTGGATGAGTGGTGGAGTTCTCGACGAGACATGTCAATCAGATTTTTCGATTGCCATCCCTCAGATGCCCAGCTGGCAAGAAGGCCATTGAAGAACAAACATTTGAGCAGCTGGCAGAGGCCCTAGCTATTGTGGCCCACGAGGGAGTTAAGTGGCAAGAGTCCAAGACCGGAATCAGGACTCTACTATCAGGAGATTTGAAGCCAGAGGCAGCAGTCTGGCTGTATGTGATCAAGAACAGGATCATGCAAACCACACATGACACCACCATATCTCAAAAACGTGTCTGA

mRNA sequence

ATGAAGCCCCCATCAGCTCCTCAGTTGAAGAAATCGAGCCCTCAATGCAAACCCTCAAAGGTTTCTTCTTCTGATTGGCTGAAAGAGGTTTCGAAACCTTCTTCGTTTCCTCGACATATAAGCACACAACAATCAGCTCAGTCAGCCTCTACTCGGTCGAAAGCTCAAGAGGAGAAGGAAACACCCTTGGTCCTCAAGCCAAAAGCAATACGACTTAAGGAGAGGGAAGAAGCAGAGAAGCGAAAGGTGGAAGTGAAGTACCTCAGAAGAAGAAGACGGGATGAAGCTGAGCCATGCATCAAGATTGCGGTTGCAAATGTGGAGCAACCTGAAAATCTGTCTGCAGGTCGACCTGAGATTGCGACCGCAAATACAGTCCAGAAAAATGAGGCAGTGCCAGTTCCTGAGGCACTTACCAAGCAAGATGCGCCCGCATCTGGGGCGCAGATGCAGACTGCACGAGTTTGTGAGGTGCAATCTGATACACCATCCCCACCACCACCAAAGGAGGAAGAAAATGTGCTTGAGGACCTATTCGAGTACCATAATGAAGCAATGTTCAAGGACCTGTTCGAACATGAGCAAGAGAAGGAGCAGCAGGCTCCAATTGATGAAGAAGAGGTCCGTGAGATTTCTAGGGACCAAATGCCCAAGAGGGGCAGGGAAGAAACAGACAGTGAGGCTGAAGGGAAGGCTAAGAAGAAGAAAAGAGCTGAGATTTCCCTGAGGAGGCCCAACACTAGAGGAATGACTTTTGTGCTCCCCCAAGCCAGGATGCCATCACCGCCACCTGTAAGGAGAGAAGCATCCATTCCTCAGGCAAAGAAGATCCAACAAAGCAGCCGAGAGTGGAAGCCCTCTCCCAACATTCATAGAAAATATTCTACGCAGGGATGGCTGGGATCGACTATGCAAGGAGCCAAAGGTAGCATCTATCCCACTGGTACATGCCCAGCTGGCAAGAAGGCCATTGAAGAACAAACATTTGAGCAGCTGGCAGAGGCCCTAGCTATTGTGGCCCACGAGGGAGTTAAGTGGCAAGAGTCCAAGACCGGAATCAGGACTCTACTATCAGGAGATTTGAAGCCAGAGGCAGCAGTCTGGCTGTATGTGATCAAGAACAGGATCATGCAAACCACACATGACACCACCATATCTCAAAAACGTGTCTGA

Coding sequence (CDS)

ATGAAGCCCCCATCAGCTCCTCAGTTGAAGAAATCGAGCCCTCAATGCAAACCCTCAAAGGTTTCTTCTTCTGATTGGCTGAAAGAGGTTTCGAAACCTTCTTCGTTTCCTCGACATATAAGCACACAACAATCAGCTCAGTCAGCCTCTACTCGGTCGAAAGCTCAAGAGGAGAAGGAAACACCCTTGGTCCTCAAGCCAAAAGCAATACGACTTAAGGAGAGGGAAGAAGCAGAGAAGCGAAAGGTGGAAGTGAAGTACCTCAGAAGAAGAAGACGGGATGAAGCTGAGCCATGCATCAAGATTGCGGTTGCAAATGTGGAGCAACCTGAAAATCTGTCTGCAGGTCGACCTGAGATTGCGACCGCAAATACAGTCCAGAAAAATGAGGCAGTGCCAGTTCCTGAGGCACTTACCAAGCAAGATGCGCCCGCATCTGGGGCGCAGATGCAGACTGCACGAGTTTGTGAGGTGCAATCTGATACACCATCCCCACCACCACCAAAGGAGGAAGAAAATGTGCTTGAGGACCTATTCGAGTACCATAATGAAGCAATGTTCAAGGACCTGTTCGAACATGAGCAAGAGAAGGAGCAGCAGGCTCCAATTGATGAAGAAGAGGTCCGTGAGATTTCTAGGGACCAAATGCCCAAGAGGGGCAGGGAAGAAACAGACAGTGAGGCTGAAGGGAAGGCTAAGAAGAAGAAAAGAGCTGAGATTTCCCTGAGGAGGCCCAACACTAGAGGAATGACTTTTGTGCTCCCCCAAGCCAGGATGCCATCACCGCCACCTGTAAGGAGAGAAGCATCCATTCCTCAGGCAAAGAAGATCCAACAAAGCAGCCGAGAGTGGAAGCCCTCTCCCAACATTCATAGAAAATATTCTACGCAGGGATGGCTGGGATCGACTATGCAAGGAGCCAAAGGTAGCATCTATCCCACTGGTACATGCCCAGCTGGCAAGAAGGCCATTGAAGAACAAACATTTGAGCAGCTGGCAGAGGCCCTAGCTATTGTGGCCCACGAGGGAGTTAAGTGGCAAGAGTCCAAGACCGGAATCAGGACTCTACTATCAGGAGATTTGAAGCCAGAGGCAGCAGTCTGGCTGTATGTGATCAAGAACAGGATCATGCAAACCACACATGACACCACCATATCTCAAAAACGTGTCTGA

Protein sequence

MKPPSAPQLKKSSPQCKPSKVSSSDWLKEVSKPSSFPRHISTQQSAQSASTRSKAQEEKETPLVLKPKAIRLKEREEAEKRKVEVKYLRRRRRDEAEPCIKIAVANVEQPENLSAGRPEIATANTVQKNEAVPVPEALTKQDAPASGAQMQTARVCEVQSDTPSPPPPKEEENVLEDLFEYHNEAMFKDLFEHEQEKEQQAPIDEEEVREISRDQMPKRGREETDSEAEGKAKKKKRAEISLRRPNTRGMTFVLPQARMPSPPPVRREASIPQAKKIQQSSREWKPSPNIHRKYSTQGWLGSTMQGAKGSIYPTGTCPAGKKAIEEQTFEQLAEALAIVAHEGVKWQESKTGIRTLLSGDLKPEAAVWLYVIKNRIMQTTHDTTISQKRV

Homology

[Close]

BLAST of Spg022987 vs. NCBI nr
Match: XP_038904385.1 (uncharacterized protein LOC120090747 [Benincasa hispida])

HSP 1 Score: 68.2 bits (165), Expect = 1.8e-07
Identity = 30/72 (41.67%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 319 AGKKAIEEQTFEQLAEALAIVAHEGVKWQESKTGIRTLLSGDLKPEAAVWLYVIKNRIMQ 378
           +G K I++   E++ +AL  +   G +W  S  GI+TL S  L PEA +W+Y++K RI+ 
Sbjct: 258 SGNKIIDDPQEEKMEDALRTLTQSGTQWSVSLKGIKTLASSKLLPEARLWVYLVKRRIIP 317

Query: 379 TTHDTTISQKRV 391
           T+HD T+S+ RV
Sbjct: 318 TSHDKTVSRDRV 329

[Close]

BLAST of Spg022987 vs. NCBI nr
Match: PON62892.1 (hypothetical protein PanWU01x14_135680 [Parasponia andersonii])

HSP 1 Score: 55.8 bits (133), Expect = 9.4e-04
Identity = 27/67 (40.30%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 324 IEEQTFEQLAEALAIVAHEGVKWQESKTGIRTLLSGDLKPEAAVWLYVIKNRIMQTTHDT 383
           +E  T  +LA  L  VA  G +W  S  G  T L   L P A VW + +K+R++ TTH  
Sbjct: 40  VEAITEPELATVLETVAIAGAEWNVSSQGAYTCLRSSLNPPAKVWYHFLKSRLLPTTHGK 99

Query: 384 TISQKRV 391
           T+S++RV
Sbjct: 100 TVSKERV 106

[Close]

BLAST of Spg022987 vs. ExPASy TrEMBL
Match: A0A2P5CPE8 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_135680 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.6e-04
Identity = 27/67 (40.30%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 324 IEEQTFEQLAEALAIVAHEGVKWQESKTGIRTLLSGDLKPEAAVWLYVIKNRIMQTTHDT 383
           +E  T  +LA  L  VA  G +W  S  G  T L   L P A VW + +K+R++ TTH  
Sbjct: 40  VEAITEPELATVLETVAIAGAEWNVSSQGAYTCLRSSLNPPAKVWYHFLKSRLLPTTHGK 99

Query: 384 TISQKRV 391
           T+S++RV
Sbjct: 100 TVSKERV 106

[Close]

BLAST of Spg022987 vs. ExPASy TrEMBL
Match: A0A2P5BNT0 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_223230 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.9e-04
Identity = 25/67 (37.31%), Postives = 39/67 (58.21%), Query Frame = 0


Query: 324 IEEQTFEQLAEALAIVAHEGVKWQESKTGIRTLLSGDLKPEAAVWLYVIKNRIMQTTHDT 383
           +E+ T  +LA  L  VA  G +W  S  G+ T L   L P A +W + +K+R++ TTH  
Sbjct: 50  VEDITEPELAMVLETVAIAGAEWNVSSQGVYTCLRSSLNPPAKIWYHFLKSRLLPTTHGK 109

Query: 384 TISQKRV 391
            +S++RV
Sbjct: 110 IVSKERV 116

The following BLAST results are available for this feature:

BLAST of Spg022987 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904385.1	1.8e-07	41.67	uncharacterized protein LOC120090747 [Benincasa hispida]	[more]
PON62892.1	9.4e-04	40.30	hypothetical protein PanWU01x14_135680 [Parasponia andersonii]	[more]

BLAST of Spg022987 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg022987 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5CPE8	4.6e-04	40.30	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_135680 PE...	[more]
A0A2P5BNT0	5.9e-04	37.31	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]

BLAST of Spg022987 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..236
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 273..290
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..240
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 254..290
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..159
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg022987.1	Spg022987.1	mRNA