Spg022971 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg022971
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Mediator of RNA polymerase II transcription subunit 21
Location	scaffold12: 30836402 .. 30839763 (+)
RNA-Seq Expression	Spg022971
Synteny	Spg022971

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCCTCCCTTTCAGCAGTTCAGTGTCGCCGCATTGTCACTTCGGTTTAGTGTCACAACCGCCCCCAGATTTCTTCTGCTCGTGCCACCGCAACCTCCTCCTAGTGATTTGCATCGATCTTCCATTCTCTTGTTGCTATTGGTATTCTCTTAATCTCCATGTGCATCTATATTTTCTATTTTGTTTTTTCACATGAAAAAACTTAAATTAGGACTTGCCCAATGCCCATTAATTGATGTGGTAAAGACACTTTTATATGTAGTGTATATAGATATAGATAAGACTTGTAAGTGACACATAGATTCTCCCTTATAGCCACTTTTATTGCAATATATATATATATAGATATAGATAGTATAGATTTTATATAAAATATAGATTATAAATGGCACTGGTGTAGTATTGACACTTTTTTCGTTGCGTTATGCCGCTCAGTTTTGTGAAAACAAAAATTGGTTTATCCGTTAACGATAAATAAATTTGGACTAAATTATCAAAAATACCTTGAACTATGGGGTTGATTTTAATTACACTCTCGAACTTTCAAGAGTTTCATTTTAGCCCTTGAAGTTTGAAATTTGTTTCAAAATGACCTTTCAAGGTTTTCTTCTTTTTTTTTTTCCATTCCATTCATGGACGGAAAATGACGTGTTTGCATATGAATTGTTACTTGTGTGAATAGATTTGAGCACATGCACGGAAAAAACAATAAAAACATATGCAACCACATCATTTTTTGTCAATAAATTTAATGAAAAATGCCTCACAGGGTCGTTTTGAAACAATGTTCAAACTTCAAGGGTTAAAATGAAGCTTTTGAAAATTTAGGGGTATAATTGAAACCAACCCACTATGGGTATTTTTGATAATTTAACCATAAATTTAACATCTTACAAGTACACCATTACAATTTTGATTTCGGTCCTTCAATTTTGTTTCCTTGGATTTGATGCGATTTCATCATCTACTTGACAACCCAGACACAAGAACTGGATCAAAACCATCAAACCTATTTCTTCATCTCCTAGTCTCTTAAATTGTAACAAATCGAATCGAGAACTGGCATTTCGATGTATCTCATTCGGTTTTTCTTCTTTTTAATTAGTTGTTTATGTTGTAGCATGTCAGAAGCGAAGTCTTTTAGGAGTATAAATTTTCCTTGCCAAGTCCTTGATGCAATTGCATACTTAGTCTGGATTACATTGAATGAAATAGGTCGCACTCCCACTCAGTCAGTTTCTAAAAGTGATTTGCTGATTTTAATTGCTGTGTTAAGTCGTTTGCTTGCTGAATCATCATAGGAATAAGGTTCAAGATGGACATAATTTCCCAACTACAGGAACAAGTCAACACCATTGCTGCTTTAGCTTTCAACACATTTGGGACATTACAAAGAGATGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCGCCGCCTCACGAACCTACAGAGGACAATGCAAATATCGCAGAGCAACCCAAACTAATGAGTGCTGCTTTGGTGAAAGCTGCTAAGCAGGTGTGAATTATTTATTCGGTGTGATTGAAGTGTTTGCTATTGCTCATGCAAAAAGTGTCGTCCTTTCCCTGTGATACTTAATAGTTTATTGGTTCTTGTTGTACTTTCGGGGTGGAAAATATGAATATGTGATGCATTTGCTTCTTGTTAATTACTTCTTCACGGGTTGAGCCATCAAGAAAAGTATTTGCTTCTTGTTTTGGGGGAAAATTTATATTGCTATTTTTTTTTTCAAATGTCAGTATCCTAGATTAACTTTATATGCATTTTATCTACTGGATAAGTAACCAAGAATCACCCTTGTGTTGAGGTTGGAAGAGACACATTTCATTCATCATTGAATGCTCGTTTGTTGGATCAAGTTAATGCCAAACCTAAACAACTTGTGTTTTCTGAGGATGAAACGGGACTATCATTTTCTGCTTTTCAGCTCTCTCATAATTTTTACTAGATTCTTGATGGGTGAGTAAAATATCAATGCAACAGATTTCCTGTACTTGTTTGAGATGCATACACGTTCTAATGCCATGATTTATGATAAACCCATCAAATGAACCAAATTTGGTATTGGAAAGTTGGAAACTTCAATTTATTTTTTCCTCCCAACCTTGGATACTACTTGGGCAACTATGGCATGTTGGATCCAATAAACCAAAGTGTTATGGAAAAATTTTAAATCATTCTTTGTTTATAACTGCCTGTTATGTTTGGCCCCACTTTTAAGAGCTATATTATTTGTGTTGATATTTGGAATCTGCTATTCAACCCTGTATTTGACTAAAATTTGGATTTTCTTTTATTTAGAAATTTTGCTGAGAGATTTTTTATTTTCATAAATTTCCAGCGATGGAGTTGAAAGTAGCAATGGATTAAGGTTTGTTCTCTTGAAACAAAATTTCCATAGAATATATGGAATTTATAAAATTGACTGAGTCCGTCCACATTACTTTTGGGAAAATCCCAATGTAGCAGGTAGTAGGGTACTAGAAATGTTTCAAAGTTTTCCAGTTCTGTTGCACTTTTAATGTTTTCTAGATGTGATTCTACAAGGAGCCAGATTTGTTCCATATCTTTTCTCATTTCCTGTCGCTTTTTACTCTCTCCTCTCCAACTGGCATATTATTAGCTTTCTGAACAAAAGAAAGGGCTGGGACCTTGCTTCATTTATATGCAATCCAATTGAACATATGTACCTTTTTAAAAATTATTATCGTTATTACTTTTTGGCGCAGTTTGATGTATTGGTTGCAGCATTGCCTTTATCTGATGGGGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGTATAAATCTTCTCATATTCTGATGTTGATATAAGACCCAAGAATTCTTGTATCATTTAGTTCTCTCCTTAATACGTTGGAAACCATTTGTCCAGGCTGAGAACGATGCTGTAGGTCAAGAACTTCAAAAGCAGCTAGAAGCAGCAGGTGTTATCTTGACTTATTGTTAGCCTTTATATTTACAACATGCCTAATTCTAAATTATTGGCCAACCGTGACTTTAAAAGCATACTAAAATAGATTATTTCCTATTGGAGATTGTTACCGTAGTTTTGGACCAGCATAAGTTCACTAAATCATTGTCTGGCTTGTGTCTTACAACGGTTTAATTAATTTTATTTAAGAATTTAAGCCCTAAATTTTTCATGTTCTCTCCATTCTATTGAATATGCTACTGATATTTAGCCACAACTACACAACTAACAATCTTAATGGAACTGTTTGTTGCAGAGAAAGAATTAACACAGGTTCAGGAGCTTTTCAGCCAAGTTGCAGATAATTGCTTGAACTTGAAGAAAGCAGATTGA

mRNA sequence

TCTCCTCCCTTTCAGCAGTTCAGTGTCGCCGCATTGTCACTTCGGTTTAGTGTCACAACCGCCCCCAGATTTCTTCTGCTCGTGCCACCGCAACCTCCTCCTAGAATAAGGTTCAAGATGGACATAATTTCCCAACTACAGGAACAAGTCAACACCATTGCTGCTTTAGCTTTCAACACATTTGGGACATTACAAAGAGATGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCGCCGCCTCACGAACCTACAGAGGACAATGCAAATATCGCAGAGCAACCCAAACTAATGAGTGCTGCTTTGGTGAAAGCTGCTAAGCAGTTTGATGTATTGGTTGCAGCATTGCCTTTATCTGATGGGGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGCTGTAGGTCAAGAACTTCAAAAGCAGCTAGAAGCAGCAGCCACAACTACACAACTAACAATCTTAATGGAACTGTTTGTTGCAGAGAAAGAATTAACACAGGTTCAGGAGCTTTTCAGCCAAGTTGCAGATAATTGCTTGAACTTGAAGAAAGCAGATTGA

Coding sequence (CDS)

TCTCCTCCCTTTCAGCAGTTCAGTGTCGCCGCATTGTCACTTCGGTTTAGTGTCACAACCGCCCCCAGATTTCTTCTGCTCGTGCCACCGCAACCTCCTCCTAGAATAAGGTTCAAGATGGACATAATTTCCCAACTACAGGAACAAGTCAACACCATTGCTGCTTTAGCTTTCAACACATTTGGGACATTACAAAGAGATGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCGCCGCCTCACGAACCTACAGAGGACAATGCAAATATCGCAGAGCAACCCAAACTAATGAGTGCTGCTTTGGTGAAAGCTGCTAAGCAGTTTGATGTATTGGTTGCAGCATTGCCTTTATCTGATGGGGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGCTGTAGGTCAAGAACTTCAAAAGCAGCTAGAAGCAGCAGCCACAACTACACAACTAACAATCTTAATGGAACTGTTTGTTGCAGAGAAAGAATTAACACAGGTTCAGGAGCTTTTCAGCCAAGTTGCAGATAATTGCTTGAACTTGAAGAAAGCAGATTGA

Protein sequence

SPPFQQFSVAALSLRFSVTTAPRFLLLVPPQPPPRIRFKMDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAATTTQLTILMELFVAEKELTQVQELFSQVADNCLNLKKAD

Homology

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BLAST of Spg022971 vs. NCBI nr
Match: XP_022958635.1 (mediator of RNA polymerase II transcription subunit 21 [Cucurbita moschata] >XP_022958636.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita moschata] >XP_022996209.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita maxima] >XP_022996211.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita maxima] >KAG7035787.1 Mediator of RNA polymerase II transcription subunit 21 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 245.7 bits (626), Expect = 3.2e-61
Identity = 135/153 (88.24%), Postives = 136/153 (88.89%), Query Frame = 0


Query: 40  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 99
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTED+AN AEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLM 60

Query: 100 SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAATTTQLT 159
           SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEA        
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEA-------- 120

Query: 160 ILMELFVAEKELTQVQELFSQVADNCLNLKKAD 193
                  AEKEL QVQELFSQVADNCLNLKKAD
Sbjct: 121 -------AEKELKQVQELFSQVADNCLNLKKAD 138

[Close]

BLAST of Spg022971 vs. NCBI nr
Match: KAG6605829.1 (Mediator of RNA polymerase II transcription subunit 21, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 245.0 bits (624), Expect = 5.4e-61
Identity = 134/153 (87.58%), Postives = 136/153 (88.89%), Query Frame = 0


Query: 40  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 99
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTED+AN AEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLM 60

Query: 100 SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAATTTQLT 159
           SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEA        
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEA-------- 120

Query: 160 ILMELFVAEKELTQVQELFSQVADNCLNLKKAD 193
                  AEKEL QVQELFSQVADNC+NLKKAD
Sbjct: 121 -------AEKELKQVQELFSQVADNCMNLKKAD 138

[Close]

BLAST of Spg022971 vs. NCBI nr
Match: XP_023532119.1 (mediator of RNA polymerase II transcription subunit 21 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243.0 bits (619), Expect = 2.0e-60
Identity = 133/153 (86.93%), Postives = 135/153 (88.24%), Query Frame = 0


Query: 40  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 99
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPT+D+AN  EQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTDDSANFVEQPKLM 60

Query: 100 SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAATTTQLT 159
           SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEA        
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEA-------- 120

Query: 160 ILMELFVAEKELTQVQELFSQVADNCLNLKKAD 193
                  AEKEL QVQELFSQVADNCLNLKKAD
Sbjct: 121 -------AEKELKQVQELFSQVADNCLNLKKAD 138

[Close]

BLAST of Spg022971 vs. NCBI nr
Match: XP_038893979.1 (mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida] >XP_038893980.1 mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida])

HSP 1 Score: 238.4 bits (607), Expect = 5.0e-59
Identity = 131/153 (85.62%), Postives = 134/153 (87.58%), Query Frame = 0


Query: 40  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 99
           MDIISQLQEQVN IAALAFNTFGTLQRDAPPVRLSPNYPEPP HEPTED+ANIAEQPKLM
Sbjct: 1   MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLM 60

Query: 100 SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAATTTQLT 159
           SAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQL+A        
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLQA-------- 120

Query: 160 ILMELFVAEKELTQVQELFSQVADNCLNLKKAD 193
                  AE+EL QVQELFSQVADNCLNLKKAD
Sbjct: 121 -------AERELIQVQELFSQVADNCLNLKKAD 138

[Close]

BLAST of Spg022971 vs. NCBI nr
Match: XP_022153730.1 (mediator of RNA polymerase II transcription subunit 21 [Momordica charantia])

HSP 1 Score: 238.0 bits (606), Expect = 6.6e-59
Identity = 133/153 (86.93%), Postives = 134/153 (87.58%), Query Frame = 0


Query: 40  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 99
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS NYPEPP  EPTED+ANIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSSNYPEPPSQEPTEDSANIAEQPKLM 60

Query: 100 SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAATTTQLT 159
           SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEA        
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEA-------- 120

Query: 160 ILMELFVAEKELTQVQELFSQVADNCLNLKKAD 193
                  AEKEL QVQELFSQVADNCLNLKKAD
Sbjct: 121 -------AEKELKQVQELFSQVADNCLNLKKAD 138

[Close]

BLAST of Spg022971 vs. ExPASy Swiss-Prot
Match: C0LU16 (Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana OX=3702 GN=MED21 PE=1 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.6e-47
Identity = 109/154 (70.78%), Postives = 116/154 (75.32%), Query Frame = 0


Query: 40  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNAN-IAEQPKL 99
           MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP      D+A    EQPK 
Sbjct: 1   MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQ 60

Query: 100 MSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAATTTQL 159
           +SA LVKAAKQFD LVAALPLS+GGE  QLKRIAELQ END VGQELQKQLEA       
Sbjct: 61  LSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQVENDLVGQELQKQLEA------- 120

Query: 160 TILMELFVAEKELTQVQELFSQVADNCLNLKKAD 193
                   AEKEL QVQELF Q ADNCLN+KK +
Sbjct: 121 --------AEKELKQVQELFGQAADNCLNMKKPE 139

[Close]

BLAST of Spg022971 vs. ExPASy Swiss-Prot
Match: Q7ZTI5 (Mediator of RNA polymerase II transcription subunit 21 OS=Danio rerio OX=7955 GN=med21 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.7e-04
Identity = 34/110 (30.91%), Postives = 54/110 (49.09%), Query Frame = 0


Query: 41  DIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS---PNYPEPPPHEPTEDNANIAEQPK 100
           D ++QLQ+ VN++A    N  G LQ+ APP   S       +  P  PTE+ A      +
Sbjct: 3   DRLTQLQDAVNSLADQFCNAIGVLQQCAPPASFSNIQTAINKDQPSNPTEEYA------Q 62

Query: 101 LMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQK 148
           L +A + + AK  DVL+ +LP  +     Q   + +L+ EN      L++
Sbjct: 63  LFAALIARTAKDVDVLIDSLPSEESTAALQAASLRQLEEENQEAAARLEE 106

[Close]

BLAST of Spg022971 vs. ExPASy Swiss-Prot
Match: Q61BU1 (Mediator of RNA polymerase II transcription subunit 21 OS=Caenorhabditis briggsae OX=6238 GN=mdt-21 PE=3 SV=2)

HSP 1 Score: 45.4 bits (106), Expect = 8.2e-04
Identity = 39/138 (28.26%), Postives = 71/138 (51.45%), Query Frame = 0


Query: 41  DIISQLQEQVNTIAALAFNTFGTLQRDAPPVR---LSPNYPEPPPHEPTEDNANIAEQPK 100
           D ++QLQ+ +N +A+L  N  G LQ  APP     +S ++ E P         N A    
Sbjct: 3   DRMTQLQDMINEMASLMTNAIGVLQATAPPCEFDAISQDHEEEP---------NCA---- 62

Query: 101 LMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQL-EAAATTT 160
           + +A++ K+AK  ++L+ + P+  G  E++   + +   +NDAV +E   +L E    +T
Sbjct: 63  IFAASIAKSAKNIEILIDSFPIEAGNMEDE---VEQKMIQNDAVQREKVGELKELVGEST 122

Query: 161 QLTILMELFVAEKELTQV 175
           QL   ++  ++E    Q+
Sbjct: 123 QLVSAVQKKLSEISRVQM 124

[Close]

BLAST of Spg022971 vs. ExPASy TrEMBL
Match: A0A6J1K432 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucurbita maxima OX=3661 GN=LOC111491504 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.5e-61
Identity = 135/153 (88.24%), Postives = 136/153 (88.89%), Query Frame = 0


Query: 40  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 99
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTED+AN AEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLM 60

Query: 100 SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAATTTQLT 159
           SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEA        
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEA-------- 120

Query: 160 ILMELFVAEKELTQVQELFSQVADNCLNLKKAD 193
                  AEKEL QVQELFSQVADNCLNLKKAD
Sbjct: 121 -------AEKELKQVQELFSQVADNCLNLKKAD 138

[Close]

BLAST of Spg022971 vs. ExPASy TrEMBL
Match: A0A6J1H2M0 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucurbita moschata OX=3662 GN=LOC111459801 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.5e-61
Identity = 135/153 (88.24%), Postives = 136/153 (88.89%), Query Frame = 0


Query: 40  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 99
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTED+AN AEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLM 60

Query: 100 SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAATTTQLT 159
           SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEA        
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEA-------- 120

Query: 160 ILMELFVAEKELTQVQELFSQVADNCLNLKKAD 193
                  AEKEL QVQELFSQVADNCLNLKKAD
Sbjct: 121 -------AEKELKQVQELFSQVADNCLNLKKAD 138

[Close]

BLAST of Spg022971 vs. ExPASy TrEMBL
Match: A0A6J1DHM9 (Mediator of RNA polymerase II transcription subunit 21 OS=Momordica charantia OX=3673 GN=LOC111021179 PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 3.2e-59
Identity = 133/153 (86.93%), Postives = 134/153 (87.58%), Query Frame = 0


Query: 40  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 99
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS NYPEPP  EPTED+ANIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSSNYPEPPSQEPTEDSANIAEQPKLM 60

Query: 100 SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAATTTQLT 159
           SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEA        
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEA-------- 120

Query: 160 ILMELFVAEKELTQVQELFSQVADNCLNLKKAD 193
                  AEKEL QVQELFSQVADNCLNLKKAD
Sbjct: 121 -------AEKELKQVQELFSQVADNCLNLKKAD 138

[Close]

BLAST of Spg022971 vs. ExPASy TrEMBL
Match: A0A0A0KZ00 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis sativus OX=3659 GN=Csa_4G268030 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 7.1e-59
Identity = 131/153 (85.62%), Postives = 132/153 (86.27%), Query Frame = 0


Query: 40  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 99
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP  EPTEDNA IAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60

Query: 100 SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAATTTQLT 159
           SAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAEND VGQELQKQL+A        
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQA-------- 120

Query: 160 ILMELFVAEKELTQVQELFSQVADNCLNLKKAD 193
                  AEKEL QVQELFSQVADNCLNLKKAD
Sbjct: 121 -------AEKELVQVQELFSQVADNCLNLKKAD 138

[Close]

BLAST of Spg022971 vs. ExPASy TrEMBL
Match: A0A5A7TEZ9 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00920 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 7.8e-58
Identity = 129/153 (84.31%), Postives = 132/153 (86.27%), Query Frame = 0


Query: 40  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNANIAEQPKLM 99
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP  EPTED+A IAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60

Query: 100 SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAATTTQLT 159
           SAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAEND VGQELQKQL+A        
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQA-------- 120

Query: 160 ILMELFVAEKELTQVQELFSQVADNCLNLKKAD 193
                  AE+EL QVQELFSQVADNCLNLKKAD
Sbjct: 121 -------AEQELVQVQELFSQVADNCLNLKKAD 138

[Close]

BLAST of Spg022971 vs. TAIR 10
Match: AT4G04780.1 (mediator 21 )

HSP 1 Score: 190.7 bits (483), Expect = 1.1e-48
Identity = 109/154 (70.78%), Postives = 116/154 (75.32%), Query Frame = 0


Query: 40  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDNAN-IAEQPKL 99
           MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP      D+A    EQPK 
Sbjct: 1   MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQ 60

Query: 100 MSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAATTTQL 159
           +SA LVKAAKQFD LVAALPLS+GGE  QLKRIAELQ END VGQELQKQLEA       
Sbjct: 61  LSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQVENDLVGQELQKQLEA------- 120

Query: 160 TILMELFVAEKELTQVQELFSQVADNCLNLKKAD 193
                   AEKEL QVQELF Q ADNCLN+KK +
Sbjct: 121 --------AEKELKQVQELFGQAADNCLNMKKPE 139

The following BLAST results are available for this feature:

BLAST of Spg022971 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958635.1	3.2e-61	88.24	mediator of RNA polymerase II transcription subunit 21 [Cucurbita moschata] >XP_...	[more]
KAG6605829.1	5.4e-61	87.58	Mediator of RNA polymerase II transcription subunit 21, partial [Cucurbita argyr...	[more]
XP_023532119.1	2.0e-60	86.93	mediator of RNA polymerase II transcription subunit 21 [Cucurbita pepo subsp. pe...	[more]
XP_038893979.1	5.0e-59	85.62	mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida] ...	[more]
XP_022153730.1	6.6e-59	86.93	mediator of RNA polymerase II transcription subunit 21 [Momordica charantia]	[more]

BLAST of Spg022971 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C0LU16	1.6e-47	70.78	Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana O...	[more]
Q7ZTI5	3.7e-04	30.91	Mediator of RNA polymerase II transcription subunit 21 OS=Danio rerio OX=7955 GN...	[more]
Q61BU1	8.2e-04	28.26	Mediator of RNA polymerase II transcription subunit 21 OS=Caenorhabditis briggsa...	[more]

BLAST of Spg022971 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K432	1.5e-61	88.24	Mediator of RNA polymerase II transcription subunit 21 OS=Cucurbita maxima OX=36...	[more]
A0A6J1H2M0	1.5e-61	88.24	Mediator of RNA polymerase II transcription subunit 21 OS=Cucurbita moschata OX=...	[more]
A0A6J1DHM9	3.2e-59	86.93	Mediator of RNA polymerase II transcription subunit 21 OS=Momordica charantia OX...	[more]
A0A0A0KZ00	7.1e-59	85.62	Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis sativus OX=365...	[more]
A0A5A7TEZ9	7.8e-58	84.31	Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo var. maku...	[more]

BLAST of Spg022971 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G04780.1	1.1e-48	70.78	mediator 21	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 124..151
None	No IPR available	GENE3D	6.10.280.10	Mediator complex, subunit Med21	coord: 40..165 e-value: 4.0E-25 score: 90.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..89
IPR021384	Mediator complex, subunit Med21	PFAM	PF11221	Med21	coord: 40..154 e-value: 1.7E-23 score: 83.5
IPR021384	Mediator complex, subunit Med21	PANTHER	PTHR13381	RNA POLYMERASE II HOLOENZYME COMPONENT SRB7	coord: 40..190
IPR037212	Mediator complex, subunit Med7/Med21-like	SUPERFAMILY	140718	Mediator hinge subcomplex-like	coord: 40..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg022971.1	Spg022971.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0043078	polar nucleus
molecular_function	GO:0003712	transcription coregulator activity