Spg022932 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg022932
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Locationscaffold5: 13967915 .. 13969132 (-)
RNA-Seq ExpressionSpg022932
SyntenySpg022932
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAATCTAAGCACAGACGATTTAGCTATAAGCGCTATCATAATGTGGATGATTTGGTCGACTACGAACAGAGAAGAACTACTCTCAAGAGAAAGAACACCAGATTTTCTCATTCAAGCAATCAGTAGCCATATTTCAAAAAGGGAGAATTCTTACCTCAAGCAAAATTCCCCAAAAAGATTGAGGAGCATTGTGAATCAGGCGGTATGGACAAAGCCAAAGCTGGGTAGCTGGAAGCTGAATTCCGTCGCTTCTTGGAACGAGAAGAAAGGCCAAGGTGGTATCGGCTGGGTCGTGCATGATTCGAACGGATCCCCAATTTGTTTTGGCCTGAGACAAATTCATCAAAAATTCCCCATCAAGACGATGGAAGCAATCGCCATTGTTGAAGGGCTGAGGGAGATAACTGATACCTGCTATCAGAAGAATCTGGCTCTAGAGGTGGAGACCGACTCTTTGGAAGTTGCCTTGGTTCTGTCCGGCGTGACTGTAGACAAATCGGAGCTGAAGTTGTTCACGGATGAAATTCAAAGGTCCACCTCTCGCTTGCCGGACATCTCGTTTAGCCATTGTAGTCGCTCATCGAACACAGTAGCCCACTGTGTTGCTAATTTAGCTTGTAATTTGGATTTTGTTGATCTGCGGGAGAGCTCCCCTTCACGGGAAAATGAGCATGTCTTTTGGGCTCCTGCTTTGCCTTTTTGGTTCTTTCCCTCTCTTTATGAGGGTAGGAATGGTTGTTAATTTCCTTATTGAATGAAGTATTATTTCAAAAAAAAAAAAAAAAAACACATCCAACTAGAGGCTTGAAAGGTCTATTTTCTACCATCATAAATTAAAAAAAAAGAAGCATTCAAAGCCTTCATAATTATGCTCAAATACTTGTACTAGTATTGCCACTATCATAAACTTGTTGATTTATTATTCCTACCCTTTTTATTTCTTGGGCTTGGATTCCAAACACAACTTAACGGAATATGAATTTCCCCATTTTGTTTGTCACCCTTTTGACAGGTGGCAGTGCCACGTCCATTTCACATCATAACACAACCAGTAGCCTTCTGCCAAGTTGCACCATCTCCCATTTCCAGCTCAGCCGGCTCTTGCAGTCGATCCACGACTCTCATGAAACCTGAGCCACCAATTGAGCCTAATCTGCTGTGGAAAATTCAGCAGCGCCTTCGAGCCACGCACTTAAACGCGGCTCTATCATAA

mRNA sequence

ATGGAGAATCTAAGCACAGACGATTTAGCTATAAGCGCTATCATAATGTGGATGATTTGGTCGACTACGAACAGAGAAGAACTACTCTCAAGAGAAAGAACACCAGATTTTCTCATTCAAGCAATCAGTAGCCATATTTCAAAAAGGGAGAATTCTTACCTCAAGCAAAATTCCCCAAAAAGATTGAGGAGCATTGTGAATCAGGCGGTATGGACAAAGCCAAAGCTGGGTAGCTGGAAGCTGAATTCCGTCGCTTCTTGGAACGAGAAGAAAGGCCAAGGTGGTATCGGCTGGGTCGTGCATGATTCGAACGGATCCCCAATTTGTTTTGGCCTGAGACAAATTCATCAAAAATTCCCCATCAAGACGATGGAAGCAATCGCCATTGTTGAAGGGCTGAGGGAGATAACTGATACCTGCTATCAGAAGAATCTGGCTCTAGAGGTGGAGACCGACTCTTTGGAAGTTGCCTTGGTTCTGTCCGGCGTGACTGTAGACAAATCGGAGCTGAAGTTGTTCACGGATGAAATTCAAAGGTCCACCTCTCGCTTGCCGGACATCTCGTTTAGCCATTGTAGTCGCTCATCGAACACAGTAGCCCACTGTGTTGCTAATTTAGCTTGTAATTTGGATTTTGTTGATCTGCGGGAGAGCTCCCCTTCACGGGAAAATGAGCATGTCTTTTGGGCTCCTGCTTTGCCTTTTTGCTCAGCCGGCTCTTGCAGTCGATCCACGACTCTCATGAAACCTGAGCCACCAATTGAGCCTAATCTGCTGTGGAAAATTCAGCAGCGCCTTCGAGCCACGCACTTAAACGCGGCTCTATCATAA

Coding sequence (CDS)

ATGGAGAATCTAAGCACAGACGATTTAGCTATAAGCGCTATCATAATGTGGATGATTTGGTCGACTACGAACAGAGAAGAACTACTCTCAAGAGAAAGAACACCAGATTTTCTCATTCAAGCAATCAGTAGCCATATTTCAAAAAGGGAGAATTCTTACCTCAAGCAAAATTCCCCAAAAAGATTGAGGAGCATTGTGAATCAGGCGGTATGGACAAAGCCAAAGCTGGGTAGCTGGAAGCTGAATTCCGTCGCTTCTTGGAACGAGAAGAAAGGCCAAGGTGGTATCGGCTGGGTCGTGCATGATTCGAACGGATCCCCAATTTGTTTTGGCCTGAGACAAATTCATCAAAAATTCCCCATCAAGACGATGGAAGCAATCGCCATTGTTGAAGGGCTGAGGGAGATAACTGATACCTGCTATCAGAAGAATCTGGCTCTAGAGGTGGAGACCGACTCTTTGGAAGTTGCCTTGGTTCTGTCCGGCGTGACTGTAGACAAATCGGAGCTGAAGTTGTTCACGGATGAAATTCAAAGGTCCACCTCTCGCTTGCCGGACATCTCGTTTAGCCATTGTAGTCGCTCATCGAACACAGTAGCCCACTGTGTTGCTAATTTAGCTTGTAATTTGGATTTTGTTGATCTGCGGGAGAGCTCCCCTTCACGGGAAAATGAGCATGTCTTTTGGGCTCCTGCTTTGCCTTTTTGCTCAGCCGGCTCTTGCAGTCGATCCACGACTCTCATGAAACCTGAGCCACCAATTGAGCCTAATCTGCTGTGGAAAATTCAGCAGCGCCTTCGAGCCACGCACTTAAACGCGGCTCTATCATAA

Protein sequence

MENLSTDDLAISAIIMWMIWSTTNREELLSRERTPDFLIQAISSHISKRENSYLKQNSPKRLRSIVNQAVWTKPKLGSWKLNSVASWNEKKGQGGIGWVVHDSNGSPICFGLRQIHQKFPIKTMEAIAIVEGLREITDTCYQKNLALEVETDSLEVALVLSGVTVDKSELKLFTDEIQRSTSRLPDISFSHCSRSSNTVAHCVANLACNLDFVDLRESSPSRENEHVFWAPALPFCSAGSCSRSTTLMKPEPPIEPNLLWKIQQRLRATHLNAALS
Homology
BLAST of Spg022932 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 94.4 bits (233), Expect = 1.7e-15
Identity = 60/208 (28.85%), Postives = 105/208 (50.48%), Query Frame = 0

Query: 1   MENLSTDDLAISAIIMWMIWSTTNREELLSRERTPDFLIQAISSHISKRENSYLKQNSPK 60
           ++  S +DL +  I  W+IW+  N         +   +IQ ++  ++  E+SY  + S  
Sbjct: 2   LDKASDEDLDVLLIGSWVIWNHRNYVIFRGEHSSFSTMIQQLTKFVT--ESSYQSETSLS 61

Query: 61  RL-RSIVNQAVWTKPKLGSWKLNSVASWNEKKGQGGIGWVVHDSNGSPICFGLRQIHQKF 120
            L +++ N+  W  P +  W LN+ ASW++   +GGIGW++   +G  +  G R +    
Sbjct: 62  MLHKTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACN 121

Query: 121 PIKTMEAIAIVEGLREITDTCYQKNLALEVETDSLEVALVLSGVTVDKSELKLFTDEIQR 180
            +K +EA AI+EGLR +T+    +   L +ETDS EV  +L+    D ++     +EI  
Sbjct: 122 NVKLLEASAILEGLRNLTNLGVLR--PLHIETDSAEVESLLNRKREDLTKTGWVVEEILN 181

Query: 181 STSRLPDISFSHCSRSSNTVAHCVANLA 208
                  ++F+   R +N  AH +A  A
Sbjct: 182 LRDSCEILAFAKVGRETNGCAHSLAQRA 205

BLAST of Spg022932 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 80.9 bits (198), Expect = 1.9e-11
Identity = 53/175 (30.29%), Postives = 90/175 (51.43%), Query Frame = 0

Query: 4   LSTDDLAISAIIMWMIWSTTNRE----ELLSRERTPDFLIQAISSHISK----RENSYLK 63
           LS +++A S +I W IW + NR     E +  ++    ++  I+S+I K     +    +
Sbjct: 26  LSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQ 85

Query: 64  QNS---PKRLRSIVNQAV-WTKPKLGSWKLNSVASWNEKKGQGGIGWVVHDSNGSPICFG 123
           QN    P+   ++    V W+ P    WKLN+ ASW+E++  GGIGW++ D  G  +  G
Sbjct: 86  QNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAG 145

Query: 124 LRQIHQKFPIKTMEAIAIVEGLREITDTCYQKNLALEVETDSLEVALVLSGVTVD 167
             +I +K  I  +E + I+ GL+ I     Q    + +E+DS+EV  ++    VD
Sbjct: 146 NCKIREKKEINALELMTIIRGLQFIN---MQSRSPIYLESDSVEVIRLMKKEDVD 197

BLAST of Spg022932 vs. NCBI nr
Match: BAT06678.1 (Os08g0558501 [Oryza sativa Japonica Group])

HSP 1 Score: 79.7 bits (195), Expect = 4.3e-11
Identity = 64/224 (28.57%), Postives = 101/224 (45.09%), Query Frame = 0

Query: 1   MENLSTDDLAISAIIMWMIWSTTNREELLSRERTPDFLI--QAISSHI-SKRENSYLKQN 60
           +E    +D  +  +++W IW T  R E++  +  P  L+  + I S++ S  E     Q 
Sbjct: 25  LEQSQPEDQVMLLMVLWRIWHT--RNEIVHGKPAPGILVSKRFIESYVLSLAEIKQHPQA 84

Query: 61  SPKRLRSIVNQAV----------------WTKPKLGSWKLNSVASWNEKKGQGGIGWVVH 120
           +P++ + +V+  +                W+KP  GS KLN   S+ E +G+GGIG V+ 
Sbjct: 85  NPEKGKHVVDVVLKKSHSIKRSREPAPDKWSKPLPGSMKLNVDGSFQESEGKGGIGAVLR 144

Query: 121 DSNGSPICFGLRQIHQKFPIKTMEAIAIVEGLREITDTCYQKNLALEVETDSLEVALVLS 180
           +  G  I      +        ME +A  +GL           L + +ETD L +  +  
Sbjct: 145 NCTGEVIFAACGHVDHCSSALEMELLASRDGLALALQWTL---LPIVIETDCLAMVHLFR 204

Query: 181 GVTVDKSELKLFTDEIQRSTSRLPDISFSHCSRSSNTVAHCVAN 206
             T  KSEL     EI        DISF+ C RS N ++HC+AN
Sbjct: 205 DATGAKSELAFLITEIDSLLVGNRDISFNKCLRSQNLISHCLAN 243

BLAST of Spg022932 vs. NCBI nr
Match: EEE69144.1 (hypothetical protein OsJ_28268 [Oryza sativa Japonica Group])

HSP 1 Score: 79.7 bits (195), Expect = 4.3e-11
Identity = 64/224 (28.57%), Postives = 101/224 (45.09%), Query Frame = 0

Query: 1    MENLSTDDLAISAIIMWMIWSTTNREELLSRERTPDFLI--QAISSHI-SKRENSYLKQN 60
            +E    +D  +  +++W IW T  R E++  +  P  L+  + I S++ S  E     Q 
Sbjct: 1009 LEQSQPEDQVMLLMVLWRIWHT--RNEIVHGKPAPGILVSKRFIESYVLSLAEIKQHPQA 1068

Query: 61   SPKRLRSIVNQAV----------------WTKPKLGSWKLNSVASWNEKKGQGGIGWVVH 120
            +P++ + +V+  +                W+KP  GS KLN   S+ E +G+GGIG V+ 
Sbjct: 1069 NPEKGKHVVDVVLKKSHSIKRSREPAPDKWSKPLPGSMKLNVDGSFQESEGKGGIGAVLR 1128

Query: 121  DSNGSPICFGLRQIHQKFPIKTMEAIAIVEGLREITDTCYQKNLALEVETDSLEVALVLS 180
            +  G  I      +        ME +A  +GL           L + +ETD L +  +  
Sbjct: 1129 NCTGEVIFAACGHVDHCSSALEMELLASRDGLALALQWTL---LPIVIETDCLAMVHLFR 1188

Query: 181  GVTVDKSELKLFTDEIQRSTSRLPDISFSHCSRSSNTVAHCVAN 206
              T  KSEL     EI        DISF+ C RS N ++HC+AN
Sbjct: 1189 DATGAKSELAFLITEIDSLLVGNRDISFNKCLRSQNLISHCLAN 1227

BLAST of Spg022932 vs. NCBI nr
Match: TVU49286.1 (hypothetical protein EJB05_00593, partial [Eragrostis curvula])

HSP 1 Score: 77.8 bits (190), Expect = 1.6e-10
Identity = 53/218 (24.31%), Postives = 99/218 (45.41%), Query Frame = 0

Query: 7   DDLAISAIIMWMIWSTTN----REELLSRERTPDFLIQAISSHISKRENSYLKQ------ 66
           D +A   +++W +W+  N      E +S E +  FL + +   +S R+  Y ++      
Sbjct: 88  DVMANFVMMLWRVWNVRNGALKAGEKISIEGSVIFLTRYMDGLLSARQQYYAREGKGKAQ 147

Query: 67  ----NSPKRLRSIVNQAVWTKPKLGSWKLNSVASWNEKKGQGGIGWVVHDSNGSPICFGL 126
               ++P  +R       W  P  G +K+N   ++N + G  G+G V+ D++G P+    
Sbjct: 148 VVTLSTPSLIRKTEEDRRWVPPARGKFKINVDGAYNAQSGAAGLGVVIRDADGHPLLMAW 207

Query: 127 RQIHQKFPIKTMEAIAIVEGLREITDTCYQKNLALEVETDSLEVALVLSGVTVDKSELKL 186
           R++      +  EA A ++G+R          +++ +E+D+  V   L     D+S +  
Sbjct: 208 RKLFHCRDAEEAEAAACLDGVRL---AMRWPGISMVLESDAALVVAKLKTDAPDRSLIAG 267

Query: 187 FTDEIQRSTSRLPDISFSHCSRSSNTVAHCVANLACNL 211
              +I+    +L +I      R  N VAH +A LAC L
Sbjct: 268 LISDIREECRQLAEIEVCKIGRKQNAVAHSLAQLACRL 302

BLAST of Spg022932 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 8.2e-16
Identity = 60/208 (28.85%), Postives = 105/208 (50.48%), Query Frame = 0

Query: 1   MENLSTDDLAISAIIMWMIWSTTNREELLSRERTPDFLIQAISSHISKRENSYLKQNSPK 60
           ++  S +DL +  I  W+IW+  N         +   +IQ ++  ++  E+SY  + S  
Sbjct: 2   LDKASDEDLDVLLIGSWVIWNHRNYVIFRGEHSSFSTMIQQLTKFVT--ESSYQSETSLS 61

Query: 61  RL-RSIVNQAVWTKPKLGSWKLNSVASWNEKKGQGGIGWVVHDSNGSPICFGLRQIHQKF 120
            L +++ N+  W  P +  W LN+ ASW++   +GGIGW++   +G  +  G R +    
Sbjct: 62  MLHKTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACN 121

Query: 121 PIKTMEAIAIVEGLREITDTCYQKNLALEVETDSLEVALVLSGVTVDKSELKLFTDEIQR 180
            +K +EA AI+EGLR +T+    +   L +ETDS EV  +L+    D ++     +EI  
Sbjct: 122 NVKLLEASAILEGLRNLTNLGVLR--PLHIETDSAEVESLLNRKREDLTKTGWVVEEILN 181

Query: 181 STSRLPDISFSHCSRSSNTVAHCVANLA 208
                  ++F+   R +N  AH +A  A
Sbjct: 182 LRDSCEILAFAKVGRETNGCAHSLAQRA 205

BLAST of Spg022932 vs. ExPASy TrEMBL
Match: A0A5B7BU49 (RNase H domain-containing protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_041820 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-12
Identity = 66/215 (30.70%), Postives = 90/215 (41.86%), Query Frame = 0

Query: 20  WSTTNREELLSRERTPDFLIQAISSHISKRENSYLKQNSPKRLRSIVNQAVWTKPKLGSW 79
           W   N      R R P+ +  A S ++     + ++Q      R  V   VW+ P+ G +
Sbjct: 1   WGHRNAIVFGQRGRAPESIPAAASQYVMDFRTAQIRQQVMAVSRVQVGDVVWSPPREGIF 60

Query: 80  KLNSVASWNEKKGQGGIGWVVHDSNGSPICFGLRQIHQKFPIKTMEAIAIVEGLREITDT 139
           KLN  ASW   +  GGIG V+ D  G  I    +QI     I   EA+AI+ GL    D 
Sbjct: 61  KLNVHASWVLGESCGGIGGVIRDWKGEVIGGFAKQIRTCSRIDFAEALAILHGLMFAKDV 120

Query: 140 CYQKNLALEVETDSLEVALVLSGVTVDKSELKLFTDEIQRSTSRLPDISFSHCSRSSNTV 199
             Q    L VE D L V + +     D SEL    D I++         F H  R++N+V
Sbjct: 121 GLQD---LSVEGDCLSVLIAIESSVEDLSELGHVFDHIKQCRDGFHSCDFGHVRRAANSV 180

Query: 200 AHCVANLACNLDFVDLRESSPSRENEHVFWAPALP 235
           AH +A  A                N+ VFW   LP
Sbjct: 181 AHEIAVFA-------------RAVNDEVFWLEDLP 199

BLAST of Spg022932 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 9.4e-12
Identity = 53/175 (30.29%), Postives = 90/175 (51.43%), Query Frame = 0

Query: 4   LSTDDLAISAIIMWMIWSTTNRE----ELLSRERTPDFLIQAISSHISK----RENSYLK 63
           LS +++A S +I W IW + NR     E +  ++    ++  I+S+I K     +    +
Sbjct: 26  LSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQ 85

Query: 64  QNS---PKRLRSIVNQAV-WTKPKLGSWKLNSVASWNEKKGQGGIGWVVHDSNGSPICFG 123
           QN    P+   ++    V W+ P    WKLN+ ASW+E++  GGIGW++ D  G  +  G
Sbjct: 86  QNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAG 145

Query: 124 LRQIHQKFPIKTMEAIAIVEGLREITDTCYQKNLALEVETDSLEVALVLSGVTVD 167
             +I +K  I  +E + I+ GL+ I     Q    + +E+DS+EV  ++    VD
Sbjct: 146 NCKIREKKEINALELMTIIRGLQFIN---MQSRSPIYLESDSVEVIRLMKKEDVD 197

BLAST of Spg022932 vs. ExPASy TrEMBL
Match: A0A7C9A7V4 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.6e-11
Identity = 63/199 (31.66%), Postives = 92/199 (46.23%), Query Frame = 0

Query: 13  AIIMWMIWSTTNREELLSRERTPDFLIQAISSHISKRENSYLKQNSPKRLRSIVNQAVWT 72
           A ++W +W T NR  +  R+R    L               L+ N  +  R       W 
Sbjct: 231 ATLLWGLWLTRNR-WVFDRKREDVGLTMLRCVDSWNHYVEVLQANGERGGRKQGECLTWE 290

Query: 73  KPKLGSWKLNSVASWNEKKGQGGIGWVVHDSNGSPICFGLRQIHQKFPIKTMEAIAIVEG 132
            P+ G  K+N  AS   + G  G+G VV D NG       R     + ++T+EA A++ G
Sbjct: 291 PPRQGQLKVNVDAS-TGRDGMKGVGVVVRDKNGDVKIMACRSFRANWEVETVEAYAVLYG 350

Query: 133 LREITDTCYQKNL-ALEVETDSLEVALVLSGVTVDKSELKLFTDEIQRSTSRLPDISFSH 192
           L+     C+Q+    LE+ETDS +VA  L+G     +    F  +     +R+P ISFS 
Sbjct: 351 LQ----ICWQEGFHTLELETDSKQVADALNGKKDFLNYTSTFIHDALNLGTRIPVISFSF 410

Query: 193 CSRSSNTVAHCVANLACNL 211
            SR +N VAH +A LA  L
Sbjct: 411 VSRVTNRVAHELARLALRL 423

BLAST of Spg022932 vs. ExPASy TrEMBL
Match: A0A6J5UE59 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23353 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.0e-10
Identity = 65/218 (29.82%), Postives = 101/218 (46.33%), Query Frame = 0

Query: 1    MENLSTDDLAISAII-----MWMIWSTTNREELLSRERTPD----FLIQAISSHISKREN 60
            M  L++ + A  AI      +W IW   N       +  P      L++ +S   + + +
Sbjct: 1048 MTTLNSSEHAAEAIQWFVFGLWRIWKARNLAVFDGVQADPTEVVLLLLKQVSEFRTAKHD 1107

Query: 61   SYLKQNSPKRLRSIVNQAVWTKPKLGSWKLNSVASWNEKKGQGGIGWVVHDSNGSPICFG 120
                Q  P +  S      W KP LG  K+N  A+W+ ++  GG+GWV+ DS G  +C G
Sbjct: 1108 LQDLQPQPLQPASSPAPLSWCKPSLGLLKVNCDAAWSAQRMGGGVGWVIRDSFGLLLCAG 1167

Query: 121  LR-QIHQKFPIKTMEAIAIVEGLREITDTCYQKNLA-LEVETDSLEVALVLSGVTVDKSE 180
             +  +H    I  ME +AI   L E    C   +L  + VE+DS +  L+L+G     S+
Sbjct: 1168 GQGDLHGSSAI-MMELLAIRHALSE----CANFHLTDIIVESDSQKGILMLNGRATVDSD 1227

Query: 181  LKLFTDEIQRSTSRLPDISFSHCSRSSNTVAHCVANLA 208
            L+    +I++  + L  +SF    RS N  AH VA  A
Sbjct: 1228 LEGIVFDIRQLVASLSRVSFVFAPRSCNQAAHSVAGFA 1260

BLAST of Spg022932 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.7e-05
Identity = 44/198 (22.22%), Postives = 85/198 (42.93%), Query Frame = 0

Query: 15  IMWMIWSTTNREELLSRERTPDFLIQAISSHISKREN---SYLKQNSPKRLRSIVNQAVW 74
           ++W IW   N         +P   + +  +      N   S+ K  SP R +   N+  W
Sbjct: 268 LIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTR-QIAENKIEW 327

Query: 75  TKPKLGSWKLNSVASWNEKKGQGGIGWVVHDSNGSPICFG-LRQIHQKFPIKTMEAIAIV 134
             P     K N  A ++ +K +   GW++ +  G+PI +G ++  H   P++  E  A++
Sbjct: 328 RNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEA-ETKALL 387

Query: 135 EGLREITDTCYQKNLALEVETDSLEVALVLSGVTVDKSELKLFTDEIQRSTSRLPDISFS 194
             L++   T  +    + +E D   +  +++G++   S L    ++I    ++   I F 
Sbjct: 388 AALQQ---TWIRGYTQVFMEGDCQTLINLINGISF-HSSLANHLEDISFWANKFASIQFG 447

Query: 195 HCSRSSNTVAHCVANLAC 209
              R  N +AH +A   C
Sbjct: 448 FIRRKGNKLAHVLAKYGC 459

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155262.11.7e-1528.85uncharacterized protein LOC111022403 [Momordica charantia][more]
XP_022143317.11.9e-1130.29uncharacterized protein LOC111013216 [Momordica charantia][more]
BAT06678.14.3e-1128.57Os08g0558501 [Oryza sativa Japonica Group][more]
EEE69144.14.3e-1128.57hypothetical protein OsJ_28268 [Oryza sativa Japonica Group][more]
TVU49286.11.6e-1024.31hypothetical protein EJB05_00593, partial [Eragrostis curvula][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DNV98.2e-1628.85uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A5B7BU491.1e-1230.70RNase H domain-containing protein (Fragment) OS=Davidia involucrata OX=16924 GN=... [more]
A0A6J1CQG09.4e-1230.29uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A7C9A7V44.6e-1131.66Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A6J5UE593.0e-1029.82Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=... [more]
Match NameE-valueIdentityDescription
AT3G09510.11.7e-0522.22Ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 84..207
e-value: 1.8E-20
score: 73.0
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 79..211
e-value: 1.6E-12
score: 49.5
NoneNo IPR availablePANTHERPTHR33033:SF67SUBFAMILY NOT NAMEDcoord: 67..216
NoneNo IPR availablePANTHERPTHR33033POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 67..216
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 81..205
e-value: 9.02818E-17
score: 72.732
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 79..209

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg022932.1Spg022932.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity