Spg022789 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg022789
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	F-box protein At2g35280-like
Location	scaffold2: 9012594 .. 9012994 (-)
RNA-Seq Expression	Spg022789
Synteny	Spg022789

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATTTCCCCACCACCCATTGAATTCCTTCCCGAAGATTTACTAATTCAAGTGCTTGTCAAAGTTGCAACCTCTTCGTCGACTGATTTATTCAACACTAAATTAGCCACCAAAGATTTTCTCGAAGCATCGATCGATGGCCAGATATTTCGCCACGTGTCGCTCGGAAGCTTCTCGAAAGTTCTATGGAAGACTTGCCCCGAATTCTTGTCGTTCATGGAGAATTATAATAAGAATGGGAATCCCGAAGCTTTGTACAGAAAGGGCATGTTGTAATTCTTCACCCATTGTAAGGAAGCTTCTGGATTGGCGAATTTGAAAGCTTCTGCGGAGCAAGGCCATGCAGAAGCTTGTTATGTATACAGTGTTGTTTTGCGTTCGACAGGTTTGGAGGATGA

mRNA sequence

ATGGCAATTTCCCCACCACCCATTGAATTCCTTCCCGAAGATTTACTAATTCAAGTGCTTGTCAAAGTTGCAACCTCTTCGTCGACTGATTTATTCAACACTAAATTAGCCACCAAAGATTTTCTCGAAGCATCGATCGATGGCCAGATATTTCGCCACGTGTCGCTCGGAAGCTTCTCGAAAGTTCTATGGAAGACTTGCCCCGAATTCTTGTCGTTCATGGAGAATTATAATAAGAATGGGAATCCCGAAGCTTTGTACAGAAAGGGCATGTTGTTTGGAGGATGA

Coding sequence (CDS)

ATGGCAATTTCCCCACCACCCATTGAATTCCTTCCCGAAGATTTACTAATTCAAGTGCTTGTCAAAGTTGCAACCTCTTCGTCGACTGATTTATTCAACACTAAATTAGCCACCAAAGATTTTCTCGAAGCATCGATCGATGGCCAGATATTTCGCCACGTGTCGCTCGGAAGCTTCTCGAAAGTTCTATGGAAGACTTGCCCCGAATTCTTGTCGTTCATGGAGAATTATAATAAGAATGGGAATCCCGAAGCTTTGTACAGAAAGGGCATGTTGTTTGGAGGATGA

Protein sequence

MAISPPPIEFLPEDLLIQVLVKVATSSSTDLFNTKLATKDFLEASIDGQIFRHVSLGSFSKVLWKTCPEFLSFMENYNKNGNPEALYRKGMLFGG

Homology

[Close]

BLAST of Spg022789 vs. NCBI nr
Match: XP_038891683.1 (putative F-box protein At1g67623 [Benincasa hispida])

HSP 1 Score: 119.0 bits (297), Expect = 2.2e-23
Identity = 60/92 (65.22%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 1  MAISPPPIEFLPEDLLIQVLVKVATSSSTDLFNTKLATKDFLEASIDGQIFRHVSLGSFS 60
          +  SP  I+ LP DLLI+VL KVA SS TDL   KLATKDFLE S +G IFRHVSLG+FS
Sbjct: 3  VTFSPSVIKSLPNDLLIEVLAKVAASSYTDLVQAKLATKDFLEVSNEGYIFRHVSLGNFS 62

Query: 61 KVLWKTCPEFLSFMENYNKNGNPEALYRKGML 93
          K+LW   PEF S +E  N N NPE+LYRKGML
Sbjct: 63 KLLWNNSPEFWSLIETCNNNENPESLYRKGML 94

[Close]

BLAST of Spg022789 vs. NCBI nr
Match: XP_022957263.1 (F-box protein At2g35280-like [Cucurbita moschata])

HSP 1 Score: 118.6 bits (296), Expect = 2.9e-23
Identity = 60/89 (67.42%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 4   SPPPIEFLPEDLLIQVLVKVATSSSTDLFNTKLATKDFLEASIDGQIFRHVSLGSFSKVL 63
           SPPPIE LP DLLI+VL KVA SS TDL + KLATK FLEAS    IF+H SL +F K+L
Sbjct: 28  SPPPIESLPNDLLIEVLAKVAASSFTDLVHAKLATKKFLEASSHNYIFQHASLENFHKLL 87

Query: 64  WKTCPEFLSFMENYNKNGNPEALYRKGML 93
           W    EF SFME  N NGNPE LYRKGML
Sbjct: 88  WNNSKEFWSFMEKCNNNGNPETLYRKGML 116

[Close]

BLAST of Spg022789 vs. NCBI nr
Match: KAG7031905.1 (putative F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.1 bits (292), Expect = 8.4e-23
Identity = 59/89 (66.29%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 4   SPPPIEFLPEDLLIQVLVKVATSSSTDLFNTKLATKDFLEASIDGQIFRHVSLGSFSKVL 63
           SPPPIE LP DLLI+VL KVA SS TDL + KLATK FLEAS    IF+H SL +F K+L
Sbjct: 28  SPPPIESLPNDLLIEVLAKVAASSFTDLVHAKLATKKFLEASSHNYIFQHASLENFHKLL 87

Query: 64  WKTCPEFLSFMENYNKNGNPEALYRKGML 93
           W    EF SFME  N NGNPE LY+KGML
Sbjct: 88  WNNSKEFWSFMEKCNNNGNPETLYQKGML 116

[Close]

BLAST of Spg022789 vs. NCBI nr
Match: KAG6601105.1 (putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-22
Identity = 59/89 (66.29%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 4   SPPPIEFLPEDLLIQVLVKVATSSSTDLFNTKLATKDFLEASIDGQIFRHVSLGSFSKVL 63
           SPPPIE LP DLLI+VL KVA  S TDL + KLATK FLEAS    IF+H SL +F K+L
Sbjct: 28  SPPPIESLPNDLLIEVLAKVAACSFTDLVHAKLATKKFLEASSHNYIFQHASLENFHKLL 87

Query: 64  WKTCPEFLSFMENYNKNGNPEALYRKGML 93
           W    EF SFME  N NGNPE LYRKGML
Sbjct: 88  WNNSKEFWSFMEKCNNNGNPETLYRKGML 116

[Close]

BLAST of Spg022789 vs. NCBI nr
Match: XP_022957262.1 (putative F-box protein At1g67623 [Cucurbita moschata])

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-22
Identity = 59/89 (66.29%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 4  SPPPIEFLPEDLLIQVLVKVATSSSTDLFNTKLATKDFLEASIDGQIFRHVSLGSFSKVL 63
          SPPPIE LP DLLI+VL KVA  S TDL + KLATK FLEAS    IF+H SL +F K+L
Sbjct: 7  SPPPIESLPNDLLIEVLAKVAACSYTDLVHAKLATKKFLEASSHNYIFQHASLENFHKLL 66

Query: 64 WKTCPEFLSFMENYNKNGNPEALYRKGML 93
          W    EF SFME  N NGNPE LYRKGML
Sbjct: 67 WNNSKEFWSFMEKCNNNGNPETLYRKGML 95

[Close]

BLAST of Spg022789 vs. ExPASy Swiss-Prot
Match: Q9FXC7 (Putative F-box protein At1g67623 OS=Arabidopsis thaliana OX=3702 GN=At1g67623 PE=4 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.1e-04
Identity = 25/85 (29.41%), Postives = 44/85 (51.76%), Query Frame = 0


Query: 8   IEFLPEDLLIQVLVKVATSSSTDLFNTKLATKDFLEASIDGQIFRHVSLGSFSKVLWKTC 67
           ++ LPEDLL+++      SS + + N +L +K F     +  +F  +SL     + W   
Sbjct: 24  LDSLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICDEKYVFYRLSLKEIEFLPWH-- 83

Query: 68  PEFLSFMENYNKNGNPEALYRKGML 93
                F+E   ++ NPEAL++KG +
Sbjct: 84  ENSAKFIERCTESRNPEALFQKGFI 106

[Close]

BLAST of Spg022789 vs. ExPASy Swiss-Prot
Match: Q1PEW8 (F-box protein At2g35280 OS=Arabidopsis thaliana OX=3702 GN=At2g35280 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.1e-04
Identity = 25/86 (29.07%), Postives = 48/86 (55.81%), Query Frame = 0


Query: 8  IEFLPEDLLIQVLVKVATSSSTDLFNTKLATKDFLEASIDGQIFRHVSLGSFSKVLWKTC 67
          +E LP+DLL +++ K+   S+ D  N  L+ K+   ++ D ++ + ++L    K    +C
Sbjct: 11 LEALPQDLLREIVAKIGVKSAEDYHNCILSCKELGASANDERVLKTLNLALLVKKP-LSC 70

Query: 68 PEFLSFMENYNKNGNPEALYRKGMLF 94
           + L  M+    N NP+A Y KG+++
Sbjct: 71 RKHLLIMKKCLANNNPDAHYIKGIIW 95

[Close]

BLAST of Spg022789 vs. ExPASy TrEMBL
Match: A0A6J1GZQ6 (F-box protein At2g35280-like OS=Cucurbita moschata OX=3662 GN=LOC111458703 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.4e-23
Identity = 60/89 (67.42%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 4   SPPPIEFLPEDLLIQVLVKVATSSSTDLFNTKLATKDFLEASIDGQIFRHVSLGSFSKVL 63
           SPPPIE LP DLLI+VL KVA SS TDL + KLATK FLEAS    IF+H SL +F K+L
Sbjct: 28  SPPPIESLPNDLLIEVLAKVAASSFTDLVHAKLATKKFLEASSHNYIFQHASLENFHKLL 87

Query: 64  WKTCPEFLSFMENYNKNGNPEALYRKGML 93
           W    EF SFME  N NGNPE LYRKGML
Sbjct: 88  WNNSKEFWSFMEKCNNNGNPETLYRKGML 116

[Close]

BLAST of Spg022789 vs. ExPASy TrEMBL
Match: A0A6J1GYN4 (putative F-box protein At1g67623 OS=Cucurbita moschata OX=3662 GN=LOC111458702 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.3e-23
Identity = 59/89 (66.29%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 4  SPPPIEFLPEDLLIQVLVKVATSSSTDLFNTKLATKDFLEASIDGQIFRHVSLGSFSKVL 63
          SPPPIE LP DLLI+VL KVA  S TDL + KLATK FLEAS    IF+H SL +F K+L
Sbjct: 7  SPPPIESLPNDLLIEVLAKVAACSYTDLVHAKLATKKFLEASSHNYIFQHASLENFHKLL 66

Query: 64 WKTCPEFLSFMENYNKNGNPEALYRKGML 93
          W    EF SFME  N NGNPE LYRKGML
Sbjct: 67 WNNSKEFWSFMEKCNNNGNPETLYRKGML 95

[Close]

BLAST of Spg022789 vs. ExPASy TrEMBL
Match: A0A6J1H022 (putative F-box protein At1g67623 OS=Cucurbita moschata OX=3662 GN=LOC111458700 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.2e-22
Identity = 58/88 (65.91%), Postives = 64/88 (72.73%), Query Frame = 0


Query: 5  PPPIEFLPEDLLIQVLVKVATSSSTDLFNTKLATKDFLEASIDGQIFRHVSLGSFSKVLW 64
          PP IE LP DLLI+VL KVA  S TDL   KLATK+FLEAS  G IF+H SL +F K+LW
Sbjct: 8  PPTIESLPNDLLIEVLAKVAAFSFTDLVQAKLATKEFLEASSHGYIFQHASLRNFQKLLW 67

Query: 65 KTCPEFLSFMENYNKNGNPEALYRKGML 93
             PEF SFME  N NGNPE LY+KGML
Sbjct: 68 NNNPEFWSFMEKCNNNGNPETLYQKGML 95

[Close]

BLAST of Spg022789 vs. ExPASy TrEMBL
Match: A0A6J1JRX4 (putative F-box protein At1g67623 OS=Cucurbita maxima OX=3661 GN=LOC111487258 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.5e-22
Identity = 58/92 (63.04%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 1   MAISPPPIEFLPEDLLIQVLVKVATSSSTDLFNTKLATKDFLEASIDGQIFRHVSLGSFS 60
           ++ SPP IE LP DLLI++L KVA SS TDL   KLATK FLEAS    IF+H SL +F 
Sbjct: 25  LSASPPAIESLPNDLLIEILAKVAASSYTDLVQAKLATKKFLEASSHNYIFQHASLENFH 84

Query: 61  KVLWKTCPEFLSFMENYNKNGNPEALYRKGML 93
           K+LW    EF SFME  N NGNPE LYRKGML
Sbjct: 85  KLLWNNSTEFWSFMEKCNNNGNPETLYRKGML 116

[Close]

BLAST of Spg022789 vs. ExPASy TrEMBL
Match: A0A6J1JRV1 (putative F-box protein At1g67623 OS=Cucurbita maxima OX=3661 GN=LOC111487244 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.5e-22
Identity = 58/92 (63.04%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 1   MAISPPPIEFLPEDLLIQVLVKVATSSSTDLFNTKLATKDFLEASIDGQIFRHVSLGSFS 60
           ++ SPP IE LP DLLI++L KVA SS TDL   KLATK FLEAS    IF+H SL +F 
Sbjct: 25  LSASPPAIESLPNDLLIEILAKVAASSYTDLVQAKLATKKFLEASSHNYIFQHASLENFH 84

Query: 61  KVLWKTCPEFLSFMENYNKNGNPEALYRKGML 93
           K+LW    EF SFME  N NGNPE LYRKGML
Sbjct: 85  KLLWNNSTEFWSFMEKCNNNGNPETLYRKGML 116

[Close]

BLAST of Spg022789 vs. TAIR 10
Match: AT1G74875.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G67623.1); Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-07
Identity = 25/76 (32.89%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 17 IQVLVKVATSSSTDLFNTKLATKDFLEASIDGQIFRHVSLGSFSKVLWKTCPEFLSFMEN 76
          I +++ V +SS ++  N +L +K F   S D  I + +SL     + W+   +F +F + 
Sbjct: 21 IHLVINVLSSSLSEFRNLQLVSKSFKRISNDRYILQRLSLNKIPLLPWRNRKKFHNFFKR 80

Query: 77 YNKNGNPEALYRKGML 93
            K+GN EA+YRKG++
Sbjct: 81 CRKSGNLEAIYRKGLV 96

[Close]

BLAST of Spg022789 vs. TAIR 10
Match: AT1G67623.1 (F-box family protein )

HSP 1 Score: 45.8 bits (107), Expect = 2.2e-05
Identity = 25/85 (29.41%), Postives = 44/85 (51.76%), Query Frame = 0


Query: 8   IEFLPEDLLIQVLVKVATSSSTDLFNTKLATKDFLEASIDGQIFRHVSLGSFSKVLWKTC 67
           ++ LPEDLL+++      SS + + N +L +K F     +  +F  +SL     + W   
Sbjct: 24  LDSLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICDEKYVFYRLSLKEIEFLPWH-- 83

Query: 68  PEFLSFMENYNKNGNPEALYRKGML 93
                F+E   ++ NPEAL++KG +
Sbjct: 84  ENSAKFIERCTESRNPEALFQKGFI 106

[Close]

BLAST of Spg022789 vs. TAIR 10
Match: AT2G35280.1 (F-box family protein )

HSP 1 Score: 45.4 bits (106), Expect = 2.9e-05
Identity = 25/86 (29.07%), Postives = 48/86 (55.81%), Query Frame = 0


Query: 8  IEFLPEDLLIQVLVKVATSSSTDLFNTKLATKDFLEASIDGQIFRHVSLGSFSKVLWKTC 67
          +E LP+DLL +++ K+   S+ D  N  L+ K+   ++ D ++ + ++L    K    +C
Sbjct: 11 LEALPQDLLREIVAKIGVKSAEDYHNCILSCKELGASANDERVLKTLNLALLVKKP-LSC 70

Query: 68 PEFLSFMENYNKNGNPEALYRKGMLF 94
           + L  M+    N NP+A Y KG+++
Sbjct: 71 RKHLLIMKKCLANNNPDAHYIKGIIW 95

[Close]

BLAST of Spg022789 vs. TAIR 10
Match: AT3G30430.1 (F-box family protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.1e-04
Identity = 24/86 (27.91%), Postives = 47/86 (54.65%), Query Frame = 0


Query: 8  IEFLPEDLLIQVLVKVATSSSTDLFNTKLATKDFLEASIDGQIFRHVSLGSFSKVLWKTC 67
          +E LP+DLL +++ K+    + D  N  L+ K+   ++ D ++ + ++L    K    +C
Sbjct: 11 LEVLPQDLLGEIVAKIGAKYAEDYHNCILSCKELGASANDERVLKTLNLAPLVKKP-LSC 70

Query: 68 PEFLSFMENYNKNGNPEALYRKGMLF 94
           + L  M+    N NP+A Y KG+++
Sbjct: 71 RKHLLIMKKCLANNNPDAHYIKGIIW 95

The following BLAST results are available for this feature:

BLAST of Spg022789 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891683.1	2.2e-23	65.22	putative F-box protein At1g67623 [Benincasa hispida]	[more]
XP_022957263.1	2.9e-23	67.42	F-box protein At2g35280-like [Cucurbita moschata]	[more]
KAG7031905.1	8.4e-23	66.29	putative F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6601105.1	1.1e-22	66.29	putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022957262.1	1.1e-22	66.29	putative F-box protein At1g67623 [Cucurbita moschata]	[more]

BLAST of Spg022789 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FXC7	3.1e-04	29.41	Putative F-box protein At1g67623 OS=Arabidopsis thaliana OX=3702 GN=At1g67623 PE...	[more]
Q1PEW8	4.1e-04	29.07	F-box protein At2g35280 OS=Arabidopsis thaliana OX=3702 GN=At2g35280 PE=2 SV=1	[more]

BLAST of Spg022789 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GZQ6	1.4e-23	67.42	F-box protein At2g35280-like OS=Cucurbita moschata OX=3662 GN=LOC111458703 PE=4 ...	[more]
A0A6J1GYN4	5.3e-23	66.29	putative F-box protein At1g67623 OS=Cucurbita moschata OX=3662 GN=LOC111458702 P...	[more]
A0A6J1H022	1.2e-22	65.91	putative F-box protein At1g67623 OS=Cucurbita moschata OX=3662 GN=LOC111458700 P...	[more]
A0A6J1JRX4	1.5e-22	63.04	putative F-box protein At1g67623 OS=Cucurbita maxima OX=3661 GN=LOC111487258 PE=...	[more]
A0A6J1JRV1	1.5e-22	63.04	putative F-box protein At1g67623 OS=Cucurbita maxima OX=3661 GN=LOC111487244 PE=...	[more]

BLAST of Spg022789 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74875.1	1.8e-07	32.89	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G67623.1	2.2e-05	29.41	F-box family protein	[more]
AT2G35280.1	2.9e-05	29.07	F-box family protein	[more]
AT3G30430.1	1.1e-04	27.91	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040338	Putative F-box protein At1g67623-like	PANTHER	PTHR33784	OS05G0482100 PROTEIN	coord: 8..92
None	No IPR available	PANTHER	PTHR33784:SF31	F-BOX PROTEIN	coord: 8..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg022789.1	Spg022789.1	mRNA