Spg022782 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg022782
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionbeta-glucosidase 12-like
Locationscaffold2: 11858354 .. 11858795 (+)
RNA-Seq ExpressionSpg022782
SyntenySpg022782
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTCTGTGTTTGGGGTGCTGAGTTCTGAAGTCTTAGTGTGTTCATCTTCTTCTTCTTCATTCTTTGCTCTTGAATCTAGTAAGTTTTCTCCAAAATTCTTCTTCTTTTTTGAATCTGCATGCTTGCTGGAATTAGAGTTAAAGAGAGAAAGCTTGATATTTTGTTTGATGGGTAATTGAAAGAGTAAAGTAGGATAGAGAGAAATTTTGGGCTAATTGATTGAATGGAAGACATGATGTTGACAACTCATGAAAGCACCCACGTGACTACCATTATAATTTTCTGTAAAAGTGGAAAGAAAAAAAGGCAATTTCAGAGCGGTTATACCGTAAGATTTGGCATATCAACTTTGTTGACTATAAAGATGGATCGAAAAGATACCCTAAAAGCTCAGCTCACTGGTTCAAGCGTTTCCTCAAACACTACATCATTTGGTGA

mRNA sequence

ATGAATTCTGTGTTTGGGGTGCTGAGTTCTGAAGTCTTAGTGTGTTCATCTTCTTCTTCTTCATTCTTTGCTCTTGAATCTAAGCGGTTATACCGTAAGATTTGGCATATCAACTTTGTTGACTATAAAGATGGATCGAAAAGATACCCTAAAAGCTCAGCTCACTGGTTCAAGCGTTTCCTCAAACACTACATCATTTGGTGA

Coding sequence (CDS)

ATGAATTCTGTGTTTGGGGTGCTGAGTTCTGAAGTCTTAGTGTGTTCATCTTCTTCTTCTTCATTCTTTGCTCTTGAATCTAAGCGGTTATACCGTAAGATTTGGCATATCAACTTTGTTGACTATAAAGATGGATCGAAAAGATACCCTAAAAGCTCAGCTCACTGGTTCAAGCGTTTCCTCAAACACTACATCATTTGGTGA

Protein sequence

MNSVFGVLSSEVLVCSSSSSSFFALESKRLYRKIWHINFVDYKDGSKRYPKSSAHWFKRFLKHYIIW
Homology
[Close]
BLAST of Spg022782 vs. NCBI nr
Match: XP_011660110.2 (beta-glucosidase 12 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 8.6e-06
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 0 

Query: 37  INFVDYKDGSKRYPKSSAHWFKRFLKH 64
           INFVDYKDG KRYPKSSAHWFK+FLKH
Sbjct: 507 INFVDYKDGFKRYPKSSAHWFKKFLKH 533

[Close]
BLAST of Spg022782 vs. NCBI nr
Match: KGN66450.1 (hypothetical protein Csa_006862 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 8.6e-06
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 0 

Query: 37  INFVDYKDGSKRYPKSSAHWFKRFLKH 64
           INFVDYKDG KRYPKSSAHWFK+FLKH
Sbjct: 489 INFVDYKDGFKRYPKSSAHWFKKFLKH 515

[Close]
BLAST of Spg022782 vs. NCBI nr
Match: XP_022154096.1 (beta-glucosidase 12-like [Momordica charantia])

HSP 1 Score: 58.5 bits (140), Expect = 2.5e-05
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 0 

Query: 37  INFVDYKDGSKRYPKSSAHWFKRFLKH 64
           INFVDYKDG+KRYPKSS +WFKRFLKH
Sbjct: 485 INFVDYKDGTKRYPKSSTYWFKRFLKH 511

[Close]
BLAST of Spg022782 vs. NCBI nr
Match: EOY32432.1 (Beta-glucosidase 17 isoform 1 [Theobroma cacao])

HSP 1 Score: 57.0 bits (136), Expect = 7.3e-05
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = 0 

Query: 37  INFVDYKDGSKRYPKSSAHWFKRFLKH 64
           INFVDYKDG KRYPK SAHWFK FLKH
Sbjct: 525 INFVDYKDGLKRYPKLSAHWFKNFLKH 551

[Close]
BLAST of Spg022782 vs. NCBI nr
Match: XP_007014814.1 (PREDICTED: beta-glucosidase 12 [Theobroma cacao] >EOY32433.1 Beta-glucosidase 17 isoform 2 [Theobroma cacao])

HSP 1 Score: 57.0 bits (136), Expect = 7.3e-05
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = 0 

Query: 37  INFVDYKDGSKRYPKSSAHWFKRFLKH 64
           INFVDYKDG KRYPK SAHWFK FLKH
Sbjct: 485 INFVDYKDGLKRYPKLSAHWFKNFLKH 511

[Close]
BLAST of Spg022782 vs. ExPASy Swiss-Prot
Match: B8AVF0 (Beta-glucosidase 12 OS=Oryza sativa subsp. indica OX=39946 GN=BGLU12 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.3e-06
Identity = 21/25 (84.00%), Postives = 23/25 (92.00%), Query Frame = 0 

Query: 37  INFVDYKDGSKRYPKSSAHWFKRFL 62
           INFVDY DG KRYPK+SAHWFK+FL
Sbjct: 484 INFVDYNDGRKRYPKNSAHWFKKFL 508

[Close]
BLAST of Spg022782 vs. ExPASy Swiss-Prot
Match: Q7XKV4 (Beta-glucosidase 12 OS=Oryza sativa subsp. japonica OX=39947 GN=BGLU12 PE=1 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 2.3e-06
Identity = 21/25 (84.00%), Postives = 23/25 (92.00%), Query Frame = 0 

Query: 37  INFVDYKDGSKRYPKSSAHWFKRFL 62
           INFVDY DG KRYPK+SAHWFK+FL
Sbjct: 484 INFVDYNDGRKRYPKNSAHWFKKFL 508

[Close]
BLAST of Spg022782 vs. ExPASy Swiss-Prot
Match: Q7XKV2 (Beta-glucosidase 13 OS=Oryza sativa subsp. japonica OX=39947 GN=BGLU13 PE=2 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 3.1e-06
Identity = 21/26 (80.77%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 37  INFVDYKDGSKRYPKSSAHWFKRFLK 63
           INFVDY DG+KRYPK SAHWFK FL+
Sbjct: 480 INFVDYNDGAKRYPKMSAHWFKEFLQ 505

[Close]
BLAST of Spg022782 vs. ExPASy Swiss-Prot
Match: Q7XKV5 (Beta-glucosidase 11 OS=Oryza sativa subsp. japonica OX=39947 GN=BGLU11 PE=3 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 2.0e-05
Identity = 20/26 (76.92%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 37  INFVDYKDGSKRYPKSSAHWFKRFLK 63
           INFVDY DG KRYPK+SA WFK+FL+
Sbjct: 484 INFVDYDDGMKRYPKNSARWFKKFLQ 509

[Close]
BLAST of Spg022782 vs. ExPASy Swiss-Prot
Match: Q7F9K4 (Beta-glucosidase 10 OS=Oryza sativa subsp. japonica OX=39947 GN=BGLU10 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 5.8e-05
Identity = 19/26 (73.08%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 37  INFVDYKDGSKRYPKSSAHWFKRFLK 63
           INFVDY +G KRYPK+SA WFK+FL+
Sbjct: 507 INFVDYDNGMKRYPKNSARWFKKFLR 532

[Close]
BLAST of Spg022782 vs. ExPASy TrEMBL
Match: A0A0A0LX61 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G611270 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.1e-06
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 0 

Query: 37  INFVDYKDGSKRYPKSSAHWFKRFLKH 64
           INFVDYKDG KRYPKSSAHWFK+FLKH
Sbjct: 489 INFVDYKDGFKRYPKSSAHWFKKFLKH 515

[Close]
BLAST of Spg022782 vs. ExPASy TrEMBL
Match: A0A6J1DMP4 (beta-glucosidase 12-like OS=Momordica charantia OX=3673 GN=LOC111021432 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-05
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 0 

Query: 37  INFVDYKDGSKRYPKSSAHWFKRFLKH 64
           INFVDYKDG+KRYPKSS +WFKRFLKH
Sbjct: 485 INFVDYKDGTKRYPKSSTYWFKRFLKH 511

[Close]
BLAST of Spg022782 vs. ExPASy TrEMBL
Match: A0A061GSN7 (Beta-glucosidase 17 isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_040351 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.5e-05
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = 0 

Query: 37  INFVDYKDGSKRYPKSSAHWFKRFLKH 64
           INFVDYKDG KRYPK SAHWFK FLKH
Sbjct: 485 INFVDYKDGLKRYPKLSAHWFKNFLKH 511

[Close]
BLAST of Spg022782 vs. ExPASy TrEMBL
Match: A0A061GTC9 (Beta-glucosidase 17 isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_040351 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.5e-05
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = 0 

Query: 37  INFVDYKDGSKRYPKSSAHWFKRFLKH 64
           INFVDYKDG KRYPK SAHWFK FLKH
Sbjct: 525 INFVDYKDGLKRYPKLSAHWFKNFLKH 551

[Close]
BLAST of Spg022782 vs. ExPASy TrEMBL
Match: A0A5A7UDM1 (Beta-glucosidase 12-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1371G00180 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.5e-05
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 0 

Query: 37  INFVDYKDGSKRYPKSSAHWFKRFLKH 64
           INFVDYKD  KRYPKSSAHWFK+FLKH
Sbjct: 410 INFVDYKDEFKRYPKSSAHWFKKFLKH 436

[Close]
BLAST of Spg022782 vs. TAIR 10
Match: AT5G36890.1 (beta glucosidase 42 )

HSP 1 Score: 43.5 bits (101), Expect = 7.7e-05
Identity = 18/32 (56.25%), Postives = 25/32 (78.12%), Query Frame = 0 

Query: 31  YRKIWHINFVDYKDGSKRYPKSSAHWFKRFLK 63
           Y K + + +VDYK+G  R+PKSSA+WF +FLK
Sbjct: 449 YTKRFGLVYVDYKNGLTRHPKSSAYWFMKFLK 480

[Close]
BLAST of Spg022782 vs. TAIR 10
Match: AT5G36890.2 (beta glucosidase 42 )

HSP 1 Score: 43.5 bits (101), Expect = 7.7e-05
Identity = 18/32 (56.25%), Postives = 25/32 (78.12%), Query Frame = 0 

Query: 31  YRKIWHINFVDYKDGSKRYPKSSAHWFKRFLK 63
           Y K + + +VDYK+G  R+PKSSA+WF +FLK
Sbjct: 449 YTKRFGLVYVDYKNGLTRHPKSSAYWFMKFLK 480

[Close]
BLAST of Spg022782 vs. TAIR 10
Match: AT1G26560.1 (beta glucosidase 40 )

HSP 1 Score: 42.0 bits (97), Expect = 2.2e-04
Identity = 17/31 (54.84%), Postives = 20/31 (64.52%), Query Frame = 0 

Query: 31  YRKIWHINFVDYKDGSKRYPKSSAHWFKRFL 62
           Y   + + FVDY+D  KRYPK S HWF  FL
Sbjct: 476 YSSRFGLYFVDYRDNLKRYPKDSVHWFTSFL 506

[Close]
BLAST of Spg022782 vs. TAIR 10
Match: AT3G60140.1 (Glycosyl hydrolase superfamily protein )

HSP 1 Score: 42.0 bits (97), Expect = 2.2e-04
Identity = 17/36 (47.22%), Postives = 24/36 (66.67%), Query Frame = 0 

Query: 31  YRKIWHINFVDYKDGSKRYPKSSAHWFKRFLKHYII 67
           Y   + + +VD+ +G KRYPK S  WFKRFLK  ++
Sbjct: 472 YTARFGLYYVDFVNGLKRYPKDSVKWFKRFLKKSVV 507

[Close]
BLAST of Spg022782 vs. TAIR 10
Match: AT2G44450.1 (beta glucosidase 15 )

HSP 1 Score: 40.8 bits (94), Expect = 5.0e-04
Identity = 15/23 (65.22%), Postives = 19/23 (82.61%), Query Frame = 0 

Query: 39  FVDYKDGSKRYPKSSAHWFKRFL 62
           +VD+KDG KRYPK SA WF++ L
Sbjct: 478 YVDFKDGCKRYPKKSAEWFRKLL 500

The following BLAST results are available for this feature:
BLAST of Spg022782 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011660110.28.6e-0692.59beta-glucosidase 12 [Cucumis sativus][more]
KGN66450.18.6e-0692.59hypothetical protein Csa_006862 [Cucumis sativus][more]
XP_022154096.12.5e-0588.89beta-glucosidase 12-like [Momordica charantia][more]
EOY32432.17.3e-0588.89Beta-glucosidase 17 isoform 1 [Theobroma cacao][more]
XP_007014814.17.3e-0588.89PREDICTED: beta-glucosidase 12 [Theobroma cacao] >EOY32433.1 Beta-glucosidase 17... [more]
BLAST of Spg022782 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
B8AVF02.3e-0684.00Beta-glucosidase 12 OS=Oryza sativa subsp. indica OX=39946 GN=BGLU12 PE=3 SV=1[more]
Q7XKV42.3e-0684.00Beta-glucosidase 12 OS=Oryza sativa subsp. japonica OX=39947 GN=BGLU12 PE=1 SV=2[more]
Q7XKV23.1e-0680.77Beta-glucosidase 13 OS=Oryza sativa subsp. japonica OX=39947 GN=BGLU13 PE=2 SV=2[more]
Q7XKV52.0e-0576.92Beta-glucosidase 11 OS=Oryza sativa subsp. japonica OX=39947 GN=BGLU11 PE=3 SV=2[more]
Q7F9K45.8e-0573.08Beta-glucosidase 10 OS=Oryza sativa subsp. japonica OX=39947 GN=BGLU10 PE=2 SV=1[more]
BLAST of Spg022782 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LX614.1e-0692.59Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G611270 PE=3 SV=1[more]
A0A6J1DMP41.2e-0588.89beta-glucosidase 12-like OS=Momordica charantia OX=3673 GN=LOC111021432 PE=3 SV=... [more]
A0A061GSN73.5e-0588.89Beta-glucosidase 17 isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_040351 PE=3 SV=1[more]
A0A061GTC93.5e-0588.89Beta-glucosidase 17 isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_040351 PE=3 SV=1[more]
A0A5A7UDM13.5e-0588.89Beta-glucosidase 12-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
BLAST of Spg022782 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G36890.17.7e-0556.25beta glucosidase 42 [more]
AT5G36890.27.7e-0556.25beta glucosidase 42 [more]
AT1G26560.12.2e-0454.84beta glucosidase 40 [more]
AT3G60140.12.2e-0447.22Glycosyl hydrolase superfamily protein [more]
AT2G44450.15.0e-0465.22beta glucosidase 15 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.20.20.80Glycosidasescoord: 21..66
e-value: 1.3E-5
score: 25.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg022782.1Spg022782.1mRNA