Spg022677 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTAGTATATAATTTTTAAATATATTATCAAACACATTTCAAAATTATTTTTAAATCTACAACTCTTTTCGTTGCATTCATCTTTTCAAACTTAACCCACTTTTAATAATTTTAATTTTAATTAACTTCTTCCTTAATCCTTCCTGTCAGAAAATTTTCAACAAAAAAAAAAAAAAAAAAAGATCTTTCCTTTCAGAGAAATAAATATTAAAAAAACAGAAAAACCATTCCGTCTTTCATTTGTTCGCGCGTAATGCTCCCTTTTCTTTTCTGCTCGCCGCGCTCGCCCGAAAGATAGGTTTCTTCTTCTCTCACAACTCTTCCGATCGCCGACTGCAAGAACAATATCTCGTTTGCTTTGTAGAAAGTACTGTTAATCTATAACTATGGTTGAAAAATCTTCCCGTTCGTCATCTACTCTCGTTGATCAGCCAGTTGTAAGTTCAAAATCAATCTCATCTGTCCGTCTTCCCTTTTCTTTTTTCCTGTTCGATGTTCTAGGGCTTGTAAATGAATTGCAGTATTCGGATATCTTTACTGGAATGTCGATTGTTTAGGTTCCTGGAGATGTGGTCCTCGACCTCTCAAACATGGCCAACGAGACCATCAAGCTTGGAGGCGGTCTTCGACAGGTGTCTGTTAGGGTTTTTGTTTCCAATGTTTATGCATCTCCATTTACGTTTCTGCCCCCATCTTCCACAACCACCAGTTTCCCCATCGATTTTAAATGTAGTTTTCATAATTTTTTGACCCGACATTCAAATGTATTTCGAATATCGTTTAGGTTTCGGCAATCGAAGTTCGCATTGTTGCATTTGTACTTGTATTGATTACGGGATCGTTTACCTTCATGTTGTTTTATCTTTCAGGACCATGATGCTATTTCTGTCTCGAAAGTTGGAAATCTGAGGTTCTCGAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGGTCAGTAAATGACTTTGTTCAATTGACTATGGGGATTCTTATATTAATTGCTCTTTCAGCTAATTTTTGAATTGTGAACTTCAACGCTAGTTTCGGTGGTTTTCTTCAATTGAATTGACTACCAATATCATTCTCGTGTTTAGTTTTAATAAAATGTGCTATTTTCCAGTATGTGCCATGTGCAGAAGATTGTGTACTTGGAATAGTGGTCGACTCTAGAGCCGATGTAAGTGCTGCTTTGTTGTTTAAATATGTTTATGTTCAATTATATTCATAAAAGAAAATGTTTATGTTCAATTAAGAAATAATTGGGTACTGCTGTTTCTGATTGTTATGCGTGGATGGTTTGACTGGTATCCATGTCTTATGATACCAAGGAAGATTTTTGTTCGATTTCCTTGTGAGCTCTCATCTTATAATTCTTGTTTTCACATTGTTTGCAGAATTTTCTTGTTGACATAAAAGGTCCTGCATTGGCCTTTCTTCCTGTTCTTGCATTTGAAGGAGGAACAAGGCGAAACATACCCAAATTTGAGGTGTGTATAATTTTTTGTGCTATTTTCACCACATGTCCTTTTGGTACAGTTGCTCCTCGGTCTTCCTTCTTTAGAAGTTTTGATACTTTGTCAATTAATTTGTTATCCGTTTTTTCTTCTTCTTCCATTTTTTTGGGTGCTGGTAACAAATATTATTTACATATCAGTAAAAAGGTGTATTCTTTTACCTTTTGAATTTGGCTTTTCTCTTATTTGCAATCTACTTATACTAACTCTGGGAGATATGTGCCAAGTGTATTTGGTCCAAATTAACATGTTTAACCATTCTCCTTAAAACATGTCCTATTGATTCTCTGTTTTGTAGATGGGTGCCCTGCTTTATGTACGGGTAGTGAAGGTAAACCCTGGTATGAATCCTGAGTTGGCATGCACTGATGGTTAGTTAATTCCTTCCTCTCTCAGCGTCCAATAATTTGCTTGAAGGTTGAAACAGTCAATCAAAGAAATATATTGATGTTGCTGTGAACTCATCCTCTTAAGATGGGTGGGCAGGGCCTGTATACTTTATGCAAGTTCATGTTTCTTTTCAGTTTTTAGTTGTTGTGATTGACATGGAGTATATCTCATGTGAGTATCATTTTGCTTGATACAGCCAGCGGGAAAGCAGCTGGATTTGGCCTCCTAAAGGATGGTTACATGTTTGAATGTTCAACTGGCTTATCAAGAATGTAAGCTGCCCCCCCCCCCTCTCTCTCTCTCTCTCTCAAGTCAATCTTCTGATCATTCATTCACATTGTTGATTTTATCCTATCTTCTAGGCTTCTAAGCTCGCCAACATGTCCAGTTCTTGAATCTTTTGGGAAGAAGCTTTCATTTGAGACAGCAGTTGGTATAAATGGCCGTGTTTGGGTAATATTTCGCCTTAGATTTTTGTTGGTACACTCAATAGTTTACTCTGTAAAATTCTCTTTCCATGCAAATAATAAAAGTAAAAAGTAGGACTGAGTTGAGTTAAAGTCATCGTGATCACGTACCTAAGCTTTAATATCCCACGAGTTACCTTGACAATCGAATATAGTAGGGTCAAACGGTTGTCTCCGTTTCATGAGAATAGTTGAGATGCGCACAAGCTGATAAAAAAAAAAAAAAAAACTCTTCCTCTGATTTCTTCTAACGCATATTAACCTTCGAAAACTGTCCTGATCTGGCAGTATTTTAGATTGTTGAAATTATTCTCCATTCTTGACACTGCCCTTGGCACCTCTAACGTAACCGTTTGACATTTGAAGATGTAATTTCTTCTATCAAATTTACTGATAAATAGACTTTCGCATGTCTATTTCCAGGTCAATGCTGATTCTCCGTCCACAACCATCGTTGTCTCAAATGCAATAATGAACTCGGAAACTCTCACTGGGGTCCAACAGAGAATCATGGTGGACAAACTTCTTAATAATTTAAAGCTGTCAAGTTAGTCTTGTAAACTTCAGAGTCATAATTTTTTGTTTGTTAAATTACATTTCTAGTTATGTATCATTTTAGCTCATGGGTTTTACGAATGAGTTATTATTAGTCAATTCTTTTTTCCTCTCTGATCAAAATTGAAAATTACTGATTCAATTATATTCATTAACCT ATGGTTGAAAAATCTTCCCGTTCGTCATCTACTCTCGTTGATCAGCCAGTTGTTCCTGGAGATGTGGTCCTCGACCTCTCAAACATGGCCAACGAGACCATCAAGCTTGGAGGCGGTCTTCGACAGGACCATGATGCTATTTCTGTCTCGAAAGTTGGAAATCTGAGGTTCTCGAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTATGTGCCATGTGCAGAAGATTGTGTACTTGGAATAGTGGTCGACTCTAGAGCCGATAATTTTCTTGTTGACATAAAAGGTCCTGCATTGGCCTTTCTTCCTGTTCTTGCATTTGAAGGAGGAACAAGGCGAAACATACCCAAATTTGAGATGGGTGCCCTGCTTTATGTACGGGTAGTGAAGGTAAACCCTGGTATGAATCCTGAGTTGGCATGCACTGATGCCAGCGGGAAAGCAGCTGGATTTGGCCTCCTAAAGGATGGTTACATGTTTGAATGTTCAACTGGCTTATCAAGAATGCTTCTAAGCTCGCCAACATGTCCAGTTCTTGAATCTTTTGGGAAGAAGCTTTCATTTGAGACAGCAGTTGGTATAAATGGCCGTGTTTGGGTCAATGCTGATTCTCCGTCCACAACCATCGTTGTCTCAAATGCAATAATGAACTCGGAAACTCTCACTGGGGTCCAACAGAGAATCATGGTGGACAAACTTCTTAATAATTTAAAGCTGTCAAGTTAG ATGGTTGAAAAATCTTCCCGTTCGTCATCTACTCTCGTTGATCAGCCAGTTGTTCCTGGAGATGTGGTCCTCGACCTCTCAAACATGGCCAACGAGACCATCAAGCTTGGAGGCGGTCTTCGACAGGACCATGATGCTATTTCTGTCTCGAAAGTTGGAAATCTGAGGTTCTCGAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTATGTGCCATGTGCAGAAGATTGTGTACTTGGAATAGTGGTCGACTCTAGAGCCGATAATTTTCTTGTTGACATAAAAGGTCCTGCATTGGCCTTTCTTCCTGTTCTTGCATTTGAAGGAGGAACAAGGCGAAACATACCCAAATTTGAGATGGGTGCCCTGCTTTATGTACGGGTAGTGAAGGTAAACCCTGGTATGAATCCTGAGTTGGCATGCACTGATGCCAGCGGGAAAGCAGCTGGATTTGGCCTCCTAAAGGATGGTTACATGTTTGAATGTTCAACTGGCTTATCAAGAATGCTTCTAAGCTCGCCAACATGTCCAGTTCTTGAATCTTTTGGGAAGAAGCTTTCATTTGAGACAGCAGTTGGTATAAATGGCCGTGTTTGGGTCAATGCTGATTCTCCGTCCACAACCATCGTTGTCTCAAATGCAATAATGAACTCGGAAACTCTCACTGGGGTCCAACAGAGAATCATGGTGGACAAACTTCTTAATAATTTAAAGCTGTCAAGTTAG MVEKSSRSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGNLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLLNNLKLSS Homology
BLAST of Spg022677 vs. NCBI nr
Match: KAG6589448.1 (Protein KINESIN LIGHT CHAIN-RELATED 3, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 471.5 bits (1212), Expect = 4.5e-129 Identity = 236/243 (97.12%), Postives = 239/243 (98.35%), Query Frame = 0
BLAST of Spg022677 vs. NCBI nr
Match: KAG7023129.1 (putative exosome complex component rrp40, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 471.5 bits (1212), Expect = 4.5e-129 Identity = 236/243 (97.12%), Postives = 239/243 (98.35%), Query Frame = 0
BLAST of Spg022677 vs. NCBI nr
Match: XP_022921727.1 (putative exosome complex component rrp40 [Cucurbita moschata]) HSP 1 Score: 470.7 bits (1210), Expect = 7.6e-129 Identity = 235/243 (96.71%), Postives = 239/243 (98.35%), Query Frame = 0
BLAST of Spg022677 vs. NCBI nr
Match: XP_023515767.1 (putative exosome complex component rrp40 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 468.4 bits (1204), Expect = 3.8e-128 Identity = 234/243 (96.30%), Postives = 238/243 (97.94%), Query Frame = 0
BLAST of Spg022677 vs. NCBI nr
Match: XP_022988424.1 (putative exosome complex component rrp40 [Cucurbita maxima]) HSP 1 Score: 466.1 bits (1198), Expect = 1.9e-127 Identity = 232/243 (95.47%), Postives = 238/243 (97.94%), Query Frame = 0
BLAST of Spg022677 vs. ExPASy Swiss-Prot
Match: Q7KWX9 (Putative exosome complex component rrp40 OS=Dictyostelium discoideum OX=44689 GN=exosc3 PE=3 SV=1) HSP 1 Score: 187.6 bits (475), Expect = 1.7e-46 Identity = 101/228 (44.30%), Postives = 137/228 (60.09%), Query Frame = 0
BLAST of Spg022677 vs. ExPASy Swiss-Prot
Match: Q8IPX7 (Exosome complex component RRP40 OS=Drosophila melanogaster OX=7227 GN=Rrp40 PE=1 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 2.6e-39 Identity = 86/224 (38.39%), Postives = 132/224 (58.93%), Query Frame = 0
BLAST of Spg022677 vs. ExPASy Swiss-Prot
Match: Q3T0E1 (Exosome complex component RRP40 OS=Bos taurus OX=9913 GN=EXOSC3 PE=2 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 4.9e-38 Identity = 91/257 (35.41%), Postives = 140/257 (54.47%), Query Frame = 0
BLAST of Spg022677 vs. ExPASy Swiss-Prot
Match: Q9NQT5 (Exosome complex component RRP40 OS=Homo sapiens OX=9606 GN=EXOSC3 PE=1 SV=3) HSP 1 Score: 155.2 bits (391), Expect = 9.3e-37 Identity = 90/257 (35.02%), Postives = 141/257 (54.86%), Query Frame = 0
BLAST of Spg022677 vs. ExPASy Swiss-Prot
Match: Q7TQK4 (Exosome complex component RRP40 OS=Mus musculus OX=10090 GN=Exosc3 PE=1 SV=3) HSP 1 Score: 154.8 bits (390), Expect = 1.2e-36 Identity = 82/205 (40.00%), Postives = 122/205 (59.51%), Query Frame = 0
BLAST of Spg022677 vs. ExPASy TrEMBL
Match: A0A6J1E1A1 (Ribosomal RNA-processing protein 40 OS=Cucurbita moschata OX=3662 GN=LOC111429887 PE=3 SV=1) HSP 1 Score: 470.7 bits (1210), Expect = 3.7e-129 Identity = 235/243 (96.71%), Postives = 239/243 (98.35%), Query Frame = 0
BLAST of Spg022677 vs. ExPASy TrEMBL
Match: A0A6J1JLH7 (Ribosomal RNA-processing protein 40 OS=Cucurbita maxima OX=3661 GN=LOC111485670 PE=3 SV=1) HSP 1 Score: 466.1 bits (1198), Expect = 9.1e-128 Identity = 232/243 (95.47%), Postives = 238/243 (97.94%), Query Frame = 0
BLAST of Spg022677 vs. ExPASy TrEMBL
Match: A0A6J1ECW1 (Ribosomal RNA-processing protein 40 OS=Cucurbita moschata OX=3662 GN=LOC111433176 PE=3 SV=1) HSP 1 Score: 461.1 bits (1185), Expect = 2.9e-126 Identity = 231/243 (95.06%), Postives = 237/243 (97.53%), Query Frame = 0
BLAST of Spg022677 vs. ExPASy TrEMBL
Match: A0A6J1I8H3 (Ribosomal RNA-processing protein 40 OS=Cucurbita maxima OX=3661 GN=LOC111471933 PE=3 SV=1) HSP 1 Score: 459.9 bits (1182), Expect = 6.5e-126 Identity = 230/243 (94.65%), Postives = 236/243 (97.12%), Query Frame = 0
BLAST of Spg022677 vs. ExPASy TrEMBL
Match: A0A0A0LP58 (Ribosomal RNA-processing protein 40 OS=Cucumis sativus OX=3659 GN=Csa_1G004950 PE=3 SV=1) HSP 1 Score: 458.0 bits (1177), Expect = 2.5e-125 Identity = 230/243 (94.65%), Postives = 236/243 (97.12%), Query Frame = 0
BLAST of Spg022677 vs. TAIR 10
Match: AT4G32175.1 (PNAS-3 related ) HSP 1 Score: 347.8 bits (891), Expect = 6.9e-96 Identity = 174/236 (73.73%), Postives = 201/236 (85.17%), Query Frame = 0
BLAST of Spg022677 vs. TAIR 10
Match: AT2G25355.1 (PNAS-3 related ) HSP 1 Score: 347.1 bits (889), Expect = 1.2e-95 Identity = 169/234 (72.22%), Postives = 194/234 (82.91%), Query Frame = 0
BLAST of Spg022677 vs. TAIR 10
Match: AT2G25355.2 (PNAS-3 related ) HSP 1 Score: 315.5 bits (807), Expect = 3.8e-86 Identity = 152/211 (72.04%), Postives = 174/211 (82.46%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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