Spg022674 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg022674
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCoiled-coil domain-containing protein 9-like
Locationscaffold2: 7309365 .. 7310853 (-)
RNA-Seq ExpressionSpg022674
SyntenySpg022674
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCTATATGCCTCTTCAGCTCTAAAACCCTAGCGTTACCGTCGGCGGCCTACCTACCCATATCTTCATCATCTACGAGCCATAGTTGCTGTTTTGGTGTCTGCAGATGCTCTTTCCCAAACAGGCCAATTTCGACTTCTAATTTGATCATTGGAAGAAGAAGAACGGGGAGGCAGGTGGTTCGAATGGCCCCCGAGGAAGAGAAGCTTACTCGTCGCAATCCTCTCGATTTCCCAATTGTAACTTTCTCTTTCTTGCTCTCGTTTATTTTCTTTGCGTGTTTGATGTTCTCCGGCTTGTTATGGAGTTCTTCTTCATGGGATTTTAGTGTCTTTGCTTCCTATTGATGGAGATTATGCTTTCCGCTTTTATGTAGCTTGGGTAGTGTGTTGTTAGATCAGTTAGGGTGGATAACTGGAGCATTTCCTAGAATTTTATGTATTTATTGTTAAATTTTTATCTTTGAAGGTTGTTTAAAAGCCTTATTCATGTATTCTCTTGCGTGCCATGTTTTTCCTGCGAATTGTATCTGTCTGATTGTTTCGGCCATTTCTACATTTTCCATGGGAAGTATCCATCCTCGAGCGCTATAGAAAGTGGGCTCTGTCTGTCTGTGGACGAGGGGCATCCATCATCATAATGTTTGCCTATTCATATTGTCACAGATTTTGTGAGAATGGGCCTTAGTTTTGTGGATTCCATTGGCTGCTAAACTGTTGATAAATTACATTCAATTTGTAGCCTCGATATTTCTGCACCGTATCTGTGATAATTCTAGTCGTTTGTATTCTTGCACTGGGTTAATGCTTAGTGCACTCAGCACTGTAGTTGTTAAACTGATTGAAAGAAGATATTGGCAATCCTCACGAATGTTTGTTACGTAATTTAATAGTTTATATAGGGTACTTTGCCTTTTGCAGTTTTGGGGGTGTGTGGATCATAGTGGATGTCATGACATTTATATAAGGCGTGATACCTGTTTGTTCAATTTGTTTCCAGCTCTGCTGCCGGGTTTCTACTTTCTACTTCTAATGTGTCTGGAAAATAAACCTGATATCATTAGGTTATTTGTAAATTTATTATGACTTCTTTGCAATGGTGCGTTTTTTGGTGGTCAATTCATTTTTAAGATGAGATTGTTGATGTTTTTACCTGACAAACTAAGTTATATATATATATATATATATGAAATACCTGACAAACTAAGTTTGGTTAGTAAAATATTCATGTATGAAGTGCTTGAGGAGGTTATAGCTGGTGTTTCTTTGGATTGAATGCTTCTTGACTGTTTGGTTGCAGGAGTGGGAGAGGCCTAAGCCAGGACGTAGACCAGATATCTTTCCTCAGTTTAGCCCAATGAAAACACCATTGCCACCACCATTGCCATGTGATCCCCCTGAAGAAGATGAGGAGGAGGAAGAGAAGAAAGAGGAAGAAGAGGAAAATCCAGACAAGGAAAATCCAGATGAGCCTGAGAAGCCGTAG

mRNA sequence

ATGGCGTCTATATGCCTCTTCAGCTCTAAAACCCTAGCGTTACCGTCGGCGGCCTACCTACCCATATCTTCATCATCTACGAGCCATAGTTGCTTTCTTCTTCATGGGATTTTAGTGTCTTTGCTTCCTATTGATGGAGATTATGCTTTCCGCTTTTATGTAGCTTGGGAGTGGGAGAGGCCTAAGCCAGGACGTAGACCAGATATCTTTCCTCAGTTTAGCCCAATGAAAACACCATTGCCACCACCATTGCCATGTGATCCCCCTGAAGAAGATGAGGAGGAGGAAGAGAAGAAAGAGGAAGAAGAGGAAAATCCAGACAAGGAAAATCCAGATGAGCCTGAGAAGCCGTAG

Coding sequence (CDS)

ATGGCGTCTATATGCCTCTTCAGCTCTAAAACCCTAGCGTTACCGTCGGCGGCCTACCTACCCATATCTTCATCATCTACGAGCCATAGTTGCTTTCTTCTTCATGGGATTTTAGTGTCTTTGCTTCCTATTGATGGAGATTATGCTTTCCGCTTTTATGTAGCTTGGGAGTGGGAGAGGCCTAAGCCAGGACGTAGACCAGATATCTTTCCTCAGTTTAGCCCAATGAAAACACCATTGCCACCACCATTGCCATGTGATCCCCCTGAAGAAGATGAGGAGGAGGAAGAGAAGAAAGAGGAAGAAGAGGAAAATCCAGACAAGGAAAATCCAGATGAGCCTGAGAAGCCGTAG

Protein sequence

MASICLFSSKTLALPSAAYLPISSSSTSHSCFLLHGILVSLLPIDGDYAFRFYVAWEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEEEKKEEEEENPDKENPDEPEKP
Homology
[Close]
BLAST of Spg022674 vs. NCBI nr
Match: XP_022987895.1 (uncharacterized protein LOC111485300 isoform X1 [Cucurbita maxima])

HSP 1 Score: 146.0 bits (367), Expect = 2.1e-31
Identity = 97/141 (68.79%), Postives = 97/141 (68.79%), Query Frame = 0 

Query: 1   MASICLFSSKTLALPSAAYLPISSSSTSHSC--------FLLHGILVSLLPIDGDYAFRF 60
           MASICL SSKTLALPSAAYLPISSSSTSHSC        F    I  S L I      R 
Sbjct: 1   MASICLLSSKTLALPSAAYLPISSSSTSHSCCFGGCRFSFPNKPIPTSNLIIVRRRTGRH 60

Query: 61  YVAW-----------------EWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 117
            V                   EWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE
Sbjct: 61  VVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120

[Close]
BLAST of Spg022674 vs. NCBI nr
Match: XP_023530781.1 (uncharacterized protein LOC111793229 [Cucurbita pepo subsp. pepo] >KAG6587954.1 hypothetical protein SDJN03_16519, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021844.1 hypothetical protein SDJN02_15572 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.4 bits (363), Expect = 6.0e-31
Identity = 92/142 (64.79%), Postives = 101/142 (71.13%), Query Frame = 0 

Query: 1   MASICLFSSKTLALPSAAYLPISSSSTSHSCFLLHG------------------------ 60
           MASICLFSSKTL LPSAAYLP+SSSSTSHS F + G                        
Sbjct: 1   MASICLFSSKTLVLPSAAYLPVSSSSTSHS-FCVRGCRCSFPNRPIANSNLIIGRRRTGR 60

Query: 61  ILVSLLPIDGDYAFRFYVAW--EWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 117
           ++V + P +     R  + +  EW+RPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE
Sbjct: 61  LVVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 120

[Close]
BLAST of Spg022674 vs. NCBI nr
Match: XP_022145037.1 (uncharacterized protein LOC111014560 [Momordica charantia])

HSP 1 Score: 141.7 bits (356), Expect = 3.9e-30
Identity = 93/140 (66.43%), Postives = 99/140 (70.71%), Query Frame = 0 

Query: 1   MASICLFSSKTLALPSAAYLPISSSSTSHSC-----------------FLLHG------I 60
           MASICLFSSKTLALPSA YL ISSSSTSHSC                  L+ G       
Sbjct: 1   MASICLFSSKTLALPSAVYLHISSSSTSHSCSFGNCRCSFPYKPVSNSHLVIGRRRTGKQ 60

Query: 61  LVSLLPIDGDYAFRFYVAW--EWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 116
           +V + P +     R  + +  EWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE
Sbjct: 61  VVRMAPDEEKLTRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120

[Close]
BLAST of Spg022674 vs. NCBI nr
Match: XP_022933792.1 (uncharacterized protein LOC111441100 [Cucurbita moschata])

HSP 1 Score: 141.7 bits (356), Expect = 3.9e-30
Identity = 91/142 (64.08%), Postives = 100/142 (70.42%), Query Frame = 0 

Query: 1   MASICLFSSKTLALPSAAYLPISSSSTSHSCFLLHG------------------------ 60
           MASIC FSSKTL LPSAAYLP+SSSSTSHS F + G                        
Sbjct: 1   MASICPFSSKTLVLPSAAYLPVSSSSTSHS-FCVRGCRCSFPNRPIANSNLIIGRRRTGR 60

Query: 61  ILVSLLPIDGDYAFRFYVAW--EWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 117
           ++V + P +     R  + +  EW+RPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE
Sbjct: 61  LVVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 120

[Close]
BLAST of Spg022674 vs. NCBI nr
Match: XP_022965880.1 (uncharacterized protein LOC111465629 [Cucurbita maxima])

HSP 1 Score: 141.4 bits (355), Expect = 5.1e-30
Identity = 91/142 (64.08%), Postives = 100/142 (70.42%), Query Frame = 0 

Query: 1   MASICLFSSKTLALPSAAYLPISSSSTSHSCFLLHG------------------------ 60
           MASICLFSSKTL LPSAAYL +SSSSTSHS F + G                        
Sbjct: 1   MASICLFSSKTLVLPSAAYLQVSSSSTSHS-FCVRGCRCSFPNRPIANSNLIIGKRRTGR 60

Query: 61  ILVSLLPIDGDYAFRFYVAW--EWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 117
           ++V + P +     R  + +  EW+RPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE
Sbjct: 61  LVVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 120

[Close]
BLAST of Spg022674 vs. ExPASy TrEMBL
Match: A0A6J1JI28 (uncharacterized protein LOC111485300 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485300 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.0e-31
Identity = 97/141 (68.79%), Postives = 97/141 (68.79%), Query Frame = 0 

Query: 1   MASICLFSSKTLALPSAAYLPISSSSTSHSC--------FLLHGILVSLLPIDGDYAFRF 60
           MASICL SSKTLALPSAAYLPISSSSTSHSC        F    I  S L I      R 
Sbjct: 1   MASICLLSSKTLALPSAAYLPISSSSTSHSCCFGGCRFSFPNKPIPTSNLIIVRRRTGRH 60

Query: 61  YVAW-----------------EWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 117
            V                   EWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE
Sbjct: 61  VVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120

[Close]
BLAST of Spg022674 vs. ExPASy TrEMBL
Match: A0A6J1CVD6 (uncharacterized protein LOC111014560 OS=Momordica charantia OX=3673 GN=LOC111014560 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.9e-30
Identity = 93/140 (66.43%), Postives = 99/140 (70.71%), Query Frame = 0 

Query: 1   MASICLFSSKTLALPSAAYLPISSSSTSHSC-----------------FLLHG------I 60
           MASICLFSSKTLALPSA YL ISSSSTSHSC                  L+ G       
Sbjct: 1   MASICLFSSKTLALPSAVYLHISSSSTSHSCSFGNCRCSFPYKPVSNSHLVIGRRRTGKQ 60

Query: 61  LVSLLPIDGDYAFRFYVAW--EWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 116
           +V + P +     R  + +  EWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE
Sbjct: 61  VVRMAPDEEKLTRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120

[Close]
BLAST of Spg022674 vs. ExPASy TrEMBL
Match: A0A6J1F0T5 (uncharacterized protein LOC111441100 OS=Cucurbita moschata OX=3662 GN=LOC111441100 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.9e-30
Identity = 91/142 (64.08%), Postives = 100/142 (70.42%), Query Frame = 0 

Query: 1   MASICLFSSKTLALPSAAYLPISSSSTSHSCFLLHG------------------------ 60
           MASIC FSSKTL LPSAAYLP+SSSSTSHS F + G                        
Sbjct: 1   MASICPFSSKTLVLPSAAYLPVSSSSTSHS-FCVRGCRCSFPNRPIANSNLIIGRRRTGR 60

Query: 61  ILVSLLPIDGDYAFRFYVAW--EWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 117
           ++V + P +     R  + +  EW+RPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE
Sbjct: 61  LVVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 120

[Close]
BLAST of Spg022674 vs. ExPASy TrEMBL
Match: A0A6J1HQ01 (uncharacterized protein LOC111465629 OS=Cucurbita maxima OX=3661 GN=LOC111465629 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.5e-30
Identity = 91/142 (64.08%), Postives = 100/142 (70.42%), Query Frame = 0 

Query: 1   MASICLFSSKTLALPSAAYLPISSSSTSHSCFLLHG------------------------ 60
           MASICLFSSKTL LPSAAYL +SSSSTSHS F + G                        
Sbjct: 1   MASICLFSSKTLVLPSAAYLQVSSSSTSHS-FCVRGCRCSFPNRPIANSNLIIGKRRTGR 60

Query: 61  ILVSLLPIDGDYAFRFYVAW--EWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 117
           ++V + P +     R  + +  EW+RPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE
Sbjct: 61  LVVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 120

[Close]
BLAST of Spg022674 vs. ExPASy TrEMBL
Match: A0A6J1HA36 (uncharacterized protein LOC111461515 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461515 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.2e-29
Identity = 94/142 (66.20%), Postives = 96/142 (67.61%), Query Frame = 0 

Query: 1   MASICLFSSKTLALPSAAYLPI-SSSSTSHSC--------FLLHGILVSLLPIDGDYAFR 60
           MASICL SSKTL LPSAAYLPI SSSST+HSC        F    I  S L +      R
Sbjct: 1   MASICLLSSKTLVLPSAAYLPISSSSSTTHSCCFGGCRFSFPSKPISTSNLIVVRRRTGR 60

Query: 61  FYVAW-----------------EWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 117
             V                   EWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE
Sbjct: 61  HVVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 120

[Close]
BLAST of Spg022674 vs. TAIR 10
Match: AT2G17240.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24506.1); Has 2795 Blast hits to 943 proteins in 155 species: Archae - 0; Bacteria - 388; Metazoa - 809; Fungi - 72; Plants - 153; Viruses - 54; Other Eukaryotes - 1319 (source: NCBI BLink). )

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-20
Identity = 52/60 (86.67%), Postives = 57/60 (95.00%), Query Frame = 0 

Query: 57  EWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEEEKKEEEEENPDKENPDEPEK 116
           EWERPKPGRRPDIFP+FSPMKTPLPPP+P DPPEEDEEEEEKKEEEEENPD+E  ++PEK
Sbjct: 79  EWERPKPGRRPDIFPKFSPMKTPLPPPMPYDPPEEDEEEEEKKEEEEENPDQEEEEQPEK 138

[Close]
BLAST of Spg022674 vs. TAIR 10
Match: AT3G24506.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17240.1); Has 4864 Blast hits to 709 proteins in 125 species: Archae - 0; Bacteria - 592; Metazoa - 786; Fungi - 33; Plants - 410; Viruses - 61; Other Eukaryotes - 2982 (source: NCBI BLink). )

HSP 1 Score: 85.1 bits (209), Expect = 4.0e-17
Identity = 47/60 (78.33%), Postives = 57/60 (95.00%), Query Frame = 0 

Query: 57  EWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEEEKKEEE-EENPDKENPDEPE 116
           EWERPKPGRRPDIFP+FSPMK+PLPPP+P DPPEE+EEEEEKKEEE E++P+KE+ D+P+
Sbjct: 87  EWERPKPGRRPDIFPKFSPMKSPLPPPMPYDPPEEEEEEEEKKEEETEDDPEKEDEDQPD 146

The following BLAST results are available for this feature:
BLAST of Spg022674 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022987895.12.1e-3168.79uncharacterized protein LOC111485300 isoform X1 [Cucurbita maxima][more]
XP_023530781.16.0e-3164.79uncharacterized protein LOC111793229 [Cucurbita pepo subsp. pepo] >KAG6587954.1 ... [more]
XP_022145037.13.9e-3066.43uncharacterized protein LOC111014560 [Momordica charantia][more]
XP_022933792.13.9e-3064.08uncharacterized protein LOC111441100 [Cucurbita moschata][more]
XP_022965880.15.1e-3064.08uncharacterized protein LOC111465629 [Cucurbita maxima][more]
BLAST of Spg022674 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg022674 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JI281.0e-3168.79uncharacterized protein LOC111485300 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1CVD61.9e-3066.43uncharacterized protein LOC111014560 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A6J1F0T51.9e-3064.08uncharacterized protein LOC111441100 OS=Cucurbita moschata OX=3662 GN=LOC1114411... [more]
A0A6J1HQ012.5e-3064.08uncharacterized protein LOC111465629 OS=Cucurbita maxima OX=3661 GN=LOC111465629... [more]
A0A6J1HA361.2e-2966.20uncharacterized protein LOC111461515 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
BLAST of Spg022674 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G17240.11.8e-2086.67unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G24506.14.0e-1778.33unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..109
NoneNo IPR availablePANTHERPTHR35713ARGININE/SERINE-RICH-LIKE SPLICING FACTORcoord: 56..115
NoneNo IPR availablePANTHERPTHR35713:SF4SUBFAMILY NOT NAMEDcoord: 56..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg022674.1Spg022674.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032259 methylation
molecular_function GO:0008168 methyltransferase activity