Spg022579 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg022579
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	homeobox-leucine zipper protein ATHB-6-like
Location	scaffold2: 4409050 .. 4409490 (+)
RNA-Seq Expression	Spg022579
Synteny	Spg022579

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACTCTCCATCAGGACAATCAACCTCTCCTCAAAGAGGTACAATTACCCAGTTTTTTCTTTTCACGAACATCGGGAATGTGATGATATTGATGGAGACTGTAAAATTGTGTTTGCAGATTCGGGAACTGAAAGCGAAGCTTCAAGAGATAACCTAGAGAGCAATCTTTCGATGGAGGAAGAGATGGTGGTGCCGGCCGATTCTGAGAATTCTCTGATTGAACAAGTAAAGCCGATAATTGCAGATCAGTTCTCTGTTCCTCCGGCGAGTGAATCCCAAGACTTCAATTACGAGAGCTTCAACAACAATGGCGGAGAAGGGGAAGAGGCGCCGACGGAAGAGGCGTCATTGTTCCCCGATTTCAAAGATGGGTCATCCGATAGCGATTCGAGCGCAATTTTGAACGAAGATTACAGCCCCACGGCGGCCATTCTCTGA

mRNA sequence

ATGAAACTCTCCATCAGGACAATCAACCTCTCCTCAAAGAGGTACAATTACCCAGTTTTTTCTTTTCACGAACATCGGGAATGTGATGATATTGATGGAGACTGTAAAATTGTGTTTGCAGATTCGGGAACTGAAAGCGAAGCTTCAAGAGATAACCTAGAGAGCAATCTTTCGATGGAGGAAGAGATGGTGGTGCCGGCCGATTCTGAGAATTCTCTGATTGAACAAGTAAAGCCGATAATTGCAGATCAGTTCTCTGTTCCTCCGGCGAGTGAATCCCAAGACTTCAATTACGAGAGCTTCAACAACAATGGCGGAGAAGGGGAAGAGGCGCCGACGGAAGAGGCGTCATTGTTCCCCGATTTCAAAGATGGGTCATCCGATAGCGATTCGAGCGCAATTTTGAACGAAGATTACAGCCCCACGGCGGCCATTCTCTGA

Coding sequence (CDS)

ATGAAACTCTCCATCAGGACAATCAACCTCTCCTCAAAGAGGTACAATTACCCAGTTTTTTCTTTTCACGAACATCGGGAATGTGATGATATTGATGGAGACTGTAAAATTGTGTTTGCAGATTCGGGAACTGAAAGCGAAGCTTCAAGAGATAACCTAGAGAGCAATCTTTCGATGGAGGAAGAGATGGTGGTGCCGGCCGATTCTGAGAATTCTCTGATTGAACAAGTAAAGCCGATAATTGCAGATCAGTTCTCTGTTCCTCCGGCGAGTGAATCCCAAGACTTCAATTACGAGAGCTTCAACAACAATGGCGGAGAAGGGGAAGAGGCGCCGACGGAAGAGGCGTCATTGTTCCCCGATTTCAAAGATGGGTCATCCGATAGCGATTCGAGCGCAATTTTGAACGAAGATTACAGCCCCACGGCGGCCATTCTCTGA

Protein sequence

MKLSIRTINLSSKRYNYPVFSFHEHRECDDIDGDCKIVFADSGTESEASRDNLESNLSMEEEMVVPADSENSLIEQVKPIIADQFSVPPASESQDFNYESFNNNGGEGEEAPTEEASLFPDFKDGSSDSDSSAILNEDYSPTAAIL

Homology

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BLAST of Spg022579 vs. NCBI nr
Match: XP_038905018.1 (homeobox-leucine zipper protein ATHB-6-like [Benincasa hispida])

HSP 1 Score: 151.8 bits (382), Expect = 4.7e-33
Identity = 82/102 (80.39%), Postives = 90/102 (88.24%), Query Frame = 0


Query: 45  ESEASRDNLESNLSMEEEMVVPADSENSLIEQVKPII-ADQFSVPPASESQDFNYESFNN 104
           +++   DN ESNLS+EEEMVV A+SEN+ IEQ KP I  DQFSVPPASESQDFNYESFN+
Sbjct: 155 KTKLQEDNSESNLSVEEEMVVAANSENAPIEQTKPEIGGDQFSVPPASESQDFNYESFNS 214

Query: 105 NGGEGEEAPTEEASLFPDFKDGSSDSDSSAILNEDYSPTAAI 146
           NGGEGEEAP EEA+LFPDFKDGSSDSDSSAILNEDYSPTA I
Sbjct: 215 NGGEGEEAPMEEATLFPDFKDGSSDSDSSAILNEDYSPTAGI 256

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BLAST of Spg022579 vs. NCBI nr
Match: XP_022136962.1 (homeobox-leucine zipper protein ATHB-6-like [Momordica charantia])

HSP 1 Score: 138.7 bits (348), Expect = 4.1e-29
Identity = 77/102 (75.49%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 45  ESEASRDNLESNLSMEEEMVV-PADSENSLIEQVKPIIADQFSVPPASESQDFNYESFNN 104
           +S+   DN ESN+S+EEEMV+  ADSEN+LIE+ +P   D FSVPPA+E +D NYESFNN
Sbjct: 153 KSKLQEDNSESNVSVEEEMVLAAADSENALIEKTEPETGD-FSVPPATELKDLNYESFNN 212

Query: 105 NGGEGEEAPTEEASLFPDFKDGSSDSDSSAILNEDYSPTAAI 146
           NGGEGEE PTEEASLFPDFKDGSSDSDSSAILNEDYS TAAI
Sbjct: 213 NGGEGEEVPTEEASLFPDFKDGSSDSDSSAILNEDYSSTAAI 253

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BLAST of Spg022579 vs. NCBI nr
Match: XP_022999792.1 (homeobox-leucine zipper protein ATHB-6-like [Cucurbita maxima])

HSP 1 Score: 138.7 bits (348), Expect = 4.1e-29
Identity = 75/101 (74.26%), Postives = 83/101 (82.18%), Query Frame = 0


Query: 45  ESEASRDNLESNLSMEEEMVVPADSENSLIEQVKPIIADQFSVPPASESQDFNYESFNNN 104
           + +   DN +SNLS+EEEM VPADSEN+LIEQ+KP I DQFSVP A+ESQDFNYES +NN
Sbjct: 149 KKKLQEDNSQSNLSVEEEMTVPADSENALIEQMKPEITDQFSVPLATESQDFNYESLHNN 208

Query: 105 GGEGEEAPTEEASLFPDFKDGSSDSDSSAILNEDYSPTAAI 146
           GGEG     EE SLFPDFKDGSSDSDSSAILNEDY PT AI
Sbjct: 209 GGEG-----EEVSLFPDFKDGSSDSDSSAILNEDYGPTVAI 244

[Close]

BLAST of Spg022579 vs. NCBI nr
Match: XP_023547219.1 (homeobox-leucine zipper protein ATHB-6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 137.5 bits (345), Expect = 9.2e-29
Identity = 74/101 (73.27%), Postives = 83/101 (82.18%), Query Frame = 0


Query: 45  ESEASRDNLESNLSMEEEMVVPADSENSLIEQVKPIIADQFSVPPASESQDFNYESFNNN 104
           + +   DN ESNLS+EEEM VPADSEN+LIEQ+KP I DQFSVP A+E+QDFNYES ++N
Sbjct: 149 KKKLQEDNSESNLSVEEEMTVPADSENALIEQIKPEITDQFSVPLATETQDFNYESLHSN 208

Query: 105 GGEGEEAPTEEASLFPDFKDGSSDSDSSAILNEDYSPTAAI 146
           GGEG     EE SLFPDFKDGSSDSDSSAILNEDY PT AI
Sbjct: 209 GGEG-----EEVSLFPDFKDGSSDSDSSAILNEDYGPTVAI 244

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BLAST of Spg022579 vs. NCBI nr
Match: KAG7031308.1 (Homeobox-leucine zipper protein ATHB-6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.0 bits (341), Expect = 2.7e-28
Identity = 74/101 (73.27%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 45  ESEASRDNLESNLSMEEEMVVPADSENSLIEQVKPIIADQFSVPPASESQDFNYESFNNN 104
           + +   DN ESNLS+EEE  VPADSEN+LIEQ+KP I DQFSVP A+ESQDFNY S +NN
Sbjct: 149 KKKLQEDNSESNLSVEEETTVPADSENALIEQIKPEITDQFSVPLATESQDFNYASLHNN 208

Query: 105 GGEGEEAPTEEASLFPDFKDGSSDSDSSAILNEDYSPTAAI 146
           GGEG     EE SLFPDFKDGSSDSDSSAILNEDY PT AI
Sbjct: 209 GGEG-----EEVSLFPDFKDGSSDSDSSAILNEDYGPTVAI 244

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BLAST of Spg022579 vs. ExPASy TrEMBL
Match: A0A6J1KBS4 (homeobox-leucine zipper protein ATHB-6-like OS=Cucurbita maxima OX=3661 GN=LOC111494034 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.0e-29
Identity = 75/101 (74.26%), Postives = 83/101 (82.18%), Query Frame = 0


Query: 45  ESEASRDNLESNLSMEEEMVVPADSENSLIEQVKPIIADQFSVPPASESQDFNYESFNNN 104
           + +   DN +SNLS+EEEM VPADSEN+LIEQ+KP I DQFSVP A+ESQDFNYES +NN
Sbjct: 149 KKKLQEDNSQSNLSVEEEMTVPADSENALIEQMKPEITDQFSVPLATESQDFNYESLHNN 208

Query: 105 GGEGEEAPTEEASLFPDFKDGSSDSDSSAILNEDYSPTAAI 146
           GGEG     EE SLFPDFKDGSSDSDSSAILNEDY PT AI
Sbjct: 209 GGEG-----EEVSLFPDFKDGSSDSDSSAILNEDYGPTVAI 244

[Close]

BLAST of Spg022579 vs. ExPASy TrEMBL
Match: A0A6J1C6W4 (homeobox-leucine zipper protein ATHB-6-like OS=Momordica charantia OX=3673 GN=LOC111008527 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.0e-29
Identity = 77/102 (75.49%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 45  ESEASRDNLESNLSMEEEMVV-PADSENSLIEQVKPIIADQFSVPPASESQDFNYESFNN 104
           +S+   DN ESN+S+EEEMV+  ADSEN+LIE+ +P   D FSVPPA+E +D NYESFNN
Sbjct: 153 KSKLQEDNSESNVSVEEEMVLAAADSENALIEKTEPETGD-FSVPPATELKDLNYESFNN 212

Query: 105 NGGEGEEAPTEEASLFPDFKDGSSDSDSSAILNEDYSPTAAI 146
           NGGEGEE PTEEASLFPDFKDGSSDSDSSAILNEDYS TAAI
Sbjct: 213 NGGEGEEVPTEEASLFPDFKDGSSDSDSSAILNEDYSSTAAI 253

[Close]

BLAST of Spg022579 vs. ExPASy TrEMBL
Match: A0A6J1FNC9 (homeobox-leucine zipper protein ATHB-6-like OS=Cucurbita moschata OX=3662 GN=LOC111447026 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.2e-28
Identity = 74/101 (73.27%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 45  ESEASRDNLESNLSMEEEMVVPADSENSLIEQVKPIIADQFSVPPASESQDFNYESFNNN 104
           + +   DN ESNLS+EEE  VPADSEN+LIEQ+KP I DQFSVP A+ESQDFNY S +NN
Sbjct: 149 KKKLQEDNSESNLSVEEETSVPADSENALIEQIKPEITDQFSVPLATESQDFNYASLHNN 208

Query: 105 GGEGEEAPTEEASLFPDFKDGSSDSDSSAILNEDYSPTAAI 146
           GGEG     EE SLFPDFKDGSSDSDSSAILNEDY PT AI
Sbjct: 209 GGEG-----EEVSLFPDFKDGSSDSDSSAILNEDYGPTVAI 244

[Close]

BLAST of Spg022579 vs. ExPASy TrEMBL
Match: A0A6J1ENE6 (homeobox-leucine zipper protein ATHB-6-like OS=Cucurbita moschata OX=3662 GN=LOC111436078 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 6.7e-17
Identity = 56/84 (66.67%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 62  EMVVPADSENSLIEQVKPIIADQFSVPPASESQDFNYESFNNNGGEGEEAPTEEASLFPD 121
           EM+VPADSEN+LIEQ KP I D FSVPPA         SFNNNGGEG+E PT        
Sbjct: 157 EMLVPADSENALIEQTKPEITDDFSVPPA--------RSFNNNGGEGDEPPT-------- 216

Query: 122 FKDGSSDSDSSAILNEDYSPTAAI 146
            KDGSSDSDSSAILNEDYSPTA +
Sbjct: 217 -KDGSSDSDSSAILNEDYSPTAGV 223

[Close]

BLAST of Spg022579 vs. ExPASy TrEMBL
Match: A0A6J1JAW1 (homeobox-leucine zipper protein ATHB-6-like OS=Cucurbita maxima OX=3661 GN=LOC111482818 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.9e-16
Identity = 55/84 (65.48%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 62  EMVVPADSENSLIEQVKPIIADQFSVPPASESQDFNYESFNNNGGEGEEAPTEEASLFPD 121
           EM+ PADSEN+LIEQ KP I D FSVPPA         SFNNNGGEG+E PT        
Sbjct: 157 EMLAPADSENALIEQTKPEITDDFSVPPA--------RSFNNNGGEGDEPPT-------- 216

Query: 122 FKDGSSDSDSSAILNEDYSPTAAI 146
            KDGSSDSDSSAILNEDYSPTA +
Sbjct: 217 -KDGSSDSDSSAILNEDYSPTAGV 223

The following BLAST results are available for this feature:

BLAST of Spg022579 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905018.1	4.7e-33	80.39	homeobox-leucine zipper protein ATHB-6-like [Benincasa hispida]	[more]
XP_022136962.1	4.1e-29	75.49	homeobox-leucine zipper protein ATHB-6-like [Momordica charantia]	[more]
XP_022999792.1	4.1e-29	74.26	homeobox-leucine zipper protein ATHB-6-like [Cucurbita maxima]	[more]
XP_023547219.1	9.2e-29	73.27	homeobox-leucine zipper protein ATHB-6-like [Cucurbita pepo subsp. pepo]	[more]
KAG7031308.1	2.7e-28	73.27	Homeobox-leucine zipper protein ATHB-6 [Cucurbita argyrosperma subsp. argyrosper...	[more]

BLAST of Spg022579 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg022579 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KBS4	2.0e-29	74.26	homeobox-leucine zipper protein ATHB-6-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1C6W4	2.0e-29	75.49	homeobox-leucine zipper protein ATHB-6-like OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1FNC9	2.2e-28	73.27	homeobox-leucine zipper protein ATHB-6-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1ENE6	6.7e-17	66.67	homeobox-leucine zipper protein ATHB-6-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1JAW1	1.9e-16	65.48	homeobox-leucine zipper protein ATHB-6-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of Spg022579 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..146
None	No IPR available	PANTHER	PTHR24326:SF589	HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE	coord: 49..145
None	No IPR available	PANTHER	PTHR24326	HOMEOBOX-LEUCINE ZIPPER PROTEIN	coord: 49..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg022579.1	Spg022579.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0043565	sequence-specific DNA binding