Spg022468 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg022468
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	39S ribosomal protein L47, mitochondrial
Location	scaffold2: 5446834 .. 5453706 (+)
RNA-Seq Expression	Spg022468
Synteny	Spg022468

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAATTGCTGTTGAGCGCTTTAGTTCTTGTTAGATTAATTATATCGTTTTGGAGTGATTTGTGGGCTCTAATTACAAGGGTGGAGTGGCAAATAATTTTCCAACGCCCACATGATTGTTTGAATAATGGGAGCTTGAAAATTAATATTACTTAAGACAAATTGATTGGTCCACGAACCACTTTTGTCAATACGTGTAAAAGCCTCCTTTGAGAATATACACATCACCTTTCTTAATAAATACTTTACCTACTTAACTTTGTCCTTTTCTTTATTATTATTGTTCTCTTTTTTTCTTTTTGTGGCCCACACCCAATTTCAATTTATAGTGTAATTATTTCTAAATTGATCTTACTTTATGAACTTCAAATCAAATCACAATCTTAATTATGGAATTGGGATTAGAATTGAGATTTGCAAAATTTTACTATAATTTTTTTTTCAATCACTTTGCCAATTTGGTTTCGTAGTTAGTGTCATTATGTAGATAGTATGTGATGTAATTATTTTGTCTTCGTGTCCATTTTAGGAGAGTTGAGCTTGATTGAGTTTATTATATAGTTAAAAGGAGCGAAGAGAAGATTTTTGTTTAGGTAAGAGGGAGGAAGATGTTTAAACTAGTTGCCATCTGGCTGATTTTCTTATTATCTTATTTTTGCACATCGTCACTATAGTTACTTTTGTCAGGACGTCAAGAAATCTTTGTATTATTCTTTTTGTACATCGCTTTCACTTGATTAATTGAATTTGAACTAGCTTGGAAGATTATACAGACGTACTAAATGAAAAAACAGTGTTAGATTTATTGTATCGAAAATCAAATTGAAGGATGACGATGAAAAAGATAACTTTTTGTTTTTTTAAATAAAAAAGATTACTATTTTTATTTTCTTTTGTGCAAGCATGTGCTTTTGAAGAGAACTTTCTCTAAAGTTCAAAAGAATACTAATTTTTGTAGGGAAGTCAATCTTGTCTTTTTAACACCAAACTTGTAGAATATGGTTTCATAAAACTCGGAATAGAAAATCAGTCAGTTGATTTCCACGAACTCAATCCGATCTTAGTCAGTTTCATACTTAGTATTAGTCGAATTAAGAAATTGAATTAAACATCAACTTTCAATTGCTCTTAAATCAATAGACACTCTCATATTAATTCAATTTTGACCAAAACCCAATTGAATTGAATCAAGTTATCAACCTTCTCATAACTCTACCATCTCTCATTGGATCAACATCTCAAATTTAGATTTTGATGACAAAATCAATTATAAAAAGACAATAAAATTGATGACTTTATGAATGATAATTGAAAATAATCAAACAATACATTGGAAAGTATAAGAAAGAAGTGGGCCCAAATTGAAGGAGGAGGGAAATGGAAAAAGGATAAATAAAGAAGAAAGGAATAAATAAATAAATAAAACAAAGGGAGAAAAAAGAGGTGGAAGTGGAAGTGGAAGTAGCTTTCAAATTCATAGAAGAAGGGGCACACCACCCAAGCCAGGGTGGGACCACCCTACTTTTGCAAATTCTGTGCCTCTTTTTTAGGGCTCCTTCTTTCCCTTTTTGCCCTTTTCCAATCCAAAACCTCATTCTTTTGCCTTTGCCTTTACTTTAGTGGGATGAGGGATATACCCTAATTTTTAGGGTTTTCAAAAGAATCTACCTTTTACCTTCAAATTCCATCCCTCCCTTCCTCTTCCCAATTTCAATTCTTTGCCTTTTATATCCACTCCTCAGCTCTCTCAAACATTATCTTTCCAAAACATTCATTTTTGGTTTTTATTTCTTTTCAATCTCCTCGAGATTGCGTATTTCAAGTTCTGGATTAGACTTCTATTTAGTCATGGTTGTTAAAAGCATTAAGAAAAAAACCTGACGGGAAGTGACATGTCCATTAGACGAGTTTTGGTTGTATCGGTAAAATGTAGCAAAAGTTGGATAGACAAATTGACATGTTATGTCAGTGTTTTGTTATTGACAGAGACTAAATGGAAACACAATTTAAAGTTTAAGAATGTAACTGAAAGTTTTTAAAGCCCGAAGACTAAATAGATGTAATGCTTGTTTGGAGTGATTTTTGGGTGGATAAAAAAATTAAAATATTTATTTGAATCAAAAGAGTAATAGGAAGTTACATGTAAAGTGGATAATAACTAGAGAGGTTAAATGACATTCTCAATTGGGCCTATATTAAAATGATAAGAAAAGCCCACTTGCTATTTCTGGCCCTTGTGTTACTAATTGAGTTCCAAGTAAGCCCATTAAATTTGACAAAAAGCCCAATTCTAATGAAAACGGGCCAATAGGTCCAATACCAACACATTCCTTTTGGGCTTGGTGGATCTCGGCGGTTCAGAACAAATTGGGCTTGGATCTTTGAAAAAGCCCACTAATTCTCAACAATTTAATTTTAGTTTTTTTTTTTTTTAATATTTGTCAAAAAAAAAAAGAAAAAAAAGAAAAGAAAAGAAAAAGCTGTCGGTATTTTACATATTGCCCTCAGTCCTCAGTTCCCTCGCACTTCGCAGACCTTCGTCGCCGCTCACTCGCCGGAGCGCAGATCGTTGCCGCTTGCCGGAGCCAAGCCTCTTTGAGCCTTCGCAGTTCACAATCTATCCCATCTGGGTTCAGTCCGTCGCATTGTGGTACGGCCGCAACCTTCAGAATCAGAGGTGAGTGATCTTGATTTCCGAGTCATTTTGGGACCGAAGTAGTTTTCCTGTGTTGTTCTTCAGCACCAGTCACTGATGATTTAGCCCTTCACGCCTTATGATTGACGATTAACTCCCTCTCTGGTTTCTGATTAGTGATTATAGACTCATATGCCCCTCTCTGCTTGGATTAGATGCGAATTTTCAGTTTGACGTGGGCTTCATCTCCGCATAACCTTAACTTTAGGACCTTTATATCATTATTTCATTTGAAATGGAACGATCTGAATTTGTATTTTTATTCTTCTTGCTTCATTTCCATACTTTTTAAACTTTTTGGTGAATTTGTTGATAGAAAAAACATGAGCGAACAGGACAGGAATTTTGATGGCGGACTTGGTAAAATAATTTTCATATAAAGAGCAGGAGCGAACCGTTGGAATGAGTGAAAGAACTGATTCTGTAGGATATGTTGGTTTGTGGTTATTAGTTCGCTCGTTTTCTCTCTCTGGGTCAAACTGATATGTGAGTTATGCTTTTGGGTTCCATTGCATGCATGTCTTCTTACTTGTCAGACGAGAGGCAGCTCAAGAACTTAGGGAGAGAAATAGAGCAATGAACCAATTTGGATTAAGGGTTCTGTTTGATTCAGTTCTTTAGTGTTGGGTTGCTTGTTTTGGTTTAGTTTATTTCCAAGATTAAATCAATCGTTTTAAAGGATTTTATTGAAAATTGAATTAAACCAAACCAAATTTATATACACCCCTAATTGTTAGGGTTCTAGGAAGCATAGATCCAAAGTTGGCATTTCGTTTTGAGATTACTTATTTTTGTTGCGTTTGCATTGTATTTAGTCTCACTGTTTTAGTCTTTGGATTCAAGCAGCATTGGTGCAGCCATGTTTCTGACACGAGTGTTTGGGAGAACATTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGCAGCAGCTGCTGCTGCTTCTACAGCCAGGACAGGGTATAATCCACTCGAGGAGTTTTTTGAGGCAGAGAGAAGTCCAGACGACGACAAACCTGTTGTATATGGTATATTATATTTTTTTTCCCCTCGAGCTTTGGTCTTTGTTAGCAACCTATATGTTTGTATTTTGGTTCATTCATTTTGAAGAATTTGTCTCAAGATATTGTTCTTCGGGGATGCAAATTTATACCTGGGTGCCTGGTCCAATGTAGTGAAATTTGAACTTGAAGTTATTGAGGGTCCACTCACTCATGGGAATGAATACAAATTGATCAGATACAACCACTGCACTAAAAGAAAATACCCTCCTTGTCGTGCATGGAGTCTCAATGCATCTTTTGAGATAACAAAGATTACTTGGTGCAGTTCAAATAATTGGTCACTGGGACTGCGGATTCTGCATCATTGATAAAACATAACAAATGTGATATGATTTTATGTTACTGGATTTTAAATGACATAATTGGTGCAAATGAGTAATTACAGATGAATATGATAGACTGATTAGACCGTTAAAGTCTAACACTTAGGAGACACCAAAGTGCTCCCTCAGGCCCCAAGAATATATATTTAGTTTCATCATAGTTTACATAGAATAGTGTTCTTCCTTCTTTGTTTTCTTTGAAAACGTGGTGGTCTGTAAAATACCTTATTGGTTGCAAAGTGAAAATAGGAGCAAGGACTTTACATAGGTGTAGGCAGCCATGATTATGTCTGATCTATCTGCATATCTTCTATACCTGTCTGCTGTCAGTGGTTTCTTATTGCTGAAACTGTGTTATGTGCGCCATGTGATCATCCCTAAAAAATTTAATGTGCCCTTTTGATTTTTTTTTTTGGATTTTTTTTTGGATTTTTTTTGTTATAAATTGTTCTGTGTGTGGTTGCACATGTGATATGAGTGTTTTCTAAATGTTTTAATTTGGTGTCTATTTGTGTGGTTACTCTCTTCAAATGAAGTTGTGGTTGTGGTTCTGGAAAATGCTTGCTCTTTTTCAAGGGGGTATTTTATTTAAGGATTTTAGATGCATACTTTCCTCATGTCAATTATCAGACTTGATCTTCGCACCAAGTTGCCATATATATATATATACCCTACTTCTGAGGAATAAAGATGTCTCTTAAAAGTTGAAACAATCAAAATCAAAGAATGTAATGGAAAATTTCATGAGATTTGGAAGGTTCTCCCTCTTGGTAGGTCATCTATATAGGATAGGAATATCCTTAAAGTTGTTTTACTCTAATGTTATAGGCTTAGATACTTGTGTGAGACCCGGATGCCCATGGATGACAAATGAATCCTCATAGTTTGGTGGCCACTCTCATGAGATATTTTTATCTTATGAATTTCACGACATATAATTCTGTACGATTAGCTCATGGACACAGATTATTCTGGATGCTTTACTTGCAAGTAGAAAAGGCCCTGGTAGCTTGGAAATTTTCTTCAGTATGTGACGATTAAACAACCGTGGGCCAAAAGACAATATTTACCTTACTTGAAAATTGGAAGGGAGGAAATAGCCCCTTCATTAGAAGTTAGAAAGAATCCTTTAGAATCTCATGGCTGAGATTTTGCGCTTTCTTCAAAAAACGTTGTTGAGATTCTCATTGCAATTTCTATGCTGTCAGGTCGAAGTTGGAAGGCTTCAGAACTACGGCTTAAGTCTTGGGACGATCTCAATAAGCTATGGTATGTCCTGTTGAAGGAGAAAAATATGTTGATGACACAGCGCCAGATGCTTAATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCATTCCCAAGGTAAACTTGCTTTCTATGTTTTGTTGTATTTGTTCCCTTCTTCTCCTGCTCCTTCAGTTGTGTGATCATAGAGCTGTTAATAGCTCTCCTTTCACTACTTTTCTATTCTAATGTTGATGGTGGTTGCTGATGATTGTAATTTAGGTGAGGAAGTCAATGTGTCGAATCAAGCAAGTACTTACCGAGAGAGCCATCGAAGAACCAGATCCTCGGAGATCTGGAGAGATGAAGAGGATGATAAATGCTCTGTGATAAGCGAACCAGTGTTTCAGAGTCAGAGCTTTAGATGCAGTGGAGATTATCATCTCGGTTATGAAGGGAGGAAGAGTTAGCGAGATAATGCATGTCTGATGGCGAATGACAATCATGCAACGGCCCTGGCAATTCAGTTCATTCTGTAATCAAGGATCTAATTAAGAAGCCTAGAAATTGTTTAATGATTTCTAATCTAGTTTTTATCAACGGTAATCAAAGTTTTGGAGATGTTTTTATTTGTGCCAACATTATGATGGCCAAGTTTATTCTAGAAGATTTGGAATACACACTAGAGATCTGATGTGTGTGGAGTAAGTTGAAAATGAAAGAGTTGACAAAAAAAAAAAAAAAAAAAAAAAAAAGGGAAAAAGAAAAGGAAAATATTTGATGCTTTGATGTGCTGTTGGGAAAATGAAAGTATGTCATGAATGTTAGGAGGACCATAAACACAAAGGTAGAATGTGTGTTGATGCTTTGGCTTTGATGATCCTGTGCAGTCGCTCATTCCAATTCTATTCCCTACACAAGGGGGCAAAGCCACATGATTGGATTAGACATGTTGCTTTTTGATTAGCTTCTTAATCAAGATTGTTTATTCATGAGGGCAAAGAGAGGGGTCCCACCTTCTTTCTTTCCTCCTTCTTCTTCAATGAGTTCCAATCGAGATCCGCCACGTGGCGAGATCTGATTGGAGAGATGTAAACAAACTCACTCACTCAGTGAGATTGATTAATATTGCGTCACCCTTAAAAATAGTAATGTGTGTTGGAACAGCTCAAGACAACCTTAACCTCTTGCCATGGGAAATTTTTTACATGATGGATTTTGCTGACAGGCAGAGGGCCAAGCGTCACCGGCTGGGTAACCCAATCACCCCACCCACCCTCACTCCGGAAGGGAAAGTGCCCGAAACGGAAAGGGGTTGTGGGTCCCACGTAATGACGAAATCAGGCAGCGAAGGGCCTTGGATTGAATGTCAGAGCCACCAAAAAGAACGCAGTTGAGTAATTAAAATGAAAAGTCAAAATTGAGAAATTAATTAATTAAAAAAAAAAAAAAGAGAAGCATTTAGAGGCACGTTCTACAAAATCACTTGGGACCGAGGGGTGGGGGAGTTGCATCACCGCCATGTTTATTTATCATTTACTCACCCCGAACTGCCCGATCTGCCC

mRNA sequence

ATGTCAATTGCTGTTGAGCGCTTTATCCTCAGTTCCCTCGCACTTCGCAGACCTTCGTCGCCGCTCACTCGCCGGAGCGCAGATCGTTGCCGCTTGCCGGAGCCAAGCCTCTTTGAGCCTTCGCAGTTCACAATCTATCCCATCTGGGTTCAGTCCGTCGCATTGTGGTACGGCCGCAACCTTCAGAATCAGAGCATTGGTGCAGCCATGTTTCTGACACGAGTGTTTGGGAGAACATTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGCAGCAGCTGCTGCTGCTTCTACAGCCAGGACAGGGTATAATCCACTCGAGGAGTTTTTTGAGGCAGAGAGAAGTCCAGACGACGACAAACCTGTTGTATATGGCTTAGATACTTGTGTGAGACCCGGATGCCCATGGATGACAAATGAATCCTCATACTCATGGACACAGATTATTCTGGATGCTTTACTTGCAAGTAGAAAAGGCCCTGGTAGCTTGGAAATTTTCTTCAGTCGAAGTTGGAAGGCTTCAGAACTACGGCTTAAGTCTTGGGACGATCTCAATAAGCTATGGTATGTCCTGTTGAAGGAGAAAAATATGTTGATGACACAGCGCCAGATGCTTAATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCATTCCCAAGGTGAGGAAGTCAATGTGTCGAATCAAGCAAGTACTTACCGAGAGAGCCATCGAAGAACCAGATCCTCGGAGATCTGGAGAGATGAAGAGGATGATAAATGCTCTGTGA

Coding sequence (CDS)

ATGTCAATTGCTGTTGAGCGCTTTATCCTCAGTTCCCTCGCACTTCGCAGACCTTCGTCGCCGCTCACTCGCCGGAGCGCAGATCGTTGCCGCTTGCCGGAGCCAAGCCTCTTTGAGCCTTCGCAGTTCACAATCTATCCCATCTGGGTTCAGTCCGTCGCATTGTGGTACGGCCGCAACCTTCAGAATCAGAGCATTGGTGCAGCCATGTTTCTGACACGAGTGTTTGGGAGAACATTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGCAGCAGCTGCTGCTGCTTCTACAGCCAGGACAGGGTATAATCCACTCGAGGAGTTTTTTGAGGCAGAGAGAAGTCCAGACGACGACAAACCTGTTGTATATGGCTTAGATACTTGTGTGAGACCCGGATGCCCATGGATGACAAATGAATCCTCATACTCATGGACACAGATTATTCTGGATGCTTTACTTGCAAGTAGAAAAGGCCCTGGTAGCTTGGAAATTTTCTTCAGTCGAAGTTGGAAGGCTTCAGAACTACGGCTTAAGTCTTGGGACGATCTCAATAAGCTATGGTATGTCCTGTTGAAGGAGAAAAATATGTTGATGACACAGCGCCAGATGCTTAATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCATTCCCAAGGTGAGGAAGTCAATGTGTCGAATCAAGCAAGTACTTACCGAGAGAGCCATCGAAGAACCAGATCCTCGGAGATCTGGAGAGATGAAGAGGATGATAAATGCTCTGTGA

Protein sequence

MSIAVERFILSSLALRRPSSPLTRRSADRCRLPEPSLFEPSQFTIYPIWVQSVALWYGRNLQNQSIGAAMFLTRVFGRTFLAAARSETSSAAAAAASTARTGYNPLEEFFEAERSPDDDKPVVYGLDTCVRPGCPWMTNESSYSWTQIILDALLASRKGPGSLEIFFSRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAIEEPDPRRSGEMKRMINAL

Homology

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BLAST of Spg022468 vs. NCBI nr
Match: XP_038879389.1 (39S ribosomal protein L47, mitochondrial [Benincasa hispida] >XP_038879390.1 39S ribosomal protein L47, mitochondrial [Benincasa hispida])

HSP 1 Score: 246.9 bits (629), Expect = 1.9e-61
Identity = 136/186 (73.12%), Postives = 139/186 (74.73%), Query Frame = 0


Query: 70  MFLTRVFGRTFLAAARSETSSAAAAAASTARTGYNPLEEFFEAERSPDDDKPVVYGLDTC 129
           MFLTRVFGRTFLAAARSETSSA  AAA+TAR GYNPLEEFFEA+RSPDDDKPVVYG    
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATGAAAATARMGYNPLEEFFEADRSPDDDKPVVYG---- 60

Query: 130 VRPGCPWMTNESSYSWTQIILDALLASRKGPGSLEIFFSRSWKASELRLKSWDDLNKLWY 189
                                                  RSWKASELRLKSWDDLNKLWY
Sbjct: 61  ---------------------------------------RSWKASELRLKSWDDLNKLWY 120

Query: 190 VLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAIEEPDPRRSGEMK 249
           VLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAI+EPDPRRS EMK
Sbjct: 121 VLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAIDEPDPRRSAEMK 143

Query: 250 RMINAL 256
           RMINAL
Sbjct: 181 RMINAL 143

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BLAST of Spg022468 vs. NCBI nr
Match: XP_004138121.1 (39S ribosomal protein L47, mitochondrial [Cucumis sativus] >KGN63602.1 hypothetical protein Csa_013761 [Cucumis sativus])

HSP 1 Score: 245.0 bits (624), Expect = 7.1e-61
Identity = 135/186 (72.58%), Postives = 139/186 (74.73%), Query Frame = 0


Query: 70  MFLTRVFGRTFLAAARSETSSAAAAAASTARTGYNPLEEFFEAERSPDDDKPVVYGLDTC 129
           MFLTRVFGRTFLAAARSETSSA AAAA+TARTGYNPLEEFFEA+RSPDD KPVVYG    
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYG---- 60

Query: 130 VRPGCPWMTNESSYSWTQIILDALLASRKGPGSLEIFFSRSWKASELRLKSWDDLNKLWY 189
                                                  RSWKASELRLKSWDDLNKLWY
Sbjct: 61  ---------------------------------------RSWKASELRLKSWDDLNKLWY 120

Query: 190 VLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAIEEPDPRRSGEMK 249
           VLLKEKNMLMTQRQMLNAQNL+FPNPERIPKVRKSMCRIK VLTERAI+EPDPRRS EMK
Sbjct: 121 VLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMK 143

Query: 250 RMINAL 256
           RMINAL
Sbjct: 181 RMINAL 143

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BLAST of Spg022468 vs. NCBI nr
Match: XP_008453113.1 (PREDICTED: 39S ribosomal protein L47, mitochondrial [Cucumis melo])

HSP 1 Score: 243.0 bits (619), Expect = 2.7e-60
Identity = 135/186 (72.58%), Postives = 138/186 (74.19%), Query Frame = 0


Query: 70  MFLTRVFGRTFLAAARSETSSAAAAAASTARTGYNPLEEFFEAERSPDDDKPVVYGLDTC 129
           MFLTRVFGRTFLAAARSETSSA AAAA+TARTGYNPLEEFFEA+RSPDD KPVVYG    
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYG---- 60

Query: 130 VRPGCPWMTNESSYSWTQIILDALLASRKGPGSLEIFFSRSWKASELRLKSWDDLNKLWY 189
                                                  RSWKASELRLKSWDDLNKLWY
Sbjct: 61  ---------------------------------------RSWKASELRLKSWDDLNKLWY 120

Query: 190 VLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAIEEPDPRRSGEMK 249
           VLLKEKNMLMTQRQMLNAQNLRFPNPERI KVRKSMCRIK VLTERAI+EPDPRRS EMK
Sbjct: 121 VLLKEKNMLMTQRQMLNAQNLRFPNPERISKVRKSMCRIKHVLTERAIDEPDPRRSAEMK 143

Query: 250 RMINAL 256
           RMINAL
Sbjct: 181 RMINAL 143

[Close]

BLAST of Spg022468 vs. NCBI nr
Match: XP_023530690.1 (39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530691.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530692.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530693.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530694.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530695.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530697.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 242.7 bits (618), Expect = 3.5e-60
Identity = 132/186 (70.97%), Postives = 137/186 (73.66%), Query Frame = 0


Query: 70  MFLTRVFGRTFLAAARSETSSAAAAAASTARTGYNPLEEFFEAERSPDDDKPVVYGLDTC 129
           MFLTR+FGRTFLAAARSE S+A AAA STARTGYNPLEEFFE  RSP+DDKPVVYG    
Sbjct: 1   MFLTRIFGRTFLAAARSEASAATAAAGSTARTGYNPLEEFFEVHRSPEDDKPVVYG---- 60

Query: 130 VRPGCPWMTNESSYSWTQIILDALLASRKGPGSLEIFFSRSWKASELRLKSWDDLNKLWY 189
                                                  RSWKASELRLKSWDDLNKLWY
Sbjct: 61  ---------------------------------------RSWKASELRLKSWDDLNKLWY 120

Query: 190 VLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAIEEPDPRRSGEMK 249
           VLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAI+EPDPRRS EMK
Sbjct: 121 VLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAIDEPDPRRSAEMK 143

Query: 250 RMINAL 256
           RM+NAL
Sbjct: 181 RMVNAL 143

[Close]

BLAST of Spg022468 vs. NCBI nr
Match: XP_022968794.1 (39S ribosomal protein L47, mitochondrial-like [Cucurbita maxima] >XP_022968803.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita maxima] >XP_022968810.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita maxima] >XP_022968818.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita maxima] >XP_022968826.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 242.3 bits (617), Expect = 4.6e-60
Identity = 132/186 (70.97%), Postives = 137/186 (73.66%), Query Frame = 0


Query: 70  MFLTRVFGRTFLAAARSETSSAAAAAASTARTGYNPLEEFFEAERSPDDDKPVVYGLDTC 129
           M LTR+FGRTFLAAARSETS+A AAA STARTGYNPLEEFFEA RSPDDDKPVVYG    
Sbjct: 1   MLLTRIFGRTFLAAARSETSAATAAAGSTARTGYNPLEEFFEAHRSPDDDKPVVYG---- 60

Query: 130 VRPGCPWMTNESSYSWTQIILDALLASRKGPGSLEIFFSRSWKASELRLKSWDDLNKLWY 189
                                                  RSWKASELRLKSWDDLNKLWY
Sbjct: 61  ---------------------------------------RSWKASELRLKSWDDLNKLWY 120

Query: 190 VLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAIEEPDPRRSGEMK 249
           VLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAI+EPDPRR  E+K
Sbjct: 121 VLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAIDEPDPRRCAELK 143

Query: 250 RMINAL 256
           RM+NAL
Sbjct: 181 RMVNAL 143

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BLAST of Spg022468 vs. ExPASy Swiss-Prot
Match: Q8K2Y7 (39S ribosomal protein L47, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl47 PE=1 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 3.2e-11
Identity = 38/86 (44.19%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 150 LDALLASRKGPGSLEIFFSRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQN 209
           L+      K  G  ++    SW   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q 
Sbjct: 66  LEEFFDDPKNWGEEKVKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQR 125

Query: 210 LRFPNPERIPKVRKSMCRIKQVLTER 236
           L  P+PER+ KV  SM  + +V+ ER
Sbjct: 126 LPMPSPERLEKVVDSMDNVDKVVQER 151

[Close]

BLAST of Spg022468 vs. ExPASy Swiss-Prot
Match: Q08DT6 (39S ribosomal protein L47, mitochondrial OS=Bos taurus OX=9913 GN=MRPL47 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.4e-11
Identity = 38/86 (44.19%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 150 LDALLASRKGPGSLEIFFSRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQN 209
           L+      K  G  ++    SW   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q 
Sbjct: 66  LEEFFDDPKNWGEEKVKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQR 125

Query: 210 LRFPNPERIPKVRKSMCRIKQVLTER 236
           L  P+PER+ KV  SM  + +V+ ER
Sbjct: 126 LPMPSPERLEKVVDSMDALDKVVQER 151

[Close]

BLAST of Spg022468 vs. ExPASy Swiss-Prot
Match: Q9HD33 (39S ribosomal protein L47, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL47 PE=1 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 1.2e-10
Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 150 LDALLASRKGPGSLEIFFSRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQN 209
           L+      K  G  ++    +W   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q 
Sbjct: 64  LEEFFDDPKNWGQEKVKSGAAWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQR 123

Query: 210 LRFPNPERIPKVRKSMCRIKQVLTER 236
           L  P+PER+ KV  SM  + +V+ ER
Sbjct: 124 LPMPSPERLDKVVDSMDALDKVVQER 149

[Close]

BLAST of Spg022468 vs. ExPASy Swiss-Prot
Match: P87232 (54S ribosomal protein L4, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl4 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.7e-09
Identity = 38/78 (48.72%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 160 PGSLEIFFSRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFP--NPER 219
           P S E  F R+W A ELR KS++DL+ LWY  L+EKN+L TQR  +    L  P  + ER
Sbjct: 50  PPSEEAKFGRAWAAEELRWKSFNDLHGLWYNCLREKNLLFTQRAEMKRLQLTIPKASNER 109

Query: 220 IPKVRKSMCRIKQVLTER 236
           +  V K+M  IK VL ER
Sbjct: 110 VLAVNKTMAAIKFVLWER 127

[Close]

BLAST of Spg022468 vs. ExPASy Swiss-Prot
Match: Q2H080 (54S ribosomal protein L4, mitochondrial OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=MRPL4 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.3e-08
Identity = 35/70 (50.00%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 169 RSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNP---ERIPKVRKSM 228
           RSW A ELR KSWDDL++LW+V  KE+N + T     N   L F      ER   VR++M
Sbjct: 121 RSWTAEELRHKSWDDLHRLWWVCAKERNRIATANWERNKSGLGFGEAEMRERDNAVRQTM 180

Query: 229 CRIKQVLTER 236
             IK VLTER
Sbjct: 181 RSIKHVLTER 190

[Close]

BLAST of Spg022468 vs. ExPASy TrEMBL
Match: A0A0A0LS48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005630 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 3.5e-61
Identity = 135/186 (72.58%), Postives = 139/186 (74.73%), Query Frame = 0


Query: 70  MFLTRVFGRTFLAAARSETSSAAAAAASTARTGYNPLEEFFEAERSPDDDKPVVYGLDTC 129
           MFLTRVFGRTFLAAARSETSSA AAAA+TARTGYNPLEEFFEA+RSPDD KPVVYG    
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYG---- 60

Query: 130 VRPGCPWMTNESSYSWTQIILDALLASRKGPGSLEIFFSRSWKASELRLKSWDDLNKLWY 189
                                                  RSWKASELRLKSWDDLNKLWY
Sbjct: 61  ---------------------------------------RSWKASELRLKSWDDLNKLWY 120

Query: 190 VLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAIEEPDPRRSGEMK 249
           VLLKEKNMLMTQRQMLNAQNL+FPNPERIPKVRKSMCRIK VLTERAI+EPDPRRS EMK
Sbjct: 121 VLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMK 143

Query: 250 RMINAL 256
           RMINAL
Sbjct: 181 RMINAL 143

[Close]

BLAST of Spg022468 vs. ExPASy TrEMBL
Match: A0A1S3BWK4 (39S ribosomal protein L47, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493926 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 1.3e-60
Identity = 135/186 (72.58%), Postives = 138/186 (74.19%), Query Frame = 0


Query: 70  MFLTRVFGRTFLAAARSETSSAAAAAASTARTGYNPLEEFFEAERSPDDDKPVVYGLDTC 129
           MFLTRVFGRTFLAAARSETSSA AAAA+TARTGYNPLEEFFEA+RSPDD KPVVYG    
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYG---- 60

Query: 130 VRPGCPWMTNESSYSWTQIILDALLASRKGPGSLEIFFSRSWKASELRLKSWDDLNKLWY 189
                                                  RSWKASELRLKSWDDLNKLWY
Sbjct: 61  ---------------------------------------RSWKASELRLKSWDDLNKLWY 120

Query: 190 VLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAIEEPDPRRSGEMK 249
           VLLKEKNMLMTQRQMLNAQNLRFPNPERI KVRKSMCRIK VLTERAI+EPDPRRS EMK
Sbjct: 121 VLLKEKNMLMTQRQMLNAQNLRFPNPERISKVRKSMCRIKHVLTERAIDEPDPRRSAEMK 143

Query: 250 RMINAL 256
           RMINAL
Sbjct: 181 RMINAL 143

[Close]

BLAST of Spg022468 vs. ExPASy TrEMBL
Match: A0A6J1I0P6 (39S ribosomal protein L47, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111467922 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 2.2e-60
Identity = 132/186 (70.97%), Postives = 137/186 (73.66%), Query Frame = 0


Query: 70  MFLTRVFGRTFLAAARSETSSAAAAAASTARTGYNPLEEFFEAERSPDDDKPVVYGLDTC 129
           M LTR+FGRTFLAAARSETS+A AAA STARTGYNPLEEFFEA RSPDDDKPVVYG    
Sbjct: 1   MLLTRIFGRTFLAAARSETSAATAAAGSTARTGYNPLEEFFEAHRSPDDDKPVVYG---- 60

Query: 130 VRPGCPWMTNESSYSWTQIILDALLASRKGPGSLEIFFSRSWKASELRLKSWDDLNKLWY 189
                                                  RSWKASELRLKSWDDLNKLWY
Sbjct: 61  ---------------------------------------RSWKASELRLKSWDDLNKLWY 120

Query: 190 VLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAIEEPDPRRSGEMK 249
           VLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAI+EPDPRR  E+K
Sbjct: 121 VLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAIDEPDPRRCAELK 143

Query: 250 RMINAL 256
           RM+NAL
Sbjct: 181 RMVNAL 143

[Close]

BLAST of Spg022468 vs. ExPASy TrEMBL
Match: A0A6J1JCZ2 (39S ribosomal protein L47, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111485667 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 8.5e-60
Identity = 135/186 (72.58%), Postives = 138/186 (74.19%), Query Frame = 0


Query: 70  MFLTRVFGRTFLAAARSETSSAAAAAASTARTGYNPLEEFFEAERSPDDDKPVVYGLDTC 129
           MFLTRV GR FLAAARSETSS AAAAASTA TGYNPLEEFFEA+RSPDDDKPVVYG    
Sbjct: 1   MFLTRVIGRRFLAAARSETSS-AAAAASTATTGYNPLEEFFEADRSPDDDKPVVYG---- 60

Query: 130 VRPGCPWMTNESSYSWTQIILDALLASRKGPGSLEIFFSRSWKASELRLKSWDDLNKLWY 189
                                                  RSWKASELRLKSWDDLNKLWY
Sbjct: 61  ---------------------------------------RSWKASELRLKSWDDLNKLWY 120

Query: 190 VLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAIEEPDPRRSGEMK 249
           VLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAI+EPDPRRS EMK
Sbjct: 121 VLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAIDEPDPRRSAEMK 142

Query: 250 RMINAL 256
           RM+NAL
Sbjct: 181 RMVNAL 142

[Close]

BLAST of Spg022468 vs. ExPASy TrEMBL
Match: A0A6A4LEM1 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_14333 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 1.1e-59
Identity = 132/186 (70.97%), Postives = 146/186 (78.49%), Query Frame = 0


Query: 70  MFLTRVFGRTFLAAARSETSSAAAAAASTARTGYNPLEEFFEAERSPDDDKPVVYGLDTC 129
           MF++R FGRTFLAAA+SETS+AAAAA STARTGYNPLEEFFE +RS +DDKPVVYG    
Sbjct: 5   MFISRYFGRTFLAAAKSETSAAAAAATSTARTGYNPLEEFFEVDRSAEDDKPVVYGRK-- 64

Query: 130 VRPGCPWMTNESSYSWTQIILDALLASRKGPGSLEIFFSRSWKASELRLKSWDDLNKLWY 189
                   +  S +  + +     L   +   SL +   RSWKASELRLKSWDDLNKLWY
Sbjct: 65  -------FSFSSIFCLSNLTYCFHLHMGQFCTSLSL-SGRSWKASELRLKSWDDLNKLWY 124

Query: 190 VLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAIEEPDPRRSGEMK 249
           VLLKEKNMLM+QRQMLNAQNLRFPNPERIPKVRKSMCRIK VLTERAIEE DPRRS EMK
Sbjct: 125 VLLKEKNMLMSQRQMLNAQNLRFPNPERIPKVRKSMCRIKHVLTERAIEEADPRRSAEMK 180

Query: 250 RMINAL 256
           RM+NAL
Sbjct: 185 RMVNAL 180

[Close]

BLAST of Spg022468 vs. TAIR 10
Match: AT1G07830.1 (ribosomal protein L29 family protein )

HSP 1 Score: 200.7 bits (509), Expect = 1.4e-51
Identity = 118/188 (62.77%), Postives = 126/188 (67.02%), Query Frame = 0


Query: 70  MFLTRVFGRTFLAA--ARSETSSAAAAAASTARTGYNPLEEFFEAERSPDDDKPVVYGLD 129
           MFLTR  GR FLAA  ARSE S+ AAAAAST RT  NPLEEFFE +RS D+DKPVVYG  
Sbjct: 1   MFLTRFVGRRFLAAASARSE-STTAAAAASTIRTPTNPLEEFFEFDRSQDEDKPVVYG-- 60

Query: 130 TCVRPGCPWMTNESSYSWTQIILDALLASRKGPGSLEIFFSRSWKASELRLKSWDDLNKL 189
                                                    R WKASELRLKSWDDL KL
Sbjct: 61  -----------------------------------------RGWKASELRLKSWDDLQKL 120

Query: 190 WYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAIEEPDPRRSGE 249
           WYVLLKEKNMLMTQRQML AQN++FPNPERIPKVR+SMCRIK VLTERAIEEPD RRS E
Sbjct: 121 WYVLLKEKNMLMTQRQMLQAQNMQFPNPERIPKVRRSMCRIKHVLTERAIEEPDSRRSAE 144

Query: 250 MKRMINAL 256
           MKRM+N +
Sbjct: 181 MKRMVNGM 144

The following BLAST results are available for this feature:

BLAST of Spg022468 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879389.1	1.9e-61	73.12	39S ribosomal protein L47, mitochondrial [Benincasa hispida] >XP_038879390.1 39S...	[more]
XP_004138121.1	7.1e-61	72.58	39S ribosomal protein L47, mitochondrial [Cucumis sativus] >KGN63602.1 hypotheti...	[more]
XP_008453113.1	2.7e-60	72.58	PREDICTED: 39S ribosomal protein L47, mitochondrial [Cucumis melo]	[more]
XP_023530690.1	3.5e-60	70.97	39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_0...	[more]
XP_022968794.1	4.6e-60	70.97	39S ribosomal protein L47, mitochondrial-like [Cucurbita maxima] >XP_022968803.1...	[more]

BLAST of Spg022468 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8K2Y7	3.2e-11	44.19	39S ribosomal protein L47, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl47 PE=1...	[more]
Q08DT6	5.4e-11	44.19	39S ribosomal protein L47, mitochondrial OS=Bos taurus OX=9913 GN=MRPL47 PE=2 SV...	[more]
Q9HD33	1.2e-10	43.02	39S ribosomal protein L47, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL47 PE=1 ...	[more]
P87232	1.7e-09	48.72	54S ribosomal protein L4, mitochondrial OS=Schizosaccharomyces pombe (strain 972...	[more]
Q2H080	4.3e-08	50.00	54S ribosomal protein L4, mitochondrial OS=Chaetomium globosum (strain ATCC 6205...	[more]

BLAST of Spg022468 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LS48	3.5e-61	72.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005630 PE=3 SV=1	[more]
A0A1S3BWK4	1.3e-60	72.58	39S ribosomal protein L47, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493926...	[more]
A0A6J1I0P6	2.2e-60	70.97	39S ribosomal protein L47, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1JCZ2	8.5e-60	72.58	39S ribosomal protein L47, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6A4LEM1	1.1e-59	70.97	Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3...	[more]

BLAST of Spg022468 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07830.1	1.4e-51	62.77	ribosomal protein L29 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038340	MRP-L47 superfamily, mitochondrial	GENE3D	6.10.330.20		coord: 101..243 e-value: 5.5E-27 score: 95.7
IPR010729	Ribosomal protein L47, mitochondrial	PFAM	PF06984	MRP-L47	coord: 161..235 e-value: 5.0E-30 score: 103.5
IPR010729	Ribosomal protein L47, mitochondrial	PANTHER	PTHR21183	RIBOSOMAL PROTEIN L47, MITOCHONDRIAL-RELATED	coord: 70..255
None	No IPR available	CDD	cd00427	Ribosomal_L29_HIP	coord: 174..235 e-value: 2.0557E-13 score: 61.3495
IPR036049	Ribosomal protein L29/L35 superfamily	SUPERFAMILY	46561	Ribosomal protein L29 (L29p)	coord: 171..238

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg022468.1	Spg022468.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032543	mitochondrial translation
biological_process	GO:0006412	translation
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005761	mitochondrial ribosome
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome