Spg022231 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg022231
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	photosynthetic NDH subunit of subcomplex B 4, chloroplastic
Location	scaffold2: 4864076 .. 4866177 (+)
RNA-Seq Expression	Spg022231
Synteny	Spg022231

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGGGTTTAGCTAAGTGGTAATTGGCATGTATCCTCGCCAAGAGGTCAGAAATTCGAATCTCCACCCCCAAATATTAATGCAAAATAAATAAATAAACTTAGCACATTCCCAAACTTACAACGGGATCCGTCGCCCTAAACTGGGCCAAAATGAGAATTAATTGAAGCATTTCAAAGGGACTTCTCGTCTATGACAATTATGCCCAACACAGAAGGGTGGATAGAAATGGTTCCCTTATCCATTATTTTTCTTCAGCAGAATAAGATTCCAAAACCCAGCAAATAGCAAGCGCTTCGTTTATCTTTTCTTCTACAACAATGGCTAAGGCTATCGCAGGCTTCAGCATTATCAAACCAACTCTGCATAGCTCTAATCTCCATCCACACAAATCAATCCACATCCCATATTCCAAACTGGTATAGCATCATCTTTTTCCCCTTTCGCCTCAAAATCCCATCCGTCTTAGTTTTACCATTATATTGTGATTCTTGCAGCTCACAAACTCTGGAGTTTTCGGCCATCGACAACTGGTGAGTTGCTCCGATTCCCTCAAATTTTGTGTCTGGGTAGTGGATAAGGAAGTAAAATTGATTGGCAGATTCGTCAATATACAGTAGTTCATCTGTTTTTGTATGATGATTTAGCCTGCAGGTACAAAGCCCCAGAGAGGCTCTTCTCTGGGCAAAGTGAATGCTTTCCCAGATTGGCAATTGATGGCGGTTCTAGTCGATCACATGGACGGCCAAAGGGACCTTATTACCCACAAATCCATAGTGCATCTTAGTGATGAAGCTATCAAGAATGTCTGTAAGTGTTTGGTTATGCAGACTTTTCTGTACATCCATCGTAGATTGTAGATAGAATTAGGCCATTGGAAATGGAAACTAATTTTCCCTTTAACCATTGTTTAATGTCAGACAGTCTTTACATCATGTTCACTTGTTGGGGATGTTTGTTCTTTGGCTCCATGAAGGTACCAAATCTTCAGTTTCATGATTAGGTCCAAACCACTGTATCCAGACCTTCGAGGTTTTAGATTACTGAACAAGATTATGTTTCTAGGATCCATATTATGATTCAGAGGTGTACAGGAAAGATGGAGGAGATGGAACAGGGCACTGGGTCTACGAGAAGGTGAACTCTTTTGGGAATTCAGATAGTTTTCATTTCACCATTTTGCTTAGGTTTTGTCTTTGTAAATGTCTGGTGTTGCAGCAAGAGGACATTGAAGAAGCAGCGAGAGCAGAGCTATGGCGGGAGGAGCTGATTGAGGAGATTGAGCAGAAGGTTGGAGGACTTCGAGAGTTGGAAGAAGCAGGCAAGAAATAAGAGCTTGACAAAAGATTTGGGCAATGTTCTTGATTTAATATAGCATAATCATTTTGTGTATATATTAAAAGCCCTGGGATGCTATAGCTGTTGGCAATACAGGGCTTGATTCAAACATTCTACGCTTGTGTTTCAGAAACATCTCAGAGTTCTTTACTTGTAGAAAACAGAAGAAACAATCCAAAACGTAGAAAATATCAGTTCTTTTTATCAAGGAATTTGCCTCAGAGGTAGTGACAATCTTGTATTATCATCACTTTTGTATCTGGTAATACGTGCAATTCTAATGCATCACAGGCAAATTTCCAGATTACAAGTTCTTGGTTCAAAAGGAAGAAAATTAGAAAAGAAGAATTGAAATTTTTTGGTCGAGTAAGCATCAGAGAGATTCCCAACAGACGATCATCATTCTCAAGCTGAGTGCTGATGTCCCTGTCTGTTTCATCGTCACTTGCTCAATCGATCAACAAAAAACTGGAATCCATAATCTAGCAAACCAACAATAAAATTCTTGAAGAAAAAGCGAACAAACCTCAATGCCTCAAAATGATGATTTAACCATCAAAGATCGACATTGGCATTTCAAAAAAAAAAAAATCGTTAGAACTTCAAACACGAGAAAATCAAAGAAGTGAACAATGGTTCCCCGATGAAATTATTTCATGGGTTAGAATATTCGACGACATGAAATATCGAACCGTGAGCGAGAGCGATCCTCTCATGGCGGCCATGTCAGAGATAATGGAATGCAATGCAACATCAGAATTCAGAG

mRNA sequence

ATGGCTAAGGCTATCGCAGGCTTCAGCATTATCAAACCAACTCTGCATAGCTCTAATCTCCATCCACACAAATCAATCCACATCCCATATTCCAAACTGCTCACAAACTCTGGAGTTTTCGGCCATCGACAACTGCCTGCAGGTACAAAGCCCCAGAGAGGCTCTTCTCTGGGCAAAGTGAATGCTTTCCCAGATTGGCAATTGATGGCGGTTCTAGTCGATCACATGGACGGCCAAAGGGACCTTATTACCCACAAATCCATAGTGCATCTTAGTGATGAAGCTATCAAGAATGTCTACAGTCTTTACATCATGTTCACTTGTTGGGGATGTTTGTTCTTTGGCTCCATGAAGGATCCATATTATGATTCAGAGGTGTACAGGAAAGATGGAGGAGATGGAACAGGGCACTGGGTCTACGAGAAGGTGAACTCTTTTGGGAATTCAGATAGTTTTCATTTCACCATTTTGCTTAGGTTTTGTCTTTGTAAATGTCTGGTGTTGCAGCAAGAGGACATTGAAGAAGCAGCGAGAGCAGAGCTATGGCGGGAGGAGCTGATTGAGGAGATTGAGCAGAAGGTTGGAGGACTTCGAGAGTTGGAAGAAGCAGGCAAGAAATAA

Coding sequence (CDS)

ATGGCTAAGGCTATCGCAGGCTTCAGCATTATCAAACCAACTCTGCATAGCTCTAATCTCCATCCACACAAATCAATCCACATCCCATATTCCAAACTGCTCACAAACTCTGGAGTTTTCGGCCATCGACAACTGCCTGCAGGTACAAAGCCCCAGAGAGGCTCTTCTCTGGGCAAAGTGAATGCTTTCCCAGATTGGCAATTGATGGCGGTTCTAGTCGATCACATGGACGGCCAAAGGGACCTTATTACCCACAAATCCATAGTGCATCTTAGTGATGAAGCTATCAAGAATGTCTACAGTCTTTACATCATGTTCACTTGTTGGGGATGTTTGTTCTTTGGCTCCATGAAGGATCCATATTATGATTCAGAGGTGTACAGGAAAGATGGAGGAGATGGAACAGGGCACTGGGTCTACGAGAAGGTGAACTCTTTTGGGAATTCAGATAGTTTTCATTTCACCATTTTGCTTAGGTTTTGTCTTTGTAAATGTCTGGTGTTGCAGCAAGAGGACATTGAAGAAGCAGCGAGAGCAGAGCTATGGCGGGAGGAGCTGATTGAGGAGATTGAGCAGAAGGTTGGAGGACTTCGAGAGTTGGAAGAAGCAGGCAAGAAATAA

Protein sequence

MAKAIAGFSIIKPTLHSSNLHPHKSIHIPYSKLLTNSGVFGHRQLPAGTKPQRGSSLGKVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKVNSFGNSDSFHFTILLRFCLCKCLVLQQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK

Homology

[Close]

BLAST of Spg022231 vs. NCBI nr
Match: XP_022933404.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucurbita moschata] >XP_023531595.1 photosynthetic NDH subunit of subcomplex B 4, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo] >KAG6587547.1 Photosynthetic NDH subunit of subcomplex B 4, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021522.1 Photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 314.3 bits (804), Expect = 7.7e-82
Identity = 163/207 (78.74%), Postives = 169/207 (81.64%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLH-SSNLHPHKSIHIPYSKLLTNSGVFGHRQLPAGTKPQRGSSLGK 60
           MAKAIAGFSIIK TL+ SSNLHPHKS HIP+S LL NSGVF HRQL  G+K QRG SLG+
Sbjct: 1   MAKAIAGFSIIKQTLYSSSNLHPHKSTHIPFSTLLPNSGVFSHRQLTEGSKRQRG-SLGR 60

Query: 61  VNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD 120
           VNAFPDW LMAVLVDH+DGQRDL+THKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD
Sbjct: 61  VNAFPDWPLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD 120

Query: 121 PYYDSEVYRKDGGDGTGHWVYEKVNSFGNSDSFHFTILLRFCLCKCLVLQQEDIEEAARA 180
           PYYDSEVYRKDGGDGTGHWVYEK                           QEDIEEAARA
Sbjct: 121 PYYDSEVYRKDGGDGTGHWVYEK---------------------------QEDIEEAARA 179

Query: 181 ELWREELIEEIEQKVGGLRELEEAGKK 207
           ELWREELIEEIEQKVGGLRELEEAGKK
Sbjct: 181 ELWREELIEEIEQKVGGLRELEEAGKK 179

[Close]

BLAST of Spg022231 vs. NCBI nr
Match: XP_023516363.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 312.0 bits (798), Expect = 3.8e-81
Identity = 158/206 (76.70%), Postives = 169/206 (82.04%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPHKSIHIPYSKLLTNSGVFGHRQLPAGTKPQRGSSLGKV 60
           MAKAIAGFS+I PTLHSSNLHPHKS  IP+ KL +NSG+FGH+QL   TK QRG S+GKV
Sbjct: 1   MAKAIAGFSMINPTLHSSNLHPHKSTLIPHPKLPSNSGIFGHQQLIEDTKRQRG-SMGKV 60

Query: 61  NAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           +AFPDWQLMAVLVDH+DGQRDL+THKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP
Sbjct: 61  SAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120

Query: 121 YYDSEVYRKDGGDGTGHWVYEKVNSFGNSDSFHFTILLRFCLCKCLVLQQEDIEEAARAE 180
           YYDSEVYRKDGGDGTGHWVYEK                           QEDIEEAARA+
Sbjct: 121 YYDSEVYRKDGGDGTGHWVYEK---------------------------QEDIEEAARAD 178

Query: 181 LWREELIEEIEQKVGGLRELEEAGKK 207
           LWREELIEEIEQKVGGLRELEEAG+K
Sbjct: 181 LWREELIEEIEQKVGGLRELEEAGRK 178

[Close]

BLAST of Spg022231 vs. NCBI nr
Match: XP_008453213.1 (PREDICTED: photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucumis melo] >KAA0057951.1 photosynthetic NDH subunit of subcomplex B 4 [Cucumis melo var. makuwa])

HSP 1 Score: 310.8 bits (795), Expect = 8.6e-81
Identity = 161/206 (78.16%), Postives = 169/206 (82.04%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPHKSIHIPYSKLLTNSGVFGHRQLPAGTKPQRGSSLGKV 60
           MAKAIAGFSIIKPTLHSSNLHP KS  IP+SKLL+NSG F H++LP   KP+RG SL KV
Sbjct: 1   MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLLSNSGGFSHQELPKVAKPKRG-SLSKV 60

Query: 61  NAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           NAFPDWQLMAVLVDH+DGQRDL+THKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP
Sbjct: 61  NAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120

Query: 121 YYDSEVYRKDGGDGTGHWVYEKVNSFGNSDSFHFTILLRFCLCKCLVLQQEDIEEAARAE 180
           YYDSEVYRKDGGDGTGHWVYEK                           QEDIEEAARA+
Sbjct: 121 YYDSEVYRKDGGDGTGHWVYEK---------------------------QEDIEEAARAD 177

Query: 181 LWREELIEEIEQKVGGLRELEEAGKK 207
           LWREELIEEIEQKVGGLRELEEAGKK
Sbjct: 181 LWREELIEEIEQKVGGLRELEEAGKK 177

[Close]

BLAST of Spg022231 vs. NCBI nr
Match: XP_038880039.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Benincasa hispida])

HSP 1 Score: 309.7 bits (792), Expect = 1.9e-80
Identity = 158/206 (76.70%), Postives = 168/206 (81.55%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPHKSIHIPYSKLLTNSGVFGHRQLPAGTKPQRGSSLGKV 60
           MAKAIAGFSIIKPTLHSSNLH HKS  IP SKLL+NS  F H++ P  TKP+RG SLGK+
Sbjct: 1   MAKAIAGFSIIKPTLHSSNLHQHKSTLIPPSKLLSNSRAFNHQEPPEVTKPRRG-SLGKL 60

Query: 61  NAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           NAFPDWQLMAVLVDH+DGQRDL+THKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP
Sbjct: 61  NAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120

Query: 121 YYDSEVYRKDGGDGTGHWVYEKVNSFGNSDSFHFTILLRFCLCKCLVLQQEDIEEAARAE 180
           YYDSEVYRKDGGDGTGHWVYEK                           QEDIEEAARA+
Sbjct: 121 YYDSEVYRKDGGDGTGHWVYEK---------------------------QEDIEEAARAD 178

Query: 181 LWREELIEEIEQKVGGLRELEEAGKK 207
           LWREELIEEIEQ+VGGL+ELEEAGKK
Sbjct: 181 LWREELIEEIEQRVGGLKELEEAGKK 178

[Close]

BLAST of Spg022231 vs. NCBI nr
Match: XP_022987205.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 309.7 bits (792), Expect = 1.9e-80
Identity = 157/206 (76.21%), Postives = 168/206 (81.55%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPHKSIHIPYSKLLTNSGVFGHRQLPAGTKPQRGSSLGKV 60
           MAKAIAGFS+I PTLHSSNLHPHK+  IP  KL +NSG+FGH+QL   TK QRG S+GKV
Sbjct: 1   MAKAIAGFSMINPTLHSSNLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKRQRG-SMGKV 60

Query: 61  NAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           +AFPDWQLMAVLVDH+DGQRDL+THKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP
Sbjct: 61  SAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120

Query: 121 YYDSEVYRKDGGDGTGHWVYEKVNSFGNSDSFHFTILLRFCLCKCLVLQQEDIEEAARAE 180
           YYDSEVYRKDGGDGTGHWVYEK                           QEDIEEAARA+
Sbjct: 121 YYDSEVYRKDGGDGTGHWVYEK---------------------------QEDIEEAARAD 178

Query: 181 LWREELIEEIEQKVGGLRELEEAGKK 207
           LWREELIEEIEQKVGGLRELEEAG+K
Sbjct: 181 LWREELIEEIEQKVGGLRELEEAGRK 178

[Close]

BLAST of Spg022231 vs. ExPASy Swiss-Prot
Match: Q8RXS1 (Photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB4 PE=2 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 9.6e-43
Identity = 106/211 (50.24%), Postives = 123/211 (58.29%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLH-PHKSIHIPYSKLLTNSGVFGHRQLPAGTKPQRGSSLGK 60
           MA+A   F+        +NLH P    H P      N G +  + +    K +R    G 
Sbjct: 1   MAEAFTSFTF-------TNLHIPSSYNHSPKQNSGPNHGYWLSKNV--NEKRERNLMRGS 60

Query: 61  V---NAFP-DWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFG 120
           +    A P D  LMAV+V  ++G RD+IT K + HLSD+AIKNVY  YIMFTCWGCL+FG
Sbjct: 61  LCVRKALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFG 120

Query: 121 SMKDPYYDSEVYRKDGGDGTGHWVYEKVNSFGNSDSFHFTILLRFCLCKCLVLQQEDIEE 180
           S KDP+YDSE YR DGGDGTG+WVYE                            QEDIEE
Sbjct: 121 SAKDPFYDSEEYRGDGGDGTGYWVYE---------------------------TQEDIEE 175

Query: 181 AARAELWREELIEEIEQKVGGLRELEEAGKK 207
            ARAELWREELIEEIEQKVGGLRELEEA  K
Sbjct: 181 KARAELWREELIEEIEQKVGGLRELEEAVTK 175

[Close]

BLAST of Spg022231 vs. ExPASy TrEMBL
Match: A0A6J1EZP2 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111440832 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 3.8e-82
Identity = 163/207 (78.74%), Postives = 169/207 (81.64%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLH-SSNLHPHKSIHIPYSKLLTNSGVFGHRQLPAGTKPQRGSSLGK 60
           MAKAIAGFSIIK TL+ SSNLHPHKS HIP+S LL NSGVF HRQL  G+K QRG SLG+
Sbjct: 1   MAKAIAGFSIIKQTLYSSSNLHPHKSTHIPFSTLLPNSGVFSHRQLTEGSKRQRG-SLGR 60

Query: 61  VNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD 120
           VNAFPDW LMAVLVDH+DGQRDL+THKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD
Sbjct: 61  VNAFPDWPLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD 120

Query: 121 PYYDSEVYRKDGGDGTGHWVYEKVNSFGNSDSFHFTILLRFCLCKCLVLQQEDIEEAARA 180
           PYYDSEVYRKDGGDGTGHWVYEK                           QEDIEEAARA
Sbjct: 121 PYYDSEVYRKDGGDGTGHWVYEK---------------------------QEDIEEAARA 179

Query: 181 ELWREELIEEIEQKVGGLRELEEAGKK 207
           ELWREELIEEIEQKVGGLRELEEAGKK
Sbjct: 181 ELWREELIEEIEQKVGGLRELEEAGKK 179

[Close]

BLAST of Spg022231 vs. ExPASy TrEMBL
Match: A0A5A7UWT7 (Photosynthetic NDH subunit of subcomplex B 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002540 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 4.1e-81
Identity = 161/206 (78.16%), Postives = 169/206 (82.04%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPHKSIHIPYSKLLTNSGVFGHRQLPAGTKPQRGSSLGKV 60
           MAKAIAGFSIIKPTLHSSNLHP KS  IP+SKLL+NSG F H++LP   KP+RG SL KV
Sbjct: 1   MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLLSNSGGFSHQELPKVAKPKRG-SLSKV 60

Query: 61  NAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           NAFPDWQLMAVLVDH+DGQRDL+THKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP
Sbjct: 61  NAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120

Query: 121 YYDSEVYRKDGGDGTGHWVYEKVNSFGNSDSFHFTILLRFCLCKCLVLQQEDIEEAARAE 180
           YYDSEVYRKDGGDGTGHWVYEK                           QEDIEEAARA+
Sbjct: 121 YYDSEVYRKDGGDGTGHWVYEK---------------------------QEDIEEAARAD 177

Query: 181 LWREELIEEIEQKVGGLRELEEAGKK 207
           LWREELIEEIEQKVGGLRELEEAGKK
Sbjct: 181 LWREELIEEIEQKVGGLRELEEAGKK 177

[Close]

BLAST of Spg022231 vs. ExPASy TrEMBL
Match: A0A1S3BVN6 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494001 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 4.1e-81
Identity = 161/206 (78.16%), Postives = 169/206 (82.04%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPHKSIHIPYSKLLTNSGVFGHRQLPAGTKPQRGSSLGKV 60
           MAKAIAGFSIIKPTLHSSNLHP KS  IP+SKLL+NSG F H++LP   KP+RG SL KV
Sbjct: 1   MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLLSNSGGFSHQELPKVAKPKRG-SLSKV 60

Query: 61  NAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           NAFPDWQLMAVLVDH+DGQRDL+THKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP
Sbjct: 61  NAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120

Query: 121 YYDSEVYRKDGGDGTGHWVYEKVNSFGNSDSFHFTILLRFCLCKCLVLQQEDIEEAARAE 180
           YYDSEVYRKDGGDGTGHWVYEK                           QEDIEEAARA+
Sbjct: 121 YYDSEVYRKDGGDGTGHWVYEK---------------------------QEDIEEAARAD 177

Query: 181 LWREELIEEIEQKVGGLRELEEAGKK 207
           LWREELIEEIEQKVGGLRELEEAGKK
Sbjct: 181 LWREELIEEIEQKVGGLRELEEAGKK 177

[Close]

BLAST of Spg022231 vs. ExPASy TrEMBL
Match: A0A6J1JG67 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111484826 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 9.2e-81
Identity = 157/206 (76.21%), Postives = 168/206 (81.55%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPHKSIHIPYSKLLTNSGVFGHRQLPAGTKPQRGSSLGKV 60
           MAKAIAGFS+I PTLHSSNLHPHK+  IP  KL +NSG+FGH+QL   TK QRG S+GKV
Sbjct: 1   MAKAIAGFSMINPTLHSSNLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKRQRG-SMGKV 60

Query: 61  NAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           +AFPDWQLMAVLVDH+DGQRDL+THKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP
Sbjct: 61  SAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120

Query: 121 YYDSEVYRKDGGDGTGHWVYEKVNSFGNSDSFHFTILLRFCLCKCLVLQQEDIEEAARAE 180
           YYDSEVYRKDGGDGTGHWVYEK                           QEDIEEAARA+
Sbjct: 121 YYDSEVYRKDGGDGTGHWVYEK---------------------------QEDIEEAARAD 178

Query: 181 LWREELIEEIEQKVGGLRELEEAGKK 207
           LWREELIEEIEQKVGGLRELEEAG+K
Sbjct: 181 LWREELIEEIEQKVGGLRELEEAGRK 178

[Close]

BLAST of Spg022231 vs. ExPASy TrEMBL
Match: A0A0A0LRP8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009830 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 2.1e-80
Identity = 160/206 (77.67%), Postives = 168/206 (81.55%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPHKSIHIPYSKLLTNSGVFGHRQLPAGTKPQRGSSLGKV 60
           MAKAIAGFSIIKPTLHSSNLHP KS  IP+SKLL+NSG F H++LP   KP+RG SL KV
Sbjct: 1   MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLLSNSGGFSHQELPKVVKPKRG-SLSKV 60

Query: 61  NAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           NAFPDWQLMAVLVDH+DGQRDL+THKSIVHLSD AIKNVYSLYIMFTCWGCLFFGSMKDP
Sbjct: 61  NAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNVYSLYIMFTCWGCLFFGSMKDP 120

Query: 121 YYDSEVYRKDGGDGTGHWVYEKVNSFGNSDSFHFTILLRFCLCKCLVLQQEDIEEAARAE 180
           YYDSEVYRKDGGDGTGHWVYEK                           QEDIEEAARA+
Sbjct: 121 YYDSEVYRKDGGDGTGHWVYEK---------------------------QEDIEEAARAD 177

Query: 181 LWREELIEEIEQKVGGLRELEEAGKK 207
           LWREELIEEIEQKVGGLRELEEAGKK
Sbjct: 181 LWREELIEEIEQKVGGLRELEEAGKK 177

[Close]

BLAST of Spg022231 vs. TAIR 10
Match: AT1G18730.1 (NDH dependent flow 6 )

HSP 1 Score: 174.9 bits (442), Expect = 6.8e-44
Identity = 106/211 (50.24%), Postives = 123/211 (58.29%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLH-PHKSIHIPYSKLLTNSGVFGHRQLPAGTKPQRGSSLGK 60
           MA+A   F+        +NLH P    H P      N G +  + +    K +R    G 
Sbjct: 1   MAEAFTSFTF-------TNLHIPSSYNHSPKQNSGPNHGYWLSKNV--NEKRERNLMRGS 60

Query: 61  V---NAFP-DWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFG 120
           +    A P D  LMAV+V  ++G RD+IT K + HLSD+AIKNVY  YIMFTCWGCL+FG
Sbjct: 61  LCVRKALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFG 120

Query: 121 SMKDPYYDSEVYRKDGGDGTGHWVYEKVNSFGNSDSFHFTILLRFCLCKCLVLQQEDIEE 180
           S KDP+YDSE YR DGGDGTG+WVYE                            QEDIEE
Sbjct: 121 SAKDPFYDSEEYRGDGGDGTGYWVYE---------------------------TQEDIEE 175

Query: 181 AARAELWREELIEEIEQKVGGLRELEEAGKK 207
            ARAELWREELIEEIEQKVGGLRELEEA  K
Sbjct: 181 KARAELWREELIEEIEQKVGGLRELEEAVTK 175

[Close]

BLAST of Spg022231 vs. TAIR 10
Match: AT1G18730.3 (NDH dependent flow 6 )

HSP 1 Score: 174.9 bits (442), Expect = 6.8e-44
Identity = 107/208 (51.44%), Postives = 121/208 (58.17%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPHKSIHIP-YSKLLTNSGVFGHRQLPAGTKPQRGSSLGK 60
           MA+A   F+     + SS  H  K    P +   L+N      R L  G       SL  
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPKQNSGPNHGYWLSNVNEKRERNLMRG-------SLCV 60

Query: 61  VNAFP-DWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMK 120
             A P D  LMAV+V  ++G RD+IT K + HLSD+AIKNVY  YIMFTCWGCL+FGS K
Sbjct: 61  RKALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAK 120

Query: 121 DPYYDSEVYRKDGGDGTGHWVYEKVNSFGNSDSFHFTILLRFCLCKCLVLQQEDIEEAAR 180
           DP+YDSE YR DGGDGTG+WVYE                            QEDIEE AR
Sbjct: 121 DPFYDSEEYRGDGGDGTGYWVYE---------------------------TQEDIEEKAR 174

Query: 181 AELWREELIEEIEQKVGGLRELEEAGKK 207
           AELWREELIEEIEQKVGGLRELEEA  K
Sbjct: 181 AELWREELIEEIEQKVGGLRELEEAVTK 174

[Close]

BLAST of Spg022231 vs. TAIR 10
Match: AT1G18730.4 (NDH dependent flow 6 )

HSP 1 Score: 132.5 bits (332), Expect = 3.9e-31
Identity = 74/145 (51.03%), Postives = 88/145 (60.69%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPHKSIHIP-YSKLLTNSGVFGHRQLPAGTKPQRGSSLGK 60
           MA+A   F+     + SS  H  K    P +   L+N      R L  G       SL  
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPKQNSGPNHGYWLSNVNEKRERNLMRG-------SLCV 60

Query: 61  VNAFP-DWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMK 120
             A P D  LMAV+V  ++G RD+IT K + HLSD+AIKNVY  YIMFTCWGCL+FGS K
Sbjct: 61  RKALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAK 120

Query: 121 DPYYDSEVYRKDGGDGTGHWVYEKV 144
           DP+YDSE YR DGGDGTG+WVYE V
Sbjct: 121 DPFYDSEEYRGDGGDGTGYWVYETV 138

[Close]

BLAST of Spg022231 vs. TAIR 10
Match: AT1G18730.2 (NDH dependent flow 6 )

HSP 1 Score: 132.1 bits (331), Expect = 5.1e-31
Identity = 73/145 (50.34%), Postives = 88/145 (60.69%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPHKSIHIP-YSKLLTNSGVFGHRQLPAGTKPQRGSSLGK 60
           MA+A   F+     + SS  H  K    P +   L+N      R L  G       SL  
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPKQNSGPNHGYWLSNVNEKRERNLMRG-------SLCV 60

Query: 61  VNAFP-DWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMK 120
             A P D  LMAV+V  ++G RD+IT K + HLSD+AIKNVY  YIMFTCWGCL+FGS K
Sbjct: 61  RKALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAK 120

Query: 121 DPYYDSEVYRKDGGDGTGHWVYEKV 144
           DP+YDSE YR DGGDGTG+WVYE +
Sbjct: 121 DPFYDSEEYRGDGGDGTGYWVYETI 138

The following BLAST results are available for this feature:

BLAST of Spg022231 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933404.1	7.7e-82	78.74	photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucurbita moschata]...	[more]
XP_023516363.1	3.8e-81	76.70	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita pepo...	[more]
XP_008453213.1	8.6e-81	78.16	PREDICTED: photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucumis ...	[more]
XP_038880039.1	1.9e-80	76.70	photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Benincasa hispida]	[more]
XP_022987205.1	1.9e-80	76.21	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita maxi...	[more]

BLAST of Spg022231 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RXS1	9.6e-43	50.24	Photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of Spg022231 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EZP2	3.8e-82	78.74	photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Cucurbita moschat...	[more]
A0A5A7UWT7	4.1e-81	78.16	Photosynthetic NDH subunit of subcomplex B 4 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3BVN6	4.1e-81	78.16	photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Cucumis melo OX=3...	[more]
A0A6J1JG67	9.2e-81	76.21	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita ma...	[more]
A0A0A0LRP8	2.1e-80	77.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009830 PE=4 SV=1	[more]

BLAST of Spg022231 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G18730.1	6.8e-44	50.24	NDH dependent flow 6	[more]
AT1G18730.3	6.8e-44	51.44	NDH dependent flow 6	[more]
AT1G18730.4	3.9e-31	51.03	NDH dependent flow 6	[more]
AT1G18730.2	5.1e-31	50.34	NDH dependent flow 6	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 183..203
None	No IPR available	PANTHER	PTHR36315:SF2	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 4, CHLOROPLASTIC	coord: 1..206
IPR034570	Photosynthetic NDH subunit of subcomplex B 4, chloroplastic	PANTHER	PTHR36315	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 4, CHLOROPLASTIC	coord: 1..206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg022231.1	Spg022231.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)