Spg022127 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg022127
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold2: 8405046 .. 8406918 (+)
RNA-Seq ExpressionSpg022127
SyntenySpg022127
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGAGGGTATAATGCCAATTTTCATGCTAGGCTCACTTTGGCATATTAACGTCTAAATTGTGCCTAAGAAACTGTGAAATTATAATTCCAAGTTGAAAGTATTAGAAGTTTGTATAGTTATTTTTTTTTTCATCAAAGTTTTTAAAGTTTGAGATTAAGGACATGTTTGGTTTAACATTTCAAGTGTTTAATTTTGAAAAAAAAAAAGCATTTTGAATTTTTTTTAAGTGTTTGACAACTACTAAAAATGACTTATTGAAAACTAGATTGATAAATCAACCATTTTGAGGGAAATATTGAAAGCAAATTCTTTAAAAAGTGTTTTTAAGCATATAATAACGGGTTAAACAAAACACGTATCATAAATGTAATTTTAGGGTGTGTTTAGTTTAATTTTGAAAATAAATCATTTTGAAAAAATTTCTATTGTTTGGCAACCACTAAAAATGACTTATTATAAAATGAGATTAATAAATAAACCATTTTGAGATAAACTTTTTAAAAAAGAATTCTTGAGTAAACAATAACATGTTGATAAAAACATTTGTGAGGAAATGCAACCAAATATATGAGTGTTTAAATTCTAAACAATTTTTATACAAAATGTTTTTTAAAAATTACATTCTTGAAAAATATTTAAATTAAAATGCATTTCAAACGGAACTTTAAATTCAAAACAATTTTTATACAACAAGCACGGGTAGATTTGAAAGGTAGCCTTAAGATTGACGATTGTGAAAATTTATAATCTAACTCTAAATTTAAAATCAAAGTTGGTCAAAAGTCAAAACTACAATTTGACAGTCAAAATTGGTCATTTCATTTTCACATTCTGAAATCTTTCCTATCTAGCGCGATTTCAGTCTTCAATTCCTCTGAAATCTTCTCTTCCGAACCATTCTCGTTGCCCTTCACTGCATTTGATGGTGAGTGAAATTGAAGTTCATTGAATTGCTATGGCAGCACTTTCCTTTTGTTTTGATTTCGATGATTCTTCCATTTCGCATTTTGTAATTCGTTGATCATGCTTCTGCAGGCTCCGAAACCTGTTACGATTCCCGTCCCCGAAGCGTGGTACCCAACCATTGCGGTCTCAACGATCGCCCCGATGGCCTCACCGTTGCCGCTTCCTTTTTCATGTAAGTTCGATCGGAACTGTCTCTCTGTAGCGTAATGAAATATGGTTGATATTCATTATTCAGTGTGAAATGATGGGTTTGCCGTTCTGCTCGTTCTATACAAGTAGATTAGAGTCTGTTTACTTTCACCGTCTACTTTCCGGCGTTTGTTGCTTGCTTGTTTCTATTCGATTACAATGAAACCATTAGAAGATTAATCGATCATCAAGTCTACGAGCTTCTGGTATTTGGTTCGGACGGAGAGTGCGGAAATTACAATCCTAATTTTGGTCCTTTCTTCCACATTTCATGTTACTACGCTACTATTCATTCTGAAAACGAAAAGCCACGAGAAATTTAATTCCGAATGCGTTGAGAAGCCACAAGCTTCCAGCAAAAAGAAGGTCAATTTGACCATCAATGAAGATGATTCCACTGTACTCTCGTTCACTAAAAGTCCTCCATTTATTGGAATCTTCAACCTTCAATAGTGAACAAGGAGGTTAATCCCCAACTCTAGGAAGGTAGACTCCACACGAATGGGCCCTTTGATGTTGAGGGAATTCTTTCACTTGTTATTCAGCCTAACTTGGAGGATGTTATTCTGGAAGATTCTTATTCTGATGCTTTTGGTTCATTACTTCAAGGTGACAAGGATATTCCTGCTCTTCCTCCATCATCCTCAATACTTGCCACATTTGCTTCCCTTATTAAAGCGTGTGGTCTCAACATGCGTGAAATCCCCCATTGA

mRNA sequence

ATGATCGAGGCGCGATTTCAGTCTTCAATTCCTCTGAAATCTTCTCTTCCGAACCATTCTCGTTGCCCTTCACTGCATTTGATGGCTCCGAAACCTGTTACGATTCCCGTCCCCGAAGCGTGGTACCCAACCATTGCGGTCTCAACGATCGCCCCGATGGCCTCACCGTTGCCGCTTCCTTTTTCATGTAGACTCCACACGAATGGGCCCTTTGATGTTGAGGGAATTCTTTCACTTGTTATTCAGCCTAACTTGGAGGATGTTATTCTGGAAGATTCTTATTCTGATGCTTTTGGTTCATTACTTCAAGGTGACAAGGATATTCCTGCTCTTCCTCCATCATCCTCAATACTTGCCACATTTGCTTCCCTTATTAAAGCGTGTGGTCTCAACATGCGTGAAATCCCCCATTGA

Coding sequence (CDS)

ATGATCGAGGCGCGATTTCAGTCTTCAATTCCTCTGAAATCTTCTCTTCCGAACCATTCTCGTTGCCCTTCACTGCATTTGATGGCTCCGAAACCTGTTACGATTCCCGTCCCCGAAGCGTGGTACCCAACCATTGCGGTCTCAACGATCGCCCCGATGGCCTCACCGTTGCCGCTTCCTTTTTCATGTAGACTCCACACGAATGGGCCCTTTGATGTTGAGGGAATTCTTTCACTTGTTATTCAGCCTAACTTGGAGGATGTTATTCTGGAAGATTCTTATTCTGATGCTTTTGGTTCATTACTTCAAGGTGACAAGGATATTCCTGCTCTTCCTCCATCATCCTCAATACTTGCCACATTTGCTTCCCTTATTAAAGCGTGTGGTCTCAACATGCGTGAAATCCCCCATTGA

Protein sequence

MIEARFQSSIPLKSSLPNHSRCPSLHLMAPKPVTIPVPEAWYPTIAVSTIAPMASPLPLPFSCRLHTNGPFDVEGILSLVIQPNLEDVILEDSYSDAFGSLLQGDKDIPALPPSSSILATFASLIKACGLNMREIPH
Homology
[Close]
BLAST of Spg022127 vs. NCBI nr
Match: KAG7021935.1 (hypothetical protein SDJN02_15663, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 66.2 bits (160), Expect = 2.4e-07
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 24  SLHLMAPKPVTIPVPEAWYPTIAVSTIAPMASPLPLPF-SCRLH 67
           SLHLMAPKPVT PVPEAWY TIA+S IAPMAS LPL F S +LH
Sbjct: 202 SLHLMAPKPVTSPVPEAWYSTIALSVIAPMASSLPLRFSSMKLH 245

[Close]
BLAST of Spg022127 vs. NCBI nr
Match: KAG6588039.1 (hypothetical protein SDJN03_16604, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.5 bits (140), Expect = 5.1e-05
Identity = 31/40 (77.50%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 28 MAPKPVTIPVPEAWYPTIAVSTIAPMASPLPLPF-SCRLH 67
          MAPKPVT PVPEAWY TIA+S IAPMAS LPL F S +LH
Sbjct: 1  MAPKPVTSPVPEAWYSTIALSVIAPMASSLPLRFSSMKLH 40

The following BLAST results are available for this feature:
BLAST of Spg022127 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021935.12.4e-0779.55hypothetical protein SDJN02_15663, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6588039.15.1e-0577.50hypothetical protein SDJN03_16604, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Spg022127 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg022127 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg022127 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg022127.1Spg022127.1mRNA