Spg022066 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg022066
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Locationscaffold2: 11438205 .. 11438777 (+)
RNA-Seq ExpressionSpg022066
SyntenySpg022066
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCATCCACTTCGAAAGTCCGTAAACATATTTGGACACCAATGGAGGATGAAGTTTTGGTCCAGTGCCTGTTACAGTTAGTTCAAGTAGGTGGTTGGAAGGCTGACAACGGGACCTTTAGATCGGGGTATTTGCAACAAGTATTGAAGTTGATGAAAGAGAAATTGCCAAGATGCGACATACAAGTGACCTCGACCTTGGAGTACAGAGTGATGATCCTAAAAAGGCAATACGGTGCCATTGTCGAAATGATGGGCCCCACTTGCATCGCGAAAGTGCATTGAGGCGGAGAAATCAGTCTTTGATGATTGGGTCAAGGTAAAAATTCGAACATGATCCACATAGAATTCAAAAATATTATATGATTATATAGGTTAATTGTGTTAACATATTGAATATAGGTACACCCACATGCTCGAGGGATGAGGAACAAGTCATTCCCCTACTTCGACGACCTAGCAATTGTGTTCGGGAAGGATAGGGCTAATGGAGAAGGTGTTTTGACTCCGAAAGATGTGGCTACCGATCTGGATAAGTGCTGCATGTGTATCTTGGGAAGGCAACCATGA

mRNA sequence

ATGGCATCATCCACTTCGAAAGTCCGTAAACATATTTGGACACCAATGGAGGATGAAGTTTTGGTCCAGTGCCTGTTACAGTTAGTTCAAGTAGGTGGTTGGAAGGCTGACAACGGGACCTTTAGATCGGGGTATTTGCAACAAGTATTGAAGTTGATGAAAGAGAAATTGCCAAGATGCGACATACAAGTGACCTCGACCTTGGAGTACAGAGTGATGATCCTAAAAAGGCAATACGGTGCCATTGTCGAAATGATGGGCCCCACTTGCATCGCGAAAGTACACCCACATGCTCGAGGGATGAGGAACAAGTCATTCCCCTACTTCGACGACCTAGCAATTGTGTTCGGGAAGGATAGGGCTAATGGAGAAGGTGTTTTGACTCCGAAAGATGTGGCTACCGATCTGGATAAGTGCTGCATGTGTATCTTGGGAAGGCAACCATGA

Coding sequence (CDS)

ATGGCATCATCCACTTCGAAAGTCCGTAAACATATTTGGACACCAATGGAGGATGAAGTTTTGGTCCAGTGCCTGTTACAGTTAGTTCAAGTAGGTGGTTGGAAGGCTGACAACGGGACCTTTAGATCGGGGTATTTGCAACAAGTATTGAAGTTGATGAAAGAGAAATTGCCAAGATGCGACATACAAGTGACCTCGACCTTGGAGTACAGAGTGATGATCCTAAAAAGGCAATACGGTGCCATTGTCGAAATGATGGGCCCCACTTGCATCGCGAAAGTACACCCACATGCTCGAGGGATGAGGAACAAGTCATTCCCCTACTTCGACGACCTAGCAATTGTGTTCGGGAAGGATAGGGCTAATGGAGAAGGTGTTTTGACTCCGAAAGATGTGGCTACCGATCTGGATAAGTGCTGCATGTGTATCTTGGGAAGGCAACCATGA

Protein sequence

MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYRVMILKRQYGAIVEMMGPTCIAKVHPHARGMRNKSFPYFDDLAIVFGKDRANGEGVLTPKDVATDLDKCCMCILGRQP
Homology
BLAST of Spg022066 vs. NCBI nr
Match: XP_024022021.1 (uncharacterized protein LOC112091787 [Morus notabilis])

HSP 1 Score: 154.8 bits (390), Expect = 5.6e-34
Identity = 73/154 (47.40%), Postives = 97/154 (62.99%), Query Frame = 0

Query: 6   SKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDIQVT 65
           + VRKH WT +ED  LV+CLL +   G WKADNGTF+ GYLQQ+ K+M EK+P+C ++  
Sbjct: 50  ANVRKHQWTTLEDSKLVECLLDMANSGKWKADNGTFKPGYLQQLEKMMNEKIPQCGLKAQ 109

Query: 66  STLEYRVMILKRQYGAIVEMMGPT-----------CI----------AKVHPHARGMRNK 125
             ++ RV ILK+QY AI EM+GP            C+           K HP A+G+RNK
Sbjct: 110 PHIDSRVKILKKQYHAISEMLGPAGSGFGWNDKDKCVVVEKDVFDEWVKSHPSAKGLRNK 169

Query: 126 SFPYFDDLAIVFGKDRANGEGVLTPKDVATDLDK 139
            FPY D+L +VFG DRANG+G +   D+  D+DK
Sbjct: 170 PFPYHDELGLVFGNDRANGQGAMGLTDMVDDIDK 203

BLAST of Spg022066 vs. NCBI nr
Match: XP_026662506.2 (uncharacterized protein LOC113463064 [Phoenix dactylifera])

HSP 1 Score: 150.2 bits (378), Expect = 1.4e-32
Identity = 69/150 (46.00%), Postives = 92/150 (61.33%), Query Frame = 0

Query: 10  KHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLE 69
           K IWT  ED  LV+CL+++V  GGWK DNG FR G+ Q + ++M++KLP C ++    +E
Sbjct: 221 KRIWTKTEDAKLVECLIKVVNAGGWKGDNGIFRPGFHQHLERMMEKKLPGCRLRGNPHVE 280

Query: 70  YRVMILKRQYGAIVEMMGPTCI---------------------AKVHPHARGMRNKSFPY 129
             V +LK+QY AI EM+GP C+                      K HPHA G+RNK FPY
Sbjct: 281 NHVKLLKKQYNAIAEMLGPNCLEFGWNDRDKCVVADKDVYDLWMKSHPHAAGLRNKPFPY 340

Query: 130 FDDLAIVFGKDRANGEGVLTPKDVATDLDK 139
           ++DL+IVFGKDRANGEG   P D    ++K
Sbjct: 341 YEDLSIVFGKDRANGEGAENPVDACEQIEK 370

BLAST of Spg022066 vs. NCBI nr
Match: TYJ96933.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 1.8e-32
Identity = 76/144 (52.78%), Postives = 93/144 (64.58%), Query Frame = 0

Query: 1   MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRC 60
           MAS+ SK  KH WT ++D+ LV+CLLQLV+ GGW+A+N TF+  YL QV KLMKEK+PR 
Sbjct: 1   MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 60

Query: 61  DIQVTSTLEYRVMILKRQYGAIVEMMGPTCI---------------------AKVHPHAR 120
           +IQVT  LE RV  LK+QY AI +MMGP C                       K HP+AR
Sbjct: 61  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNAR 120

Query: 121 GMRNKSFPYFDDLAIVFGKDRANG 124
           G+ NK F YF DL IVFG+D+A G
Sbjct: 121 GLLNKPFAYFYDLEIVFGRDKATG 144

BLAST of Spg022066 vs. NCBI nr
Match: KAA0033487.1 (uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 1.8e-32
Identity = 80/155 (51.61%), Postives = 94/155 (60.65%), Query Frame = 0

Query: 1   MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRC 60
           MAS  SKV KH WT +EDE LV+CLLQLV+ G W+ DNGTF+ GYL QV KLMKEK+   
Sbjct: 86  MASINSKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILES 145

Query: 61  DIQVTSTLEYRVMILKRQYGAIVEMMGPTCI---------------------AKVHPHAR 120
           +IQVT  LE  V ILK+QY  I EMMGP C                       K H +AR
Sbjct: 146 NIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNAR 205

Query: 121 GMRNKSFPYFDDLAIVFGKDRANGEGVLTPKDVAT 135
            + NK FPYF DL IVFG+DRA G    TP ++ +
Sbjct: 206 YLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240

BLAST of Spg022066 vs. NCBI nr
Match: XP_008455678.1 (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 1.8e-32
Identity = 76/144 (52.78%), Postives = 93/144 (64.58%), Query Frame = 0

Query: 1   MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRC 60
           MAS+ SK  KH WT ++D+ LV+CLLQLV+ GGW+A+N TF+  YL QV KLMKEK+PR 
Sbjct: 33  MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 92

Query: 61  DIQVTSTLEYRVMILKRQYGAIVEMMGPTCI---------------------AKVHPHAR 120
           +IQVT  LE RV  LK+QY AI +MMGP C                       K HP+AR
Sbjct: 93  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNAR 152

Query: 121 GMRNKSFPYFDDLAIVFGKDRANG 124
           G+ NK F YF DL IVFG+D+A G
Sbjct: 153 GLLNKPFAYFYDLEIVFGRDKATG 176

BLAST of Spg022066 vs. ExPASy TrEMBL
Match: A0A5A7SW62 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00210 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 8.8e-33
Identity = 80/155 (51.61%), Postives = 94/155 (60.65%), Query Frame = 0

Query: 1   MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRC 60
           MAS  SKV KH WT +EDE LV+CLLQLV+ G W+ DNGTF+ GYL QV KLMKEK+   
Sbjct: 86  MASINSKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILES 145

Query: 61  DIQVTSTLEYRVMILKRQYGAIVEMMGPTCI---------------------AKVHPHAR 120
           +IQVT  LE  V ILK+QY  I EMMGP C                       K H +AR
Sbjct: 146 NIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNAR 205

Query: 121 GMRNKSFPYFDDLAIVFGKDRANGEGVLTPKDVAT 135
            + NK FPYF DL IVFG+DRA G    TP ++ +
Sbjct: 206 YLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240

BLAST of Spg022066 vs. ExPASy TrEMBL
Match: A0A5D3DTL0 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00340 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 8.8e-33
Identity = 80/155 (51.61%), Postives = 94/155 (60.65%), Query Frame = 0

Query: 1   MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRC 60
           MAS  SKV KH WT +EDE LV+CLLQLV+ G W+ DNGTF+ GYL QV KLMKEK+   
Sbjct: 86  MASINSKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILES 145

Query: 61  DIQVTSTLEYRVMILKRQYGAIVEMMGPTCI---------------------AKVHPHAR 120
           +IQVT  LE  V ILK+QY  I EMMGP C                       K H +AR
Sbjct: 146 NIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNAR 205

Query: 121 GMRNKSFPYFDDLAIVFGKDRANGEGVLTPKDVAT 135
            + NK FPYF DL IVFG+DRA G    TP ++ +
Sbjct: 206 YLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240

BLAST of Spg022066 vs. ExPASy TrEMBL
Match: A0A5D3BC95 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00380 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 8.8e-33
Identity = 76/144 (52.78%), Postives = 93/144 (64.58%), Query Frame = 0

Query: 1   MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRC 60
           MAS+ SK  KH WT ++D+ LV+CLLQLV+ GGW+A+N TF+  YL QV KLMKEK+PR 
Sbjct: 1   MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 60

Query: 61  DIQVTSTLEYRVMILKRQYGAIVEMMGPTCI---------------------AKVHPHAR 120
           +IQVT  LE RV  LK+QY AI +MMGP C                       K HP+AR
Sbjct: 61  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNAR 120

Query: 121 GMRNKSFPYFDDLAIVFGKDRANG 124
           G+ NK F YF DL IVFG+D+A G
Sbjct: 121 GLLNKPFAYFYDLEIVFGRDKATG 144

BLAST of Spg022066 vs. ExPASy TrEMBL
Match: A0A1S3C252 (uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 8.8e-33
Identity = 76/144 (52.78%), Postives = 93/144 (64.58%), Query Frame = 0

Query: 1   MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRC 60
           MAS+ SK  KH WT ++D+ LV+CLLQLV+ GGW+A+N TF+  YL QV KLMKEK+PR 
Sbjct: 33  MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 92

Query: 61  DIQVTSTLEYRVMILKRQYGAIVEMMGPTCI---------------------AKVHPHAR 120
           +IQVT  LE RV  LK+QY AI +MMGP C                       K HP+AR
Sbjct: 93  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNAR 152

Query: 121 GMRNKSFPYFDDLAIVFGKDRANG 124
           G+ NK F YF DL IVFG+D+A G
Sbjct: 153 GLLNKPFAYFYDLEIVFGRDKATG 176

BLAST of Spg022066 vs. ExPASy TrEMBL
Match: A0A5A7TQ37 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G003200 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.7e-31
Identity = 65/154 (42.21%), Postives = 96/154 (62.34%), Query Frame = 0

Query: 3   SSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDI 62
           S++++  +H+WT  E+  LV+CL++LV +GGWK+DNGTFR GYL Q++++M EKLP C +
Sbjct: 2   STSNRAPRHVWTREEEGTLVECLMELVSIGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQV 61

Query: 63  QVTSTLEYRVMILKRQYGAIVEMMGPTCI---------------------AKVHPHARGM 122
           + T+ ++ R+  LKR + AI EM GP CI                      + HP A+G+
Sbjct: 62  RATTVIDCRIKTLKRTFQAIAEMRGPACIGFGWNDEEKCIVAEKELCDNWVRSHPAAKGL 121

Query: 123 RNKSFPYFDDLAIVFGKDRANGEGVLTPKDVATD 136
            NK FPY+D+L  VFG+DRA G    T  DV ++
Sbjct: 122 LNKPFPYYDELTYVFGRDRATGRFAETFADVGSN 155

BLAST of Spg022066 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 9.1e-06
Identity = 37/156 (23.72%), Postives = 67/156 (42.95%), Query Frame = 0

Query: 1   MASSTSKVRK----HIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEK 60
           M  S  K RK    + W+P E ++LVQ L++ +    W+  NGT         L +  + 
Sbjct: 1   MGDSQPKKRKKGDYNPWSPEETKLLVQLLVEGIN-NNWRDSNGTISK------LTVETKF 60

Query: 61  LPRCDIQVTSTLEY-----RVMILKRQYGAIVEMMGPTC--------------------I 120
           +P  + +   +  Y     R+  LK QY + +++   +                      
Sbjct: 61  MPEINKEFCRSKNYNHYLSRMKYLKIQYQSCLDLQRFSSGFGWDPLTKRFTASDEVWSDY 120

Query: 121 AKVHPHARGMRNKSFPYFDDLAIVFGKDRANGEGVL 128
            K HP+ + +R  +F +FD+L I+FG+  A G+  +
Sbjct: 121 LKAHPNNKQLRYDTFEFFDELQIIFGEGVATGKNAI 149

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_024022021.15.6e-3447.40uncharacterized protein LOC112091787 [Morus notabilis][more]
XP_026662506.21.4e-3246.00uncharacterized protein LOC113463064 [Phoenix dactylifera][more]
TYJ96933.11.8e-3252.78retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0033487.11.8e-3251.61uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa][more]
XP_008455678.11.8e-3252.78PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SW628.8e-3351.61Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3DTL08.8e-3351.61Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3BC958.8e-3352.78Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3C2528.8e-3352.78uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 P... [more]
A0A5A7TQ371.7e-3142.21Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
AT5G27260.19.1e-0623.72unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 2..139
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 2..139

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg022066.1Spg022066.1mRNA