Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCATCCACTTCGAAAGTCCGTAAACATATTTGGACACCAATGGAGGATGAAGTTTTGGTCCAGTGCCTGTTACAGTTAGTTCAAGTAGGTGGTTGGAAGGCTGACAACGGGACCTTTAGATCGGGGTATTTGCAACAAGTATTGAAGTTGATGAAAGAGAAATTGCCAAGATGCGACATACAAGTGACCTCGACCTTGGAGTACAGAGTGATGATCCTAAAAAGGCAATACGGTGCCATTGTCGAAATGATGGGCCCCACTTGCATCGCGAAAGTGCATTGAGGCGGAGAAATCAGTCTTTGATGATTGGGTCAAGGTAAAAATTCGAACATGATCCACATAGAATTCAAAAATATTATATGATTATATAGGTTAATTGTGTTAACATATTGAATATAGGTACACCCACATGCTCGAGGGATGAGGAACAAGTCATTCCCCTACTTCGACGACCTAGCAATTGTGTTCGGGAAGGATAGGGCTAATGGAGAAGGTGTTTTGACTCCGAAAGATGTGGCTACCGATCTGGATAAGTGCTGCATGTGTATCTTGGGAAGGCAACCATGA
mRNA sequence
ATGGCATCATCCACTTCGAAAGTCCGTAAACATATTTGGACACCAATGGAGGATGAAGTTTTGGTCCAGTGCCTGTTACAGTTAGTTCAAGTAGGTGGTTGGAAGGCTGACAACGGGACCTTTAGATCGGGGTATTTGCAACAAGTATTGAAGTTGATGAAAGAGAAATTGCCAAGATGCGACATACAAGTGACCTCGACCTTGGAGTACAGAGTGATGATCCTAAAAAGGCAATACGGTGCCATTGTCGAAATGATGGGCCCCACTTGCATCGCGAAAGTACACCCACATGCTCGAGGGATGAGGAACAAGTCATTCCCCTACTTCGACGACCTAGCAATTGTGTTCGGGAAGGATAGGGCTAATGGAGAAGGTGTTTTGACTCCGAAAGATGTGGCTACCGATCTGGATAAGTGCTGCATGTGTATCTTGGGAAGGCAACCATGA
Coding sequence (CDS)
ATGGCATCATCCACTTCGAAAGTCCGTAAACATATTTGGACACCAATGGAGGATGAAGTTTTGGTCCAGTGCCTGTTACAGTTAGTTCAAGTAGGTGGTTGGAAGGCTGACAACGGGACCTTTAGATCGGGGTATTTGCAACAAGTATTGAAGTTGATGAAAGAGAAATTGCCAAGATGCGACATACAAGTGACCTCGACCTTGGAGTACAGAGTGATGATCCTAAAAAGGCAATACGGTGCCATTGTCGAAATGATGGGCCCCACTTGCATCGCGAAAGTACACCCACATGCTCGAGGGATGAGGAACAAGTCATTCCCCTACTTCGACGACCTAGCAATTGTGTTCGGGAAGGATAGGGCTAATGGAGAAGGTGTTTTGACTCCGAAAGATGTGGCTACCGATCTGGATAAGTGCTGCATGTGTATCTTGGGAAGGCAACCATGA
Protein sequence
MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYRVMILKRQYGAIVEMMGPTCIAKVHPHARGMRNKSFPYFDDLAIVFGKDRANGEGVLTPKDVATDLDKCCMCILGRQP
Homology
BLAST of Spg022066 vs. NCBI nr
Match:
XP_024022021.1 (uncharacterized protein LOC112091787 [Morus notabilis])
HSP 1 Score: 154.8 bits (390), Expect = 5.6e-34
Identity = 73/154 (47.40%), Postives = 97/154 (62.99%), Query Frame = 0
Query: 6 SKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDIQVT 65
+ VRKH WT +ED LV+CLL + G WKADNGTF+ GYLQQ+ K+M EK+P+C ++
Sbjct: 50 ANVRKHQWTTLEDSKLVECLLDMANSGKWKADNGTFKPGYLQQLEKMMNEKIPQCGLKAQ 109
Query: 66 STLEYRVMILKRQYGAIVEMMGPT-----------CI----------AKVHPHARGMRNK 125
++ RV ILK+QY AI EM+GP C+ K HP A+G+RNK
Sbjct: 110 PHIDSRVKILKKQYHAISEMLGPAGSGFGWNDKDKCVVVEKDVFDEWVKSHPSAKGLRNK 169
Query: 126 SFPYFDDLAIVFGKDRANGEGVLTPKDVATDLDK 139
FPY D+L +VFG DRANG+G + D+ D+DK
Sbjct: 170 PFPYHDELGLVFGNDRANGQGAMGLTDMVDDIDK 203
BLAST of Spg022066 vs. NCBI nr
Match:
XP_026662506.2 (uncharacterized protein LOC113463064 [Phoenix dactylifera])
HSP 1 Score: 150.2 bits (378), Expect = 1.4e-32
Identity = 69/150 (46.00%), Postives = 92/150 (61.33%), Query Frame = 0
Query: 10 KHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLE 69
K IWT ED LV+CL+++V GGWK DNG FR G+ Q + ++M++KLP C ++ +E
Sbjct: 221 KRIWTKTEDAKLVECLIKVVNAGGWKGDNGIFRPGFHQHLERMMEKKLPGCRLRGNPHVE 280
Query: 70 YRVMILKRQYGAIVEMMGPTCI---------------------AKVHPHARGMRNKSFPY 129
V +LK+QY AI EM+GP C+ K HPHA G+RNK FPY
Sbjct: 281 NHVKLLKKQYNAIAEMLGPNCLEFGWNDRDKCVVADKDVYDLWMKSHPHAAGLRNKPFPY 340
Query: 130 FDDLAIVFGKDRANGEGVLTPKDVATDLDK 139
++DL+IVFGKDRANGEG P D ++K
Sbjct: 341 YEDLSIVFGKDRANGEGAENPVDACEQIEK 370
BLAST of Spg022066 vs. NCBI nr
Match:
TYJ96933.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 149.8 bits (377), Expect = 1.8e-32
Identity = 76/144 (52.78%), Postives = 93/144 (64.58%), Query Frame = 0
Query: 1 MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRC 60
MAS+ SK KH WT ++D+ LV+CLLQLV+ GGW+A+N TF+ YL QV KLMKEK+PR
Sbjct: 1 MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 60
Query: 61 DIQVTSTLEYRVMILKRQYGAIVEMMGPTCI---------------------AKVHPHAR 120
+IQVT LE RV LK+QY AI +MMGP C K HP+AR
Sbjct: 61 NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNAR 120
Query: 121 GMRNKSFPYFDDLAIVFGKDRANG 124
G+ NK F YF DL IVFG+D+A G
Sbjct: 121 GLLNKPFAYFYDLEIVFGRDKATG 144
BLAST of Spg022066 vs. NCBI nr
Match:
KAA0033487.1 (uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa])
HSP 1 Score: 149.8 bits (377), Expect = 1.8e-32
Identity = 80/155 (51.61%), Postives = 94/155 (60.65%), Query Frame = 0
Query: 1 MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRC 60
MAS SKV KH WT +EDE LV+CLLQLV+ G W+ DNGTF+ GYL QV KLMKEK+
Sbjct: 86 MASINSKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILES 145
Query: 61 DIQVTSTLEYRVMILKRQYGAIVEMMGPTCI---------------------AKVHPHAR 120
+IQVT LE V ILK+QY I EMMGP C K H +AR
Sbjct: 146 NIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNAR 205
Query: 121 GMRNKSFPYFDDLAIVFGKDRANGEGVLTPKDVAT 135
+ NK FPYF DL IVFG+DRA G TP ++ +
Sbjct: 206 YLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240
BLAST of Spg022066 vs. NCBI nr
Match:
XP_008455678.1 (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])
HSP 1 Score: 149.8 bits (377), Expect = 1.8e-32
Identity = 76/144 (52.78%), Postives = 93/144 (64.58%), Query Frame = 0
Query: 1 MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRC 60
MAS+ SK KH WT ++D+ LV+CLLQLV+ GGW+A+N TF+ YL QV KLMKEK+PR
Sbjct: 33 MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 92
Query: 61 DIQVTSTLEYRVMILKRQYGAIVEMMGPTCI---------------------AKVHPHAR 120
+IQVT LE RV LK+QY AI +MMGP C K HP+AR
Sbjct: 93 NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNAR 152
Query: 121 GMRNKSFPYFDDLAIVFGKDRANG 124
G+ NK F YF DL IVFG+D+A G
Sbjct: 153 GLLNKPFAYFYDLEIVFGRDKATG 176
BLAST of Spg022066 vs. ExPASy TrEMBL
Match:
A0A5A7SW62 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00210 PE=4 SV=1)
HSP 1 Score: 149.8 bits (377), Expect = 8.8e-33
Identity = 80/155 (51.61%), Postives = 94/155 (60.65%), Query Frame = 0
Query: 1 MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRC 60
MAS SKV KH WT +EDE LV+CLLQLV+ G W+ DNGTF+ GYL QV KLMKEK+
Sbjct: 86 MASINSKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILES 145
Query: 61 DIQVTSTLEYRVMILKRQYGAIVEMMGPTCI---------------------AKVHPHAR 120
+IQVT LE V ILK+QY I EMMGP C K H +AR
Sbjct: 146 NIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNAR 205
Query: 121 GMRNKSFPYFDDLAIVFGKDRANGEGVLTPKDVAT 135
+ NK FPYF DL IVFG+DRA G TP ++ +
Sbjct: 206 YLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240
BLAST of Spg022066 vs. ExPASy TrEMBL
Match:
A0A5D3DTL0 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00340 PE=4 SV=1)
HSP 1 Score: 149.8 bits (377), Expect = 8.8e-33
Identity = 80/155 (51.61%), Postives = 94/155 (60.65%), Query Frame = 0
Query: 1 MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRC 60
MAS SKV KH WT +EDE LV+CLLQLV+ G W+ DNGTF+ GYL QV KLMKEK+
Sbjct: 86 MASINSKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILES 145
Query: 61 DIQVTSTLEYRVMILKRQYGAIVEMMGPTCI---------------------AKVHPHAR 120
+IQVT LE V ILK+QY I EMMGP C K H +AR
Sbjct: 146 NIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNAR 205
Query: 121 GMRNKSFPYFDDLAIVFGKDRANGEGVLTPKDVAT 135
+ NK FPYF DL IVFG+DRA G TP ++ +
Sbjct: 206 YLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240
BLAST of Spg022066 vs. ExPASy TrEMBL
Match:
A0A5D3BC95 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00380 PE=4 SV=1)
HSP 1 Score: 149.8 bits (377), Expect = 8.8e-33
Identity = 76/144 (52.78%), Postives = 93/144 (64.58%), Query Frame = 0
Query: 1 MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRC 60
MAS+ SK KH WT ++D+ LV+CLLQLV+ GGW+A+N TF+ YL QV KLMKEK+PR
Sbjct: 1 MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 60
Query: 61 DIQVTSTLEYRVMILKRQYGAIVEMMGPTCI---------------------AKVHPHAR 120
+IQVT LE RV LK+QY AI +MMGP C K HP+AR
Sbjct: 61 NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNAR 120
Query: 121 GMRNKSFPYFDDLAIVFGKDRANG 124
G+ NK F YF DL IVFG+D+A G
Sbjct: 121 GLLNKPFAYFYDLEIVFGRDKATG 144
BLAST of Spg022066 vs. ExPASy TrEMBL
Match:
A0A1S3C252 (uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 PE=4 SV=1)
HSP 1 Score: 149.8 bits (377), Expect = 8.8e-33
Identity = 76/144 (52.78%), Postives = 93/144 (64.58%), Query Frame = 0
Query: 1 MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRC 60
MAS+ SK KH WT ++D+ LV+CLLQLV+ GGW+A+N TF+ YL QV KLMKEK+PR
Sbjct: 33 MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 92
Query: 61 DIQVTSTLEYRVMILKRQYGAIVEMMGPTCI---------------------AKVHPHAR 120
+IQVT LE RV LK+QY AI +MMGP C K HP+AR
Sbjct: 93 NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNAR 152
Query: 121 GMRNKSFPYFDDLAIVFGKDRANG 124
G+ NK F YF DL IVFG+D+A G
Sbjct: 153 GLLNKPFAYFYDLEIVFGRDKATG 176
BLAST of Spg022066 vs. ExPASy TrEMBL
Match:
A0A5A7TQ37 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G003200 PE=4 SV=1)
HSP 1 Score: 145.6 bits (366), Expect = 1.7e-31
Identity = 65/154 (42.21%), Postives = 96/154 (62.34%), Query Frame = 0
Query: 3 SSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEKLPRCDI 62
S++++ +H+WT E+ LV+CL++LV +GGWK+DNGTFR GYL Q++++M EKLP C +
Sbjct: 2 STSNRAPRHVWTREEEGTLVECLMELVSIGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQV 61
Query: 63 QVTSTLEYRVMILKRQYGAIVEMMGPTCI---------------------AKVHPHARGM 122
+ T+ ++ R+ LKR + AI EM GP CI + HP A+G+
Sbjct: 62 RATTVIDCRIKTLKRTFQAIAEMRGPACIGFGWNDEEKCIVAEKELCDNWVRSHPAAKGL 121
Query: 123 RNKSFPYFDDLAIVFGKDRANGEGVLTPKDVATD 136
NK FPY+D+L VFG+DRA G T DV ++
Sbjct: 122 LNKPFPYYDELTYVFGRDRATGRFAETFADVGSN 155
BLAST of Spg022066 vs. TAIR 10
Match:
AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )
HSP 1 Score: 47.8 bits (112), Expect = 9.1e-06
Identity = 37/156 (23.72%), Postives = 67/156 (42.95%), Query Frame = 0
Query: 1 MASSTSKVRK----HIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVLKLMKEK 60
M S K RK + W+P E ++LVQ L++ + W+ NGT L + +
Sbjct: 1 MGDSQPKKRKKGDYNPWSPEETKLLVQLLVEGIN-NNWRDSNGTISK------LTVETKF 60
Query: 61 LPRCDIQVTSTLEY-----RVMILKRQYGAIVEMMGPTC--------------------I 120
+P + + + Y R+ LK QY + +++ +
Sbjct: 61 MPEINKEFCRSKNYNHYLSRMKYLKIQYQSCLDLQRFSSGFGWDPLTKRFTASDEVWSDY 120
Query: 121 AKVHPHARGMRNKSFPYFDDLAIVFGKDRANGEGVL 128
K HP+ + +R +F +FD+L I+FG+ A G+ +
Sbjct: 121 LKAHPNNKQLRYDTFEFFDELQIIFGEGVATGKNAI 149
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_024022021.1 | 5.6e-34 | 47.40 | uncharacterized protein LOC112091787 [Morus notabilis] | [more] |
XP_026662506.2 | 1.4e-32 | 46.00 | uncharacterized protein LOC113463064 [Phoenix dactylifera] | [more] |
TYJ96933.1 | 1.8e-32 | 52.78 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0033487.1 | 1.8e-32 | 51.61 | uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa] | [more] |
XP_008455678.1 | 1.8e-32 | 52.78 | PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7SW62 | 8.8e-33 | 51.61 | Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A5D3DTL0 | 8.8e-33 | 51.61 | Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A5D3BC95 | 8.8e-33 | 52.78 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3C252 | 8.8e-33 | 52.78 | uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 P... | [more] |
A0A5A7TQ37 | 1.7e-31 | 42.21 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
AT5G27260.1 | 9.1e-06 | 23.72 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |