Spg022045 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg022045
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionBeta-galactosidase
Locationscaffold2: 4420614 .. 4421376 (+)
RNA-Seq ExpressionSpg022045
SyntenySpg022045
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCATTGTGGAGCAAATTTTGAGTTTTATAATGGAGCAAATAGAGGTGATAATGTGTTGGGTTACAAGCCTGAGCTTACTTCTTATGATTATGTAAGAGTGATATTAATTCTCCTTTGCTATTTCATTTCCATTTATTTTTTCCTTTCACTCATCTGTATAATTGTGAAACGTAAATATTAAGTCACGCTTGATATTTTCCAGGATGCACCATTTAAGGAATCTTGGTGACATTGACAATGCTAAATATGGAGGTAATTTTCTCCAATGTCTCCATCTATTTCCCTTTTTCTTTACACTTTTTTTGGATAAACCAAAACTTTATTTCTCCCAAGCATGTACTTTTGAGCCATCCACCAAACTTAGGCTTAATCAAATTTCTAACTTCCACTGTTTTGATACCTTTAGCAATTCGAAGGGTTATACAACGCTACAGTGGAACATCGCTTCCTTCCATTCCTTCTAATGCCGATTCACTTGCAGAAAAGTGCATTTTCATTTGATCTGATCCATAAGATAGATCTCGTCAATGTTGTGTTGCGCTATCTGACGAACCACTGTTAATGGAATCTGTGGATCAGGTGCGTTTGAATATGCCACTCCTGTCATGAATGAGCCAAGGTTGTTGAAATACTTGATTCTAATAAGCTATATGTTTTTTGGTCAGAGCTTTGGATTTCTATTATATGCGACAGAATATGTGGCCAAGGATAATGCAGATGGACACATTTTATTTATACTAGAGGTACTAAATTATTGA

mRNA sequence

ATGGCTCATTGTGGAGCAAATTTTGAGTTTTATAATGGAGCAAATAGAGGTGATAATGTGTTGGGTTACAAGCCTGAGCTTACTTCTTATGATTATTCACGCTTGATATTTTCCAGGATGCACCATTTAAGGAATCTTGGTGACATTGACAATGCTAAATATGGAGGTGCGTTTGAATATGCCACTCCTGTCATGAATGAGCCAAGGTTGTTGAAATACTTGATTCTAATAAGCTATATGTTTTTTGGTCAGAGCTTTGGATTTCTATTATATGCGACAGAATATGTGGCCAAGGATAATGCAGATGGACACATTTTATTTATACTAGAGGTACTAAATTATTGA

Coding sequence (CDS)

ATGGCTCATTGTGGAGCAAATTTTGAGTTTTATAATGGAGCAAATAGAGGTGATAATGTGTTGGGTTACAAGCCTGAGCTTACTTCTTATGATTATTCACGCTTGATATTTTCCAGGATGCACCATTTAAGGAATCTTGGTGACATTGACAATGCTAAATATGGAGGTGCGTTTGAATATGCCACTCCTGTCATGAATGAGCCAAGGTTGTTGAAATACTTGATTCTAATAAGCTATATGTTTTTTGGTCAGAGCTTTGGATTTCTATTATATGCGACAGAATATGTGGCCAAGGATAATGCAGATGGACACATTTTATTTATACTAGAGGTACTAAATTATTGA

Protein sequence

MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAKYGGAFEYATPVMNEPRLLKYLILISYMFFGQSFGFLLYATEYVAKDNADGHILFILEVLNY
Homology
[Close]
BLAST of Spg022045 vs. NCBI nr
Match: XP_011652351.1 (beta-galactosidase 17 [Cucumis sativus] >KGN59817.1 hypothetical protein Csa_001250 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-17
Identity = 65/145 (44.83%), Postives = 74/145 (51.03%), Query Frame = 0 

Query: 1   MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAK------- 60
           MAH G NF FYNGAN G++VL YKP+LTSYDY   I       +  GD+DNAK       
Sbjct: 346 MAHGGTNFGFYNGANTGNDVLDYKPDLTSYDYDAPI-------KESGDVDNAKYEAIRRV 405

Query: 61  ---YGGAFEYATPVMNEP------RLLKYLIL------------------ISYMFFGQSF 112
              Y GA   + P  NE       +L K   L                  +S     QSF
Sbjct: 406 IQHYSGALIPSVPSNNEKIGYGPIQLQKVAFLFDLIHMMDPVDVAVSEEPLSMESMDQSF 465

[Close]
BLAST of Spg022045 vs. NCBI nr
Match: XP_038875608.1 (beta-galactosidase 17 [Benincasa hispida])

HSP 1 Score: 99.4 bits (246), Expect = 2.2e-17
Identity = 66/145 (45.52%), Postives = 73/145 (50.34%), Query Frame = 0 

Query: 1   MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAK------- 60
           MAH G NF FYNGAN GD+VL YKP+LTSYDY   I       +  GDIDNAK       
Sbjct: 346 MAHGGTNFGFYNGANTGDDVLDYKPDLTSYDYDAPI-------KESGDIDNAKFEAIRRV 405

Query: 61  ---YGGAFEYATPVMNEP------RLLKYLIL------------------ISYMFFGQSF 112
              Y GA   + P  NE        L K   L                  +S     QSF
Sbjct: 406 IQHYSGALLPSVPSNNEKIGYGPIHLQKSAFLFDLIHMMNPVDVAVSEEPLSMEAMDQSF 465

[Close]
BLAST of Spg022045 vs. NCBI nr
Match: XP_008464017.1 (PREDICTED: beta-galactosidase 17 isoform X2 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-16
Identity = 64/145 (44.14%), Postives = 74/145 (51.03%), Query Frame = 0 

Query: 1   MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAK------- 60
           MAH G NF FYNGAN G++VL YKP+LTSYDY   I       +  GD+DNAK       
Sbjct: 346 MAHGGTNFGFYNGANTGNDVLDYKPDLTSYDYDAPI-------KESGDVDNAKYEAIRRV 405

Query: 61  ---YGGAFEYATPVMNEP------RLLKYLIL------------------ISYMFFGQSF 112
              Y GA   + P  NE       +L K   L                  +S     +SF
Sbjct: 406 IQHYSGALIPSVPSNNEKIGYGPIQLQKVAFLFDLIHMMDPVDVAVSEEPLSMESTDRSF 465

[Close]
BLAST of Spg022045 vs. NCBI nr
Match: KAA0036665.1 (beta-galactosidase 17 isoform X2 [Cucumis melo var. makuwa] >TYK29905.1 beta-galactosidase 17 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-16
Identity = 64/145 (44.14%), Postives = 74/145 (51.03%), Query Frame = 0 

Query: 1   MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAK------- 60
           MAH G NF FYNGAN G++VL YKP+LTSYDY   I       +  GD+DNAK       
Sbjct: 337 MAHGGTNFGFYNGANTGNDVLDYKPDLTSYDYDAPI-------KESGDVDNAKYEAIRRV 396

Query: 61  ---YGGAFEYATPVMNEP------RLLKYLIL------------------ISYMFFGQSF 112
              Y GA   + P  NE       +L K   L                  +S     +SF
Sbjct: 397 IQHYSGALIPSVPSNNEKIGYGPIQLQKVAFLFDLIHMMDPVDVAVSEEPLSMESTDRSF 456

[Close]
BLAST of Spg022045 vs. NCBI nr
Match: XP_022148250.1 (beta-galactosidase 17 isoform X2 [Momordica charantia])

HSP 1 Score: 94.7 bits (234), Expect = 5.3e-16
Identity = 64/145 (44.14%), Postives = 70/145 (48.28%), Query Frame = 0 

Query: 1   MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAK------- 60
           MAH G NF FYNGAN G +VL YKP+LTSYDY   I       +  GDIDNAK       
Sbjct: 345 MAHGGTNFGFYNGANTGGDVLDYKPDLTSYDYDAPI-------KESGDIDNAKYKAIRRV 404

Query: 61  ---YGGAFEYATPVMNEP------RLLKYLILISYMFF------------------GQSF 112
              Y GA   + P   E        L K   L   +                     QSF
Sbjct: 405 IQHYSGALLPSVPSNIEKIGYGPIHLQKSAFLFDMIHMIDPLDVATSEEPLPMESVDQSF 464

[Close]
BLAST of Spg022045 vs. ExPASy Swiss-Prot
Match: Q0DGD7 (Beta-galactosidase 8 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0539400 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.6e-09
Identity = 45/136 (33.09%), Postives = 57/136 (41.91%), Query Frame = 0 

Query: 1   MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAKYGGAFEY 60
           MAH G NF FYNGAN G N   YK +LTSYDY   I       R  GD+ NAKY      
Sbjct: 311 MAHGGTNFGFYNGANTGQNESDYKADLTSYDYDAPI-------REYGDVHNAKYKALRRV 370

Query: 61  -----ATPVMNEPRLLK---YLIL---------------------------ISYMFFGQS 102
                  P++  P  ++   Y ++                           +S    GQ 
Sbjct: 371 IHECTGIPLLQLPSKIERASYGLVEVQKVASLFDVIHNISDALKVAFSEQPLSMELMGQM 430

[Close]
BLAST of Spg022045 vs. ExPASy Swiss-Prot
Match: Q93Z24 (Beta-galactosidase 17 OS=Arabidopsis thaliana OX=3702 GN=BGAL17 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-08
Identity = 46/136 (33.82%), Postives = 57/136 (41.91%), Query Frame = 0 

Query: 1   MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAK------- 60
           M H G NF FYNGAN G     YKP+LTSYDY   I       +  GDIDN K       
Sbjct: 340 MVHGGTNFGFYNGANTGSEESDYKPDLTSYDYDAPI-------KESGDIDNPKFQALQRV 399

Query: 61  --------------------YGG-AFEYATPV-----MNEPR-LLKYLILISYMFFGQSF 103
                               YG    +  T +     M +P  ++     IS    GQ F
Sbjct: 400 IKKYNASPHPISPSNKQRKAYGSIKMQMTTSLFDLVRMTDPADVITSANPISMESVGQMF 459

[Close]
BLAST of Spg022045 vs. ExPASy TrEMBL
Match: A0A0A0LGB2 (Beta-galactosidase OS=Cucumis sativus OX=3659 GN=Csa_3G848260 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 8.0e-18
Identity = 65/145 (44.83%), Postives = 74/145 (51.03%), Query Frame = 0 

Query: 1   MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAK------- 60
           MAH G NF FYNGAN G++VL YKP+LTSYDY   I       +  GD+DNAK       
Sbjct: 346 MAHGGTNFGFYNGANTGNDVLDYKPDLTSYDYDAPI-------KESGDVDNAKYEAIRRV 405

Query: 61  ---YGGAFEYATPVMNEP------RLLKYLIL------------------ISYMFFGQSF 112
              Y GA   + P  NE       +L K   L                  +S     QSF
Sbjct: 406 IQHYSGALIPSVPSNNEKIGYGPIQLQKVAFLFDLIHMMDPVDVAVSEEPLSMESMDQSF 465

[Close]
BLAST of Spg022045 vs. ExPASy TrEMBL
Match: A0A5D3E3M2 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10771G00010 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.2e-17
Identity = 64/145 (44.14%), Postives = 74/145 (51.03%), Query Frame = 0 

Query: 1   MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAK------- 60
           MAH G NF FYNGAN G++VL YKP+LTSYDY   I       +  GD+DNAK       
Sbjct: 337 MAHGGTNFGFYNGANTGNDVLDYKPDLTSYDYDAPI-------KESGDVDNAKYEAIRRV 396

Query: 61  ---YGGAFEYATPVMNEP------RLLKYLIL------------------ISYMFFGQSF 112
              Y GA   + P  NE       +L K   L                  +S     +SF
Sbjct: 397 IQHYSGALIPSVPSNNEKIGYGPIQLQKVAFLFDLIHMMDPVDVAVSEEPLSMESTDRSF 456

[Close]
BLAST of Spg022045 vs. ExPASy TrEMBL
Match: A0A1S3CKJ1 (Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103502003 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.2e-17
Identity = 64/145 (44.14%), Postives = 74/145 (51.03%), Query Frame = 0 

Query: 1   MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAK------- 60
           MAH G NF FYNGAN G++VL YKP+LTSYDY   I       +  GD+DNAK       
Sbjct: 346 MAHGGTNFGFYNGANTGNDVLDYKPDLTSYDYDAPI-------KESGDVDNAKYEAIRRV 405

Query: 61  ---YGGAFEYATPVMNEP------RLLKYLIL------------------ISYMFFGQSF 112
              Y GA   + P  NE       +L K   L                  +S     +SF
Sbjct: 406 IQHYSGALIPSVPSNNEKIGYGPIQLQKVAFLFDLIHMMDPVDVAVSEEPLSMESTDRSF 465

[Close]
BLAST of Spg022045 vs. ExPASy TrEMBL
Match: A0A6J1HX51 (Beta-galactosidase OS=Cucurbita maxima OX=3661 GN=LOC111467663 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.6e-16
Identity = 63/145 (43.45%), Postives = 71/145 (48.97%), Query Frame = 0 

Query: 1   MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAK------- 60
           MAH G NF FYNGAN GD+ L YKP+LTSYDY   I       +  GDIDNAK       
Sbjct: 346 MAHGGTNFGFYNGANTGDSALDYKPDLTSYDYDAPI-------KESGDIDNAKYDAIRRV 405

Query: 61  ---YGGAFEYATPVMNEPRLLKYLILISYMFF------------------------GQSF 112
              Y GA   + P   E      + L    FF                         QSF
Sbjct: 406 IQRYSGALLPSAPSNIEKIGYGPIYLQKSAFFFDLIHMIDSVDVFISEEPLSMESVDQSF 465

[Close]
BLAST of Spg022045 vs. ExPASy TrEMBL
Match: A0A6J1D2E3 (Beta-galactosidase OS=Momordica charantia OX=3673 GN=LOC111016956 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.6e-16
Identity = 64/145 (44.14%), Postives = 70/145 (48.28%), Query Frame = 0 

Query: 1   MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAK------- 60
           MAH G NF FYNGAN G +VL YKP+LTSYDY   I       +  GDIDNAK       
Sbjct: 345 MAHGGTNFGFYNGANTGGDVLDYKPDLTSYDYDAPI-------KESGDIDNAKYKAIRRV 404

Query: 61  ---YGGAFEYATPVMNEP------RLLKYLILISYMFF------------------GQSF 112
              Y GA   + P   E        L K   L   +                     QSF
Sbjct: 405 IQHYSGALLPSVPSNIEKIGYGPIHLQKSAFLFDMIHMIDPLDVATSEEPLPMESVDQSF 464

[Close]
BLAST of Spg022045 vs. TAIR 10
Match: AT1G72990.1 (beta-galactosidase 17 )

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-09
Identity = 46/136 (33.82%), Postives = 57/136 (41.91%), Query Frame = 0 

Query: 1   MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAK------- 60
           M H G NF FYNGAN G     YKP+LTSYDY   I       +  GDIDN K       
Sbjct: 340 MVHGGTNFGFYNGANTGSEESDYKPDLTSYDYDAPI-------KESGDIDNPKFQALQRV 399

Query: 61  --------------------YGG-AFEYATPV-----MNEPR-LLKYLILISYMFFGQSF 103
                               YG    +  T +     M +P  ++     IS    GQ F
Sbjct: 400 IKKYNASPHPISPSNKQRKAYGSIKMQMTTSLFDLVRMTDPADVITSANPISMESVGQMF 459

[Close]
BLAST of Spg022045 vs. TAIR 10
Match: AT1G72990.2 (beta-galactosidase 17 )

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-09
Identity = 46/136 (33.82%), Postives = 57/136 (41.91%), Query Frame = 0 

Query: 1   MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAK------- 60
           M H G NF FYNGAN G     YKP+LTSYDY   I       +  GDIDN K       
Sbjct: 278 MVHGGTNFGFYNGANTGSEESDYKPDLTSYDYDAPI-------KESGDIDNPKFQALQRV 337

Query: 61  --------------------YGG-AFEYATPV-----MNEPR-LLKYLILISYMFFGQSF 103
                               YG    +  T +     M +P  ++     IS    GQ F
Sbjct: 338 IKKYNASPHPISPSNKQRKAYGSIKMQMTTSLFDLVRMTDPADVITSANPISMESVGQMF 397

The following BLAST results are available for this feature:
BLAST of Spg022045 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011652351.11.7e-1744.83beta-galactosidase 17 [Cucumis sativus] >KGN59817.1 hypothetical protein Csa_001... [more]
XP_038875608.12.2e-1745.52beta-galactosidase 17 [Benincasa hispida][more]
XP_008464017.11.1e-1644.14PREDICTED: beta-galactosidase 17 isoform X2 [Cucumis melo][more]
KAA0036665.11.1e-1644.14beta-galactosidase 17 isoform X2 [Cucumis melo var. makuwa] >TYK29905.1 beta-gal... [more]
XP_022148250.15.3e-1644.14beta-galactosidase 17 isoform X2 [Momordica charantia][more]
BLAST of Spg022045 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q0DGD76.6e-0933.09Beta-galactosidase 8 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0539400 PE... [more]
Q93Z241.9e-0833.82Beta-galactosidase 17 OS=Arabidopsis thaliana OX=3702 GN=BGAL17 PE=2 SV=1[more]
BLAST of Spg022045 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGB28.0e-1844.83Beta-galactosidase OS=Cucumis sativus OX=3659 GN=Csa_3G848260 PE=3 SV=1[more]
A0A5D3E3M25.2e-1744.14Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10771... [more]
A0A1S3CKJ15.2e-1744.14Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103502003 PE=3 SV=1[more]
A0A6J1HX512.6e-1643.45Beta-galactosidase OS=Cucurbita maxima OX=3661 GN=LOC111467663 PE=3 SV=1[more]
A0A6J1D2E32.6e-1644.14Beta-galactosidase OS=Momordica charantia OX=3673 GN=LOC111016956 PE=3 SV=1[more]
BLAST of Spg022045 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G72990.11.4e-0933.82beta-galactosidase 17 [more]
AT1G72990.21.4e-0933.82beta-galactosidase 17 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.120.260coord: 1..46
e-value: 1.5E-7
score: 33.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg022045.1Spg022045.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity
molecular_function GO:0016787 hydrolase activity