Spg022045 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg022045
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Beta-galactosidase
Location	scaffold2: 4420614 .. 4421376 (+)
RNA-Seq Expression	Spg022045
Synteny	Spg022045

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCATTGTGGAGCAAATTTTGAGTTTTATAATGGAGCAAATAGAGGTGATAATGTGTTGGGTTACAAGCCTGAGCTTACTTCTTATGATTATGTAAGAGTGATATTAATTCTCCTTTGCTATTTCATTTCCATTTATTTTTTCCTTTCACTCATCTGTATAATTGTGAAACGTAAATATTAAGTCACGCTTGATATTTTCCAGGATGCACCATTTAAGGAATCTTGGTGACATTGACAATGCTAAATATGGAGGTAATTTTCTCCAATGTCTCCATCTATTTCCCTTTTTCTTTACACTTTTTTTGGATAAACCAAAACTTTATTTCTCCCAAGCATGTACTTTTGAGCCATCCACCAAACTTAGGCTTAATCAAATTTCTAACTTCCACTGTTTTGATACCTTTAGCAATTCGAAGGGTTATACAACGCTACAGTGGAACATCGCTTCCTTCCATTCCTTCTAATGCCGATTCACTTGCAGAAAAGTGCATTTTCATTTGATCTGATCCATAAGATAGATCTCGTCAATGTTGTGTTGCGCTATCTGACGAACCACTGTTAATGGAATCTGTGGATCAGGTGCGTTTGAATATGCCACTCCTGTCATGAATGAGCCAAGGTTGTTGAAATACTTGATTCTAATAAGCTATATGTTTTTTGGTCAGAGCTTTGGATTTCTATTATATGCGACAGAATATGTGGCCAAGGATAATGCAGATGGACACATTTTATTTATACTAGAGGTACTAAATTATTGA

mRNA sequence

ATGGCTCATTGTGGAGCAAATTTTGAGTTTTATAATGGAGCAAATAGAGGTGATAATGTGTTGGGTTACAAGCCTGAGCTTACTTCTTATGATTATTCACGCTTGATATTTTCCAGGATGCACCATTTAAGGAATCTTGGTGACATTGACAATGCTAAATATGGAGGTGCGTTTGAATATGCCACTCCTGTCATGAATGAGCCAAGGTTGTTGAAATACTTGATTCTAATAAGCTATATGTTTTTTGGTCAGAGCTTTGGATTTCTATTATATGCGACAGAATATGTGGCCAAGGATAATGCAGATGGACACATTTTATTTATACTAGAGGTACTAAATTATTGA

Coding sequence (CDS)

ATGGCTCATTGTGGAGCAAATTTTGAGTTTTATAATGGAGCAAATAGAGGTGATAATGTGTTGGGTTACAAGCCTGAGCTTACTTCTTATGATTATTCACGCTTGATATTTTCCAGGATGCACCATTTAAGGAATCTTGGTGACATTGACAATGCTAAATATGGAGGTGCGTTTGAATATGCCACTCCTGTCATGAATGAGCCAAGGTTGTTGAAATACTTGATTCTAATAAGCTATATGTTTTTTGGTCAGAGCTTTGGATTTCTATTATATGCGACAGAATATGTGGCCAAGGATAATGCAGATGGACACATTTTATTTATACTAGAGGTACTAAATTATTGA

Protein sequence

MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAKYGGAFEYATPVMNEPRLLKYLILISYMFFGQSFGFLLYATEYVAKDNADGHILFILEVLNY

Homology

[Close]

BLAST of Spg022045 vs. NCBI nr
Match: XP_011652351.1 (beta-galactosidase 17 [Cucumis sativus] >KGN59817.1 hypothetical protein Csa_001250 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-17
Identity = 65/145 (44.83%), Postives = 74/145 (51.03%), Query Frame = 0


Query: 1   MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAK------- 60
           MAH G NF FYNGAN G++VL YKP+LTSYDY   I       +  GD+DNAK       
Sbjct: 346 MAHGGTNFGFYNGANTGNDVLDYKPDLTSYDYDAPI-------KESGDVDNAKYEAIRRV 405

Query: 61  ---YGGAFEYATPVMNEP------RLLKYLIL------------------ISYMFFGQSF 112
              Y GA   + P  NE       +L K   L                  +S     QSF
Sbjct: 406 IQHYSGALIPSVPSNNEKIGYGPIQLQKVAFLFDLIHMMDPVDVAVSEEPLSMESMDQSF 465

[Close]

BLAST of Spg022045 vs. NCBI nr
Match: XP_038875608.1 (beta-galactosidase 17 [Benincasa hispida])

HSP 1 Score: 99.4 bits (246), Expect = 2.2e-17
Identity = 66/145 (45.52%), Postives = 73/145 (50.34%), Query Frame = 0


Query: 1   MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAK------- 60
           MAH G NF FYNGAN GD+VL YKP+LTSYDY   I       +  GDIDNAK       
Sbjct: 346 MAHGGTNFGFYNGANTGDDVLDYKPDLTSYDYDAPI-------KESGDIDNAKFEAIRRV 405

Query: 61  ---YGGAFEYATPVMNEP------RLLKYLIL------------------ISYMFFGQSF 112
              Y GA   + P  NE        L K   L                  +S     QSF
Sbjct: 406 IQHYSGALLPSVPSNNEKIGYGPIHLQKSAFLFDLIHMMNPVDVAVSEEPLSMEAMDQSF 465

[Close]

BLAST of Spg022045 vs. NCBI nr
Match: XP_008464017.1 (PREDICTED: beta-galactosidase 17 isoform X2 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-16
Identity = 64/145 (44.14%), Postives = 74/145 (51.03%), Query Frame = 0


Query: 1   MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAK------- 60
           MAH G NF FYNGAN G++VL YKP+LTSYDY   I       +  GD+DNAK       
Sbjct: 346 MAHGGTNFGFYNGANTGNDVLDYKPDLTSYDYDAPI-------KESGDVDNAKYEAIRRV 405

Query: 61  ---YGGAFEYATPVMNEP------RLLKYLIL------------------ISYMFFGQSF 112
              Y GA   + P  NE       +L K   L                  +S     +SF
Sbjct: 406 IQHYSGALIPSVPSNNEKIGYGPIQLQKVAFLFDLIHMMDPVDVAVSEEPLSMESTDRSF 465

[Close]

BLAST of Spg022045 vs. NCBI nr
Match: KAA0036665.1 (beta-galactosidase 17 isoform X2 [Cucumis melo var. makuwa] >TYK29905.1 beta-galactosidase 17 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-16
Identity = 64/145 (44.14%), Postives = 74/145 (51.03%), Query Frame = 0


Query: 1   MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAK------- 60
           MAH G NF FYNGAN G++VL YKP+LTSYDY   I       +  GD+DNAK       
Sbjct: 337 MAHGGTNFGFYNGANTGNDVLDYKPDLTSYDYDAPI-------KESGDVDNAKYEAIRRV 396

Query: 61  ---YGGAFEYATPVMNEP------RLLKYLIL------------------ISYMFFGQSF 112
              Y GA   + P  NE       +L K   L                  +S     +SF
Sbjct: 397 IQHYSGALIPSVPSNNEKIGYGPIQLQKVAFLFDLIHMMDPVDVAVSEEPLSMESTDRSF 456

[Close]

BLAST of Spg022045 vs. NCBI nr
Match: XP_022148250.1 (beta-galactosidase 17 isoform X2 [Momordica charantia])

HSP 1 Score: 94.7 bits (234), Expect = 5.3e-16
Identity = 64/145 (44.14%), Postives = 70/145 (48.28%), Query Frame = 0


Query: 1   MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAK------- 60
           MAH G NF FYNGAN G +VL YKP+LTSYDY   I       +  GDIDNAK       
Sbjct: 345 MAHGGTNFGFYNGANTGGDVLDYKPDLTSYDYDAPI-------KESGDIDNAKYKAIRRV 404

Query: 61  ---YGGAFEYATPVMNEP------RLLKYLILISYMFF------------------GQSF 112
              Y GA   + P   E        L K   L   +                     QSF
Sbjct: 405 IQHYSGALLPSVPSNIEKIGYGPIHLQKSAFLFDMIHMIDPLDVATSEEPLPMESVDQSF 464

[Close]

BLAST of Spg022045 vs. ExPASy Swiss-Prot
Match: Q0DGD7 (Beta-galactosidase 8 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0539400 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.6e-09
Identity = 45/136 (33.09%), Postives = 57/136 (41.91%), Query Frame = 0


Query: 1   MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAKYGGAFEY 60
           MAH G NF FYNGAN G N   YK +LTSYDY   I       R  GD+ NAKY      
Sbjct: 311 MAHGGTNFGFYNGANTGQNESDYKADLTSYDYDAPI-------REYGDVHNAKYKALRRV 370

Query: 61  -----ATPVMNEPRLLK---YLIL---------------------------ISYMFFGQS 102
                  P++  P  ++   Y ++                           +S    GQ 
Sbjct: 371 IHECTGIPLLQLPSKIERASYGLVEVQKVASLFDVIHNISDALKVAFSEQPLSMELMGQM 430

[Close]

BLAST of Spg022045 vs. ExPASy Swiss-Prot
Match: Q93Z24 (Beta-galactosidase 17 OS=Arabidopsis thaliana OX=3702 GN=BGAL17 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-08
Identity = 46/136 (33.82%), Postives = 57/136 (41.91%), Query Frame = 0


Query: 1   MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAK------- 60
           M H G NF FYNGAN G     YKP+LTSYDY   I       +  GDIDN K       
Sbjct: 340 MVHGGTNFGFYNGANTGSEESDYKPDLTSYDYDAPI-------KESGDIDNPKFQALQRV 399

Query: 61  --------------------YGG-AFEYATPV-----MNEPR-LLKYLILISYMFFGQSF 103
                               YG    +  T +     M +P  ++     IS    GQ F
Sbjct: 400 IKKYNASPHPISPSNKQRKAYGSIKMQMTTSLFDLVRMTDPADVITSANPISMESVGQMF 459

[Close]

BLAST of Spg022045 vs. ExPASy TrEMBL
Match: A0A0A0LGB2 (Beta-galactosidase OS=Cucumis sativus OX=3659 GN=Csa_3G848260 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 8.0e-18
Identity = 65/145 (44.83%), Postives = 74/145 (51.03%), Query Frame = 0


Query: 1   MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAK------- 60
           MAH G NF FYNGAN G++VL YKP+LTSYDY   I       +  GD+DNAK       
Sbjct: 346 MAHGGTNFGFYNGANTGNDVLDYKPDLTSYDYDAPI-------KESGDVDNAKYEAIRRV 405

Query: 61  ---YGGAFEYATPVMNEP------RLLKYLIL------------------ISYMFFGQSF 112
              Y GA   + P  NE       +L K   L                  +S     QSF
Sbjct: 406 IQHYSGALIPSVPSNNEKIGYGPIQLQKVAFLFDLIHMMDPVDVAVSEEPLSMESMDQSF 465

[Close]

BLAST of Spg022045 vs. ExPASy TrEMBL
Match: A0A5D3E3M2 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10771G00010 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.2e-17
Identity = 64/145 (44.14%), Postives = 74/145 (51.03%), Query Frame = 0


Query: 1   MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAK------- 60
           MAH G NF FYNGAN G++VL YKP+LTSYDY   I       +  GD+DNAK       
Sbjct: 337 MAHGGTNFGFYNGANTGNDVLDYKPDLTSYDYDAPI-------KESGDVDNAKYEAIRRV 396

Query: 61  ---YGGAFEYATPVMNEP------RLLKYLIL------------------ISYMFFGQSF 112
              Y GA   + P  NE       +L K   L                  +S     +SF
Sbjct: 397 IQHYSGALIPSVPSNNEKIGYGPIQLQKVAFLFDLIHMMDPVDVAVSEEPLSMESTDRSF 456

[Close]

BLAST of Spg022045 vs. ExPASy TrEMBL
Match: A0A1S3CKJ1 (Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103502003 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.2e-17
Identity = 64/145 (44.14%), Postives = 74/145 (51.03%), Query Frame = 0


Query: 1   MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAK------- 60
           MAH G NF FYNGAN G++VL YKP+LTSYDY   I       +  GD+DNAK       
Sbjct: 346 MAHGGTNFGFYNGANTGNDVLDYKPDLTSYDYDAPI-------KESGDVDNAKYEAIRRV 405

Query: 61  ---YGGAFEYATPVMNEP------RLLKYLIL------------------ISYMFFGQSF 112
              Y GA   + P  NE       +L K   L                  +S     +SF
Sbjct: 406 IQHYSGALIPSVPSNNEKIGYGPIQLQKVAFLFDLIHMMDPVDVAVSEEPLSMESTDRSF 465

[Close]

BLAST of Spg022045 vs. ExPASy TrEMBL
Match: A0A6J1HX51 (Beta-galactosidase OS=Cucurbita maxima OX=3661 GN=LOC111467663 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.6e-16
Identity = 63/145 (43.45%), Postives = 71/145 (48.97%), Query Frame = 0


Query: 1   MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAK------- 60
           MAH G NF FYNGAN GD+ L YKP+LTSYDY   I       +  GDIDNAK       
Sbjct: 346 MAHGGTNFGFYNGANTGDSALDYKPDLTSYDYDAPI-------KESGDIDNAKYDAIRRV 405

Query: 61  ---YGGAFEYATPVMNEPRLLKYLILISYMFF------------------------GQSF 112
              Y GA   + P   E      + L    FF                         QSF
Sbjct: 406 IQRYSGALLPSAPSNIEKIGYGPIYLQKSAFFFDLIHMIDSVDVFISEEPLSMESVDQSF 465

[Close]

BLAST of Spg022045 vs. ExPASy TrEMBL
Match: A0A6J1D2E3 (Beta-galactosidase OS=Momordica charantia OX=3673 GN=LOC111016956 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.6e-16
Identity = 64/145 (44.14%), Postives = 70/145 (48.28%), Query Frame = 0


Query: 1   MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAK------- 60
           MAH G NF FYNGAN G +VL YKP+LTSYDY   I       +  GDIDNAK       
Sbjct: 345 MAHGGTNFGFYNGANTGGDVLDYKPDLTSYDYDAPI-------KESGDIDNAKYKAIRRV 404

Query: 61  ---YGGAFEYATPVMNEP------RLLKYLILISYMFF------------------GQSF 112
              Y GA   + P   E        L K   L   +                     QSF
Sbjct: 405 IQHYSGALLPSVPSNIEKIGYGPIHLQKSAFLFDMIHMIDPLDVATSEEPLPMESVDQSF 464

[Close]

BLAST of Spg022045 vs. TAIR 10
Match: AT1G72990.1 (beta-galactosidase 17 )

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-09
Identity = 46/136 (33.82%), Postives = 57/136 (41.91%), Query Frame = 0


Query: 1   MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAK------- 60
           M H G NF FYNGAN G     YKP+LTSYDY   I       +  GDIDN K       
Sbjct: 340 MVHGGTNFGFYNGANTGSEESDYKPDLTSYDYDAPI-------KESGDIDNPKFQALQRV 399

Query: 61  --------------------YGG-AFEYATPV-----MNEPR-LLKYLILISYMFFGQSF 103
                               YG    +  T +     M +P  ++     IS    GQ F
Sbjct: 400 IKKYNASPHPISPSNKQRKAYGSIKMQMTTSLFDLVRMTDPADVITSANPISMESVGQMF 459

[Close]

BLAST of Spg022045 vs. TAIR 10
Match: AT1G72990.2 (beta-galactosidase 17 )

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-09
Identity = 46/136 (33.82%), Postives = 57/136 (41.91%), Query Frame = 0


Query: 1   MAHCGANFEFYNGANRGDNVLGYKPELTSYDYSRLIFSRMHHLRNLGDIDNAK------- 60
           M H G NF FYNGAN G     YKP+LTSYDY   I       +  GDIDN K       
Sbjct: 278 MVHGGTNFGFYNGANTGSEESDYKPDLTSYDYDAPI-------KESGDIDNPKFQALQRV 337

Query: 61  --------------------YGG-AFEYATPV-----MNEPR-LLKYLILISYMFFGQSF 103
                               YG    +  T +     M +P  ++     IS    GQ F
Sbjct: 338 IKKYNASPHPISPSNKQRKAYGSIKMQMTTSLFDLVRMTDPADVITSANPISMESVGQMF 397

The following BLAST results are available for this feature:

BLAST of Spg022045 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652351.1	1.7e-17	44.83	beta-galactosidase 17 [Cucumis sativus] >KGN59817.1 hypothetical protein Csa_001...	[more]
XP_038875608.1	2.2e-17	45.52	beta-galactosidase 17 [Benincasa hispida]	[more]
XP_008464017.1	1.1e-16	44.14	PREDICTED: beta-galactosidase 17 isoform X2 [Cucumis melo]	[more]
KAA0036665.1	1.1e-16	44.14	beta-galactosidase 17 isoform X2 [Cucumis melo var. makuwa] >TYK29905.1 beta-gal...	[more]
XP_022148250.1	5.3e-16	44.14	beta-galactosidase 17 isoform X2 [Momordica charantia]	[more]

BLAST of Spg022045 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0DGD7	6.6e-09	33.09	Beta-galactosidase 8 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0539400 PE...	[more]
Q93Z24	1.9e-08	33.82	Beta-galactosidase 17 OS=Arabidopsis thaliana OX=3702 GN=BGAL17 PE=2 SV=1	[more]

BLAST of Spg022045 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGB2	8.0e-18	44.83	Beta-galactosidase OS=Cucumis sativus OX=3659 GN=Csa_3G848260 PE=3 SV=1	[more]
A0A5D3E3M2	5.2e-17	44.14	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10771...	[more]
A0A1S3CKJ1	5.2e-17	44.14	Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103502003 PE=3 SV=1	[more]
A0A6J1HX51	2.6e-16	43.45	Beta-galactosidase OS=Cucurbita maxima OX=3661 GN=LOC111467663 PE=3 SV=1	[more]
A0A6J1D2E3	2.6e-16	44.14	Beta-galactosidase OS=Momordica charantia OX=3673 GN=LOC111016956 PE=3 SV=1	[more]

BLAST of Spg022045 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72990.1	1.4e-09	33.82	beta-galactosidase 17	[more]
AT1G72990.2	1.4e-09	33.82	beta-galactosidase 17	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.60.120.260		coord: 1..46 e-value: 1.5E-7 score: 33.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg022045.1	Spg022045.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0016787	hydrolase activity