Spg022001 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg022001
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold2: 3696962 .. 3700432 (+)
RNA-Seq Expression	Spg022001
Synteny	Spg022001

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGGGAAAAGAGAAAGGGCCTGCCGGACACCGGCGGCGGAATTTCTGAAAAGAAGACTAAACAGAACCACGACACGGCGCCGGAGGAGCCAACCGACGAGGAGGTGGAGGAGTTCTATGTCATACTGCGGCGGATGAAGCAAGCGGCCGAGTATTTTGGAGTGAAGAAGGGGATCATGACCAAGAATTTGAGAGCGGTGGTTGCAGCGGCGGCGGATCGGGAAGAGAAAGAGGAGGAGGAGACGGCAGCGCCGACGGCGGAGGTGAAGATCGATGAGGCCGCGCCGGCGGGGGTGAAACGGCGTGGGAAGGGGAAGGAAGTGGTGGAGGAAAATGGGTTGCGGTTGGATTTGAATATAGCGGTGGCGGTGGAGAGCGACGGCCGGTGATCGAGATTTTCCGATCAGATCGGAATGATCGCCGGCGACAAATTCCGACGTGGAACGAACAACAAACACGTGAGCTCATAAATACACGATGCTTTCAAGTTTTTTTTTTCCACTCTTATTTTGTCTTTTTGGGGATTGTAAAAATATAAATATATTATATATAATATGTTACTTTGTTTTCCAGATCTGACCCTCTGTGCCAAGCATTCAATTTTAGCCACACAAAAATATGATTTTGGTTATGAGTCTTTGACTTGGTCAGTTTGATTTTGATTTCATCTTGTTTTGAATTATTGCTCACTCATCTTAAATTTGCCTTCTTCTATTGTTTCTAAAAGAAATTAAATTGGAAAGCATCACCAAATCACACTAAACATATACTTTAACCATCTATCAAAATTGTATAATTTCAAAATGCATCGCTAAACGTACTAGAAAACGATCTATCAAGGTTCTTAAATTTCGAAATGTACCGATACAAGGGAGTTTCATTTGAATTAATTTAGAATATGATCGTTCATTAATAGTATAATGAAGTCGGAAAATAATTGCTACCTAATTTTCAATCCTTTTCAATTCTTTATTGTTGGCATTTATGTACTTCAAAGGGAAAACAAATGAATACATCAATCCTTTCATTTTGTAACATAGGACAAGAACAACTCATCAAGCGAGAAACAAATTGAAATTAGAAAAAGAGATATTGGCAATGAGGGTACGAATCTTCATGAATGAGGTTGAGTTCATAAATGTGTTTTTTTTTTCCAGCTAAATTAACATTATAATTTTATAGTTACAGTTGCTAATTTTTATTCAATCCAACTAACTCGAGTTAGTTAATATACTAAGATTATTTAATATATGAATTGAGCTTGTTTAGTCCCGTTTGATAACTAGTATTTGTTTTTTGTTTTTGAAAATTAAGCTAAAAAACACTACTTCCACCGATAAGTTTTTTGGTTTTGTTAGTTACCTTGTTCCAATATTTTCAAAAACCAAGTCAAATTTTGAAAATTAAAAAAAAAAATAGTTTTTAGAAACTTGTTCGTATTTTTGAAATTTAGTTAGAAATTCAAATATATCCTTAACAAAGATGAAAAACATGATAAGAAAATTGGGAGAAACCAAACTTAATTTTCAAAAACCAAATGGTTATCAAACGGGATCTTGATTAGTTTAATTCAATTATTTTAATTCTTAGGAAACCATTTATTAGTCCAAGAAAAAAAATAGTAGATATAGGATTAAATGAGTCATACTTCAAATAAAATTAAAGGAAAACTAGAATACAACTTAGTTTATGTGTATTCAACCTAATTGAATCAAGACCAGTATCAAACAATTTATTCATTTCTTCATATATATAATTTACATTTATTGATTGAACTTTCGAGTTCTAGAGCTTTGAAGTGAGAATTTATATCAATTAAAGAACTAAAAATTTAGGCCCCGTTTGATAATCATCTGGTTTTTTGTTTTTAAAAATTAAGCTTATACATACCCACTTCCACTTCATTCCTTGTTTGCCAACAAGTGCTTATCTCAACTGGCATAACTTTGTACTGATAACCACAAGGTCTGTGGTTCGAATCCCCCTCCCCACATATTATCAAAAAAAGAAAAAAAAAAAAATCTTCATTCCTTGTTTTCAAAAACAAAATCCAATTTTGAAAAAAAAAATAGTTTTCAAAAAGTAGTTTTTGTTTTTAGAATTTAGCTAGGAATTCAAATGGATCCTTAAAAAATGATGAAAGTCTGGTAGGAAATTTAGGAAAAAACAAGTATAATCTTCAAAAACCAAATGGTTATCAATCAGGATCTTAGTTTTTTGGTTCAATAATTACGAGGTGAGGATCGAACCATGAAACCTCAAAATAATTTTTGAGTTTTAAGAAAATAAAAAATAAATGAATGAATAAACAAAGAAGAGACGTGTAAAATTAGATGAGAAAATTTGAGAAATGGAAAAACATGGCATTGTCAGCCTCCAAACGGGCCCAAAACACCCAAATGCCAACAAGGCATGTGTGGGCTTAGGGCAATCAACCCTACTCACAAGTGAATTTATGAAATAATTTTGATATATTTCAACGAATTTACGAAATTATTTTTATTTTTATTTTTTTACTCGTCTTCTTATATTCTTCTCAAATTATTCTACAAATAATCAATGTATATCTCCATCTTAGATACAAGCTATGTATATAAAATTAATCCGTAAATGTTATGGTTTCTGTTGATGCCAAAATCTGGATAGAGGACTCACCTGACCTTCACGTGACACCAACAGTGAATTTGTAGAAGCTGGGGAAGACGTGACCTGCAAAACCAGCAAAAATCACTGCACACCGGTGTGGTGTAGGCCACACCGCCTCCGATGCCTAAGTCAGAAAACTGAAGAGACGCTAGAAAGTAAGGGGAGAAGTCGAGAATCAAGTTTCGGAACCCTTCTTCAGTGATGAAGAGGGGTTTAAATACCTGTTTTTACTCCTAGGGTTTTTAGGAATACGGAGGTGTTTCGGGACGAACCAGGTGAAACCGGGGCCATCCGGGGCATCAGGGACTGGAAGGAGGTGACTTAGCTCGGCCCACGCAAGCGGGCCGAATGGTCGGCCTCGACCTTTTGCCGAGGCCGACTATATGGGTCGGGCCAATATGGCCCGACCCTTTGGTCTGGTCTTCCTCTGGGTCGGTTTTCTGGTCCTATCTTTACCCGATTGTCCTCGTCAGCTCCTTGTGCGTTAGTGTGGTCCAAAATTACCTATAACAGTTTCAAACCATTTTTAATAGTAATAGATTAGTTAATAAGTTAAAGTGAGTACAACTTAGTGATAATTGTCATATATCTCAAACCGGGGTCAAAGGTTCGAATCCTCTACTTTTAACTGTAGATGAACTCTAAAAAATAAAAATTAGAATGATGTTAAATGATTCATTTTCATACTCTAATTGTTGATGGTCAAATTTCGCTCAGGAATTTACCTCTCGCTTCACGTGACGGTCAACAGTGAATTTGTAGATGAGCGGGAAAAACGTGACCTGCAAGACGAGCAAACGCTGCACACCGGTGTGGTGTAG

mRNA sequence

ATGGGAAGGGAAAAGAGAAAGGGCCTGCCGGACACCGGCGGCGGAATTTCTGAAAAGAAGACTAAACAGAACCACGACACGGCGCCGGAGGAGCCAACCGACGAGGAGGTGGAGGAGTTCTATGTCATACTGCGGCGGATGAAGCAAGCGGCCGAGTATTTTGGAGTGAAGAAGGGGATCATGACCAAGAATTTGAGAGCGGTGGTTGCAGCGGCGGCGGATCGGGAAGAGAAAGAGGAGGAGGAGACGGCAGCGCCGACGGCGGAGGTGAAGATCGATGAGGCCGCGCCGGCGGGGGTGAAACGGCGTGGGAAGGGGAAGGAAGTGGTGGAGGAAAATGGGTTGCGGTTGGATTTGAATATAGCGGTGGCGGTGGAGAGCGACGGCCGTGAATTTGTAGAAGCTGGGGAAGACGTGACCTGCAAAACCAGCAAAAATCACTGCACACCGGTGTGGTGTAGGCCACACCGCCTCCGATGCCTAAGTCAGAAAACTGAAGAGACGCTAGAAAGAATTTACCTCTCGCTTCACGTGACGGTCAACAGTGAATTTGTAGATGAGCGGGAAAAACGTGACCTGCAAGACGAGCAAACGCTGCACACCGGTGTGGTGTAG

Coding sequence (CDS)

ATGGGAAGGGAAAAGAGAAAGGGCCTGCCGGACACCGGCGGCGGAATTTCTGAAAAGAAGACTAAACAGAACCACGACACGGCGCCGGAGGAGCCAACCGACGAGGAGGTGGAGGAGTTCTATGTCATACTGCGGCGGATGAAGCAAGCGGCCGAGTATTTTGGAGTGAAGAAGGGGATCATGACCAAGAATTTGAGAGCGGTGGTTGCAGCGGCGGCGGATCGGGAAGAGAAAGAGGAGGAGGAGACGGCAGCGCCGACGGCGGAGGTGAAGATCGATGAGGCCGCGCCGGCGGGGGTGAAACGGCGTGGGAAGGGGAAGGAAGTGGTGGAGGAAAATGGGTTGCGGTTGGATTTGAATATAGCGGTGGCGGTGGAGAGCGACGGCCGTGAATTTGTAGAAGCTGGGGAAGACGTGACCTGCAAAACCAGCAAAAATCACTGCACACCGGTGTGGTGTAGGCCACACCGCCTCCGATGCCTAAGTCAGAAAACTGAAGAGACGCTAGAAAGAATTTACCTCTCGCTTCACGTGACGGTCAACAGTGAATTTGTAGATGAGCGGGAAAAACGTGACCTGCAAGACGAGCAAACGCTGCACACCGGTGTGGTGTAG

Protein sequence

MGREKRKGLPDTGGGISEKKTKQNHDTAPEEPTDEEVEEFYVILRRMKQAAEYFGVKKGIMTKNLRAVVAAAADREEKEEEETAAPTAEVKIDEAAPAGVKRRGKGKEVVEENGLRLDLNIAVAVESDGREFVEAGEDVTCKTSKNHCTPVWCRPHRLRCLSQKTEETLERIYLSLHVTVNSEFVDEREKRDLQDEQTLHTGVV

Homology

[Close]

BLAST of Spg022001 vs. NCBI nr
Match: KAG6589551.1 (hypothetical protein SDJN03_14974, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.1 bits (357), Expect = 5.2e-30
Identity = 87/132 (65.91%), Postives = 99/132 (75.00%), Query Frame = 0


Query: 1   MGREKRKGLPDTGGGISEKKTKQNHDT--APEEPTDEEVEEFYVILRRMKQAAEYFGVKK 60
           M R KRK   +  G   EKKTK +  T  A +EPTDEEVEEFY ILRRMK+AAEYFGV+K
Sbjct: 1   MVRGKRKCQSENDGKFCEKKTKNDETTAAAEKEPTDEEVEEFYSILRRMKRAAEYFGVEK 60

Query: 61  GIMTKNLRAVVAAAADREEKEEEETAAPTAEVKIDEAAPAGVKRRGKGKEVVEENGLRLD 120
           G++TK+LR V AAAADREEKEEE+     AE + D A    +K+ GKGKEVV ENGLRLD
Sbjct: 61  GMLTKSLRDVAAAAADREEKEEEKKGVKRAEAETDVAR---MKQGGKGKEVVAENGLRLD 120

Query: 121 LNIAVAVESDGR 131
           LNIAVAVESDGR
Sbjct: 121 LNIAVAVESDGR 129

[Close]

BLAST of Spg022001 vs. NCBI nr
Match: KAE8652459.1 (hypothetical protein Csa_013196 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 1.3e-28
Identity = 86/133 (64.66%), Postives = 102/133 (76.69%), Query Frame = 0


Query: 1   MGREKRKGLPDTGGGISEKKTKQNHDT---APEEPTDEEVEEFYVILRRMKQAAEYFGVK 60
           MG+EKRK   +    I EKKTK N DT   A EEPTDEEVEEFY+ILRRMKQ AEYFGV+
Sbjct: 1   MGKEKRKRQMENRAEIHEKKTK-NDDTPTPAAEEPTDEEVEEFYMILRRMKQMAEYFGVE 60

Query: 61  KGIMTKNLRAVVAAAADREEKEEEETAAPTAEVKIDEAAPAGVKRRGKGKEVVEENGLRL 120
           +G++ K+L AVVAAAAD++EK+EEE       + +   +PA V RRGKGKEVVEENGLRL
Sbjct: 61  RGMLAKSLSAVVAAAADQQEKKEEEEEEKKG-LSMAAPSPAEVSRRGKGKEVVEENGLRL 120

Query: 121 DLNIAVAV-ESDG 130
           DLNIA+AV +SDG
Sbjct: 121 DLNIALAVQQSDG 131

[Close]

BLAST of Spg022001 vs. NCBI nr
Match: KAA0058070.1 (hypothetical protein E6C27_scaffold274G003770 [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 2.7e-26
Identity = 84/134 (62.69%), Postives = 101/134 (75.37%), Query Frame = 0


Query: 1   MGREKRKGLPDTGGGISEKKTKQNHDT---APEEPTDEEVEEFYVILRRMKQAAEYFGVK 60
           MG+EKRK   ++   I EKKT+ +  T   A EEPTDEEVEEFY+ILRRMKQ AEYFGV+
Sbjct: 1   MGKEKRKRQLESRVPIHEKKTENDDSTASPAAEEPTDEEVEEFYMILRRMKQMAEYFGVE 60

Query: 61  KGIMTKNLRAVVAAAADREEKEEEETAAPTAEVKIDEAAPAGVKRRGKG-KEVVEENGLR 120
           +G++TK+L AVVAAAA+++EK+EEE    TA       APA   +RGK  KEVVEENGLR
Sbjct: 61  RGMLTKSLSAVVAAAANQQEKKEEEKGLSTA-----APAPAEANQRGKDQKEVVEENGLR 120

Query: 121 -LDLNIAVAVESDG 130
            LDLNIAVAV+SDG
Sbjct: 121 LLDLNIAVAVQSDG 129

[Close]

BLAST of Spg022001 vs. NCBI nr
Match: TYK28420.1 (hypothetical protein E5676_scaffold629G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 2.7e-26
Identity = 84/134 (62.69%), Postives = 101/134 (75.37%), Query Frame = 0


Query: 1   MGREKRKGLPDTGGGISEKKTKQNHDT---APEEPTDEEVEEFYVILRRMKQAAEYFGVK 60
           MG+EKRK   ++   I EKKT+ +  T   A EEPTDEEVEEFY+ILRRMKQ AEYFGV+
Sbjct: 1   MGKEKRKRQLESRVRIHEKKTENDDSTASPAAEEPTDEEVEEFYMILRRMKQMAEYFGVE 60

Query: 61  KGIMTKNLRAVVAAAADREEKEEEETAAPTAEVKIDEAAPAGVKRRGKG-KEVVEENGLR 120
           +G++TK+L AVVAAAA+++EK+EEE    TA       APA   +RGK  KEVVEENGLR
Sbjct: 61  RGMLTKSLSAVVAAAANQQEKKEEEKGLSTA-----APAPAEANQRGKDQKEVVEENGLR 120

Query: 121 -LDLNIAVAVESDG 130
            LDLNIAVAV+SDG
Sbjct: 121 LLDLNIAVAVQSDG 129

[Close]

BLAST of Spg022001 vs. ExPASy TrEMBL
Match: A0A5D3DYW7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00500 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.3e-26
Identity = 84/134 (62.69%), Postives = 101/134 (75.37%), Query Frame = 0


Query: 1   MGREKRKGLPDTGGGISEKKTKQNHDT---APEEPTDEEVEEFYVILRRMKQAAEYFGVK 60
           MG+EKRK   ++   I EKKT+ +  T   A EEPTDEEVEEFY+ILRRMKQ AEYFGV+
Sbjct: 1   MGKEKRKRQLESRVRIHEKKTENDDSTASPAAEEPTDEEVEEFYMILRRMKQMAEYFGVE 60

Query: 61  KGIMTKNLRAVVAAAADREEKEEEETAAPTAEVKIDEAAPAGVKRRGKG-KEVVEENGLR 120
           +G++TK+L AVVAAAA+++EK+EEE    TA       APA   +RGK  KEVVEENGLR
Sbjct: 61  RGMLTKSLSAVVAAAANQQEKKEEEKGLSTA-----APAPAEANQRGKDQKEVVEENGLR 120

Query: 121 -LDLNIAVAVESDG 130
            LDLNIAVAV+SDG
Sbjct: 121 LLDLNIAVAVQSDG 129

[Close]

BLAST of Spg022001 vs. ExPASy TrEMBL
Match: A0A5A7USD1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003770 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.3e-26
Identity = 84/134 (62.69%), Postives = 101/134 (75.37%), Query Frame = 0


Query: 1   MGREKRKGLPDTGGGISEKKTKQNHDT---APEEPTDEEVEEFYVILRRMKQAAEYFGVK 60
           MG+EKRK   ++   I EKKT+ +  T   A EEPTDEEVEEFY+ILRRMKQ AEYFGV+
Sbjct: 1   MGKEKRKRQLESRVPIHEKKTENDDSTASPAAEEPTDEEVEEFYMILRRMKQMAEYFGVE 60

Query: 61  KGIMTKNLRAVVAAAADREEKEEEETAAPTAEVKIDEAAPAGVKRRGKG-KEVVEENGLR 120
           +G++TK+L AVVAAAA+++EK+EEE    TA       APA   +RGK  KEVVEENGLR
Sbjct: 61  RGMLTKSLSAVVAAAANQQEKKEEEKGLSTA-----APAPAEANQRGKDQKEVVEENGLR 120

Query: 121 -LDLNIAVAVESDG 130
            LDLNIAVAV+SDG
Sbjct: 121 LLDLNIAVAVQSDG 129

The following BLAST results are available for this feature:

BLAST of Spg022001 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589551.1	5.2e-30	65.91	hypothetical protein SDJN03_14974, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8652459.1	1.3e-28	64.66	hypothetical protein Csa_013196 [Cucumis sativus]	[more]
KAA0058070.1	2.7e-26	62.69	hypothetical protein E6C27_scaffold274G003770 [Cucumis melo var. makuwa]	[more]
TYK28420.1	2.7e-26	62.69	hypothetical protein E5676_scaffold629G00500 [Cucumis melo var. makuwa]	[more]

BLAST of Spg022001 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg022001 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DYW7	1.3e-26	62.69	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7USD1	1.3e-26	62.69	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Spg022001 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
IPR034577	Protein NIM1-INTERACTING 2	PANTHER	PTHR35735	PROTEIN NIM1-INTERACTING 2	coord: 1..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg022001.1	Spg022001.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010112	regulation of systemic acquired resistance