Spg021963 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg021963
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RNase H domain-containing protein
Location	scaffold2: 12196904 .. 12201335 (+)
RNA-Seq Expression	Spg021963
Synteny	Spg021963

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAAGAAGCATAACACTATTCGGGGGCTAGAGGATGATTCTGGGACATGGATCCAGGAACCAGAGGGGATCATTAGGCAGATTACTGATTATTTTGACCACATTTTTGCCTCGAGGTGTCCGTCCCTAAGTGAGATCAGCAGTGCGATTGCCGGTGTGGGGGTGTCCGTTAGTGAGGAGATGAATTTGCAATTGCTCCGCCCTTTCCTCAAGGAGGAGGTATTTCTAGCTTTGAAGCAGATCCACCCTAATAAAGCTCCTGGTCCGGATGGTTTGTCAGGTGCGTTCTTCAGGCAGTCGTGGGATGTTGTGGAGGCAGATGTGGTAAGATGCTGCTTGAGTATTCTAAATGAGAAGGTTTCACCGAGACCGATCAACGAGACAATGATTGTGTTGATACCGAAGGTAAGGAATCCACGTCGTGTGACTGATTACCGCCCTATCTCCCTGTGTAATGTAATTTACAAACTGGTGTCGAAAGCCATGGTGAACCGGATGAAAGGGATCCTGAATGGGCTGATTTCTGAGAACCAGAGTGCGTTTATCCCGGGGCGATGTGTGGTGGACAACGCTATTCTGGGCTACGAGTGTATCCATGCACTGAAGGGCAAGTCTAGGGGCAGAGTTGGCTGGACATCTCTGAAGCTGGATATGAGCAAGACCTATGACCGGGTGGAATGGGTTTTCTTGGAGCAGATCGTGTTGAGAATGGGCTTTGCGCCAGCATGGGTGGAGTTGGTCCACCGGTGCATCTCCTCAGTGAGCTTTTCCTTCAATGTGAATGGAGTCAGATGTGGGGCAGTGACTCCATCTCGGGGCCTCAGGCAAGGGGACCCTCTTTCCCCCTACCTGTTTTTGTTATGCGCAGAAGGATTATCGAGTTTGCTTCATGGGGCGGAAGGCACGGGTGCTATTTCAGGTCTACGAATATCCCGGCAGGCTCCGCCTATTTCACATCTGTTTTTTGCAGATGACAGCCTGCTGTTTTTTAGGGCGGAGGTGGAGGAAGCTCGTATTATCTAGGACATACTCCGTTGCTATGAGCGGGCCTCAGGTCAGACGGTGAACTATGATAAATCTATTATCTCCTTTAGTCCTAACACGGAGGAGGGCGCGCAGGAGGAGGTGAGCCAGTTTCTCCGTGTGCAGAGGGCACCCTGTCACGCTCAGTATCTGGGGCTCCCGTCCTTTATGCCTCGTAGTAGGACGAGCACACTGAAATTCATTAAGGATCGAGTTTGGCAGCATATTCAGGGGTGGAAGGGGAAGTTGTTCTCTGTTGGAGGGAGGGAGGTCCTGCTGAAATCTGTGGTTCAGGCCATCCCTGTTATGCTATGAACTGCTGCCGGCTGCCGAAGAAACTGATCGCGGAAATAAACCGGATGATGGCGAGGTTTTGGTGTTGCGAGGTGGAGGAGGATAGGAAGATCCACTGGGTGAGCTGGAAAAGTCTGTGCAGGTCGAAGTGTGTGGGGGGGATGGGCTTTAGGGACATGGAAACTTTTAACCAGGCCCTACTGGCCAAACAGGACTAGAGGATAGTCAATCAGCCAACTTCTTACTTGGCCCGTGTCCTGAAAGGGCGGTACTTTCCGTCCTCGGAGTTCTTGGATGCGGTGGTAGGGAGTCGACCTTCCTTTATCTGGAGGAGCCTTATGTGGGGGAAGAAGCTGCTGGAAAAGGGGGTTCGTTGGAGGATTGGGAATGGAGAAAGGGTAAGGGTGTATGGATCCAGCTGGGTTCCATGTGATACGAACCTGAGGGTCGCTTCACCGATGACATTACAGCCTGATTCTAGAGTGAGGGACTTGTGTACGGCGTCAGGGCATTGGAATGAGATCCTTGTTCGGCAACACTTTAGCCCTCGAGAGGCAAGGTTACATTCTCTCTATTCCCCTACGCCAGGTTGCTTGTGAGGATGTCGTCATTTGGCACTTTGAGAAGTCGGGGCTATATTCAGTAAAGAGTGGGTATCGGGTTGGCCAAGGCCCTCTATTGGCCCAAAGCCCCTCATCTTCGTCTCTAGAGTTAATACATAAATGGTGGAATTATTGCTGGAATATGAGGATGCCAAGCAAGATTAAAGTATTTTTTTGGAGACTGTATTTAGGTCGGCTGCCCACGATGGATAATTTGTGCAGACGGGGGGTTGACTCACCGAACGTATGTGTGTGCTGTGGTAGGATTGGGGAGTCGAGTCTTCACCTGTTCTGGCATTGTAAGCAGATGAAGGAGATTATGTGGTCTGCAGGTTTTGGGGCTATTTTGTCCAAATGCAAGGCAGGCGACATTAAGTTCCTCCTCCGAGATGTAAAGGATGAGTTGAAATGGGATCGGTTTGAGGAATGGGTGGTGTTATTATGGGCGATCGGGTACAAGCGGAATGAAATGAGGCAGAAGAAGAAGGTCTCGATGGCAAATCTGGCAGATTGGGTGGTCGGGTATCTGAACGCGTTCCGTGATTCGGGGACGAGGGAGATGGATCTGTTGGGGGGAAGTCCTAGTCGGGCTGTCTGCAGGTGGGAGCCGCCAGGGGTTGATGGGTTCAAGGTGAATGTTGATGCGGCCTTCTGTCTGGAGAGCGGAGCAGCAGATGTAAGCGTGGTATGTCGAGATTCTTGGGGGCAGGTGGGTTTCACAGCTACGGCCTTCTACGAGAATATCAGAGATACTGACTTTGCAGAAGGTTTGGCAGCTGCTGTCGGCCTGAGACTTGCTGTGGAGACGGCTACTCGACCTTTTGTACTAGAGACTGATTCTATGCGGGTGTTCAAGCTGCTGCAGCGGGATAGGGAGGAGGTGTCGGAGTTGGGGATGTTGGTGGAGGATGCGATGAGAGGTGTTCTAGCGGGGTGGTTTATCGGCAGCAACTTTACGTTCAGGGAATGCAACTGCGTAGCCCATCTTTTGGCAAGGTTGGCGATGGAGGACAGATGTGACCGAGTGTGGATGGAAGAAGGCCCTTCATGTGTTTTGGGCTTGTTGGCTGAAAAGGGAGTGCATGAGTTTCCCCAAGTGAGGAGGGGAGGGTGATCAGTCTAAGCAGATCCAGCTGCCGCCCCAACCAGTATGCCTAATCTCAGGGAAGGTTTCCTGTTTCCCTTTCTCTATCCTTATGTTTTCGCATGTTTAGATTTTCTGGAGGGATGATATGGTTTAGGTTGGGGGTGGGAGGTGGTGTAGGCTAGTGGGCATTGGTTTAAGTCTGGTTGCACCTGAGCATCAGGCTAATTTATTGTTTTACTCTTGTTACGCTGCATCTGTTTTGCTCTGCTGGATTGGGTTGAGGCCATGCACCTGCGCATGGGACCTGCTGTCTCTCCTTTTGATTATCTATGGTCTTGTTGAGCATAAGTGGTTAGGGTCTTTGTTGAAGTTATCATGTTTGATGTCTGGTGTGCTCTCTGCTTTCTCTTATGCTTTTGTTGATAGTGAAGTATGATATCTTGTTTGGTGAGCCTCTTGAGTTTCTCTTGAGATCTCCGGCCTGTTTGAGTGTTTAAGGCCTCTTCCTTTGGTAGCTTTGAAGGCTCTTGTCTGTTTTATGAGCTCTATAGATCTGTTGTCACCCCGATAGGTGTAAGGCTGGGCGAGATGTCTAATTGTTGCAATCTAGCGTGTGTGCTTGACCTAGGTAAAAAGGAAAAGAAATGAAATCAAAAGAAAAGAGTAGATCTGAAAAGAAAAGAATGAATTGAAAAGAGAAAAGAAAGAAAAGAAAATGAGAAGAGAATGAGTTGTAAGACCTGCTAGAGCATGAGTGGTAAAACGAGGCGTGGGCATGCATTGGGACTCTTAAACATGTTCCTGTTCCGCAATAAAAGCAAGTTGAAAGCGTTAGGCAAAGAGGGGTAAAAATAGTTGCCTGCAGTGTGTTCAGTTAGGCCAACCAAGGGTAAACCCCGGGTTATGGGTCCCTACATTGTAGCGCGAAAGCTAGTACCCCGCCTTTAGAGTGGTAAAAGTAGTAAATGAGTTGTTTTCTCTTGCAGGCCCTAGGTTTTGAGATCACCCCTTTTTTGCGCCTTTTAGCTTCTTTGCGAGGCCTTAGTGCCAGTGTAGGGGGAAGATGGGTGGAGGAGGTTATAAGCCTTTCTTGGGCTTGTAGGGGCTGCTTTAGGTGAGGCTTTGCACTTGCATGCGCGTGAGGTTTCGTGGAGTAATCTTGTTTTGTTCCTGAACTTGTTAGCATGCTTTAGCTCTTCTCTTAGGCATAAGGTTTTGCACTCGGAGCTTGCAGACTTGATGTGATAAATTTCAGCTTCTGAATCCTTGCCATTTTATTAAATATTGCTCTAGGCTTGATTGGTTTTATCAGGGTGCAGGTTGGGGTGTCCAGGCAGGTTTTCTCTGGTGTGTGGAGGGAGTTATTGTGTGTTTTATTTCCTGTGCTAATGTGCTGTATTTGGTTGTGACCTCTCAAGCCTAG

mRNA sequence

ATGAGGAAGAAGCATAACACTATTCGGGGGCTAGAGGATGATTCTGGGACATGGATCCAGGAACCAGAGGGGATCATTAGGCAGATTACTGATTATTTTGACCACATTTTTGCCTCGAGGTGTCCGTCCCTAAGTGAGATCAGCAGTGCGATTGCCGGTGTGGGGGTGTCCTTCCTCCTCCGAGATGTAAAGGATGAGTTGAAATGGGATCGGTTTGAGGAATGGGTGGTGTTATTATGGGCGATCGGGTACAAGCGGAATGAAATGAGGCAGAAGAAGAAGGTCTCGATGGCAAATCTGGCAGATTGGGTGGTCGGGTATCTGAACGCGTTCCGTGATTCGGGGACGAGGGAGATGGATCTGTTGGGGGGAAGTCCTAGTCGGGCTGTCTGCAGGTGGGAGCCGCCAGGGGTTGATGGGTTCAAGGTGAATGTTGATGCGGCCTTCTGTCTGGAGAGCGGAGCAGCAGATGTAAGCGTGGTATGTCGAGATTCTTGGGGGCAGGTGGGTTTCACAGCTACGGCCTTCTACGAGAATATCAGAGATACTGACTTTGCAGAAGGTTTGGCAGCTGCTGTCGGCCTGAGACTTGCTGTGGAGACGGCTACTCGACCTTTTGTACTAGAGACTGATTCTATGCGGGTGTTCAAGCTGCTGCAGCGGGATAGGGAGGAGGTGTCGGAGTTGGGGATGTTGGTGGAGGATGCGATGAGAGGTGTTCTAGCGGGGTGGTTTATCGGCAGCAACTTTACGTTCAGGGAATGCAACTGCGTAGCCCATCTTTTGGCAAGGTTGGCGATGGAGGACAGATGTGACCGAGTGTGGATGGAAGAAGGCCCTTCATGTGTTTTGGGCTTGTTGGCTGAAAAGGGAGTGCATGAGTTTCCCCAAGTTGGGGGTGGGAGGTGGTGTAGGCTAGTGGGCATTGGTTTAAGTCTGGTTGCACCTGAGCATCAGGCTAATTTATTGTTTTACTCTTGTTACGCTGCATCTGTTTTGCTCTGCTGGATTGGGTTGAGGCCATGCACCTGCGCATGGGACCTGCTGTCTCTCCTTTTGATTATCTATGGTCTTGTTGAGCATAAGTGGTTAGGGTCTTTGTTGAAGTTATCATGTTTGATGTCTGGTGTGCTCTCTGCTTTCTCTTATGCTTTTGTTGATAGTGAAGCCCTAGGTTTTGAGATCACCCCTTTTTTGCGCCTTTTAGCTTCTTTGCGAGGCCTTAGTGCCAGGGCTGCTTTAGGTGAGGCTTTGCACTTGCATGCGCGTGAGGTTTCGTGGAGTAATCTTGTTTTGTTCCTGAACTTGTTAGCATGCTTTAGCTCTTCTCTTAGGCATAAGGGTGCAGGTTGGGGTGTCCAGGCAGGTTTTCTCTGGTGTGTGGAGGGAGTTATTGTGTGTTTTATTTCCTGTGCTAATGTGCTGTATTTGGTTGTGACCTCTCAAGCCTAG

Coding sequence (CDS)

ATGAGGAAGAAGCATAACACTATTCGGGGGCTAGAGGATGATTCTGGGACATGGATCCAGGAACCAGAGGGGATCATTAGGCAGATTACTGATTATTTTGACCACATTTTTGCCTCGAGGTGTCCGTCCCTAAGTGAGATCAGCAGTGCGATTGCCGGTGTGGGGGTGTCCTTCCTCCTCCGAGATGTAAAGGATGAGTTGAAATGGGATCGGTTTGAGGAATGGGTGGTGTTATTATGGGCGATCGGGTACAAGCGGAATGAAATGAGGCAGAAGAAGAAGGTCTCGATGGCAAATCTGGCAGATTGGGTGGTCGGGTATCTGAACGCGTTCCGTGATTCGGGGACGAGGGAGATGGATCTGTTGGGGGGAAGTCCTAGTCGGGCTGTCTGCAGGTGGGAGCCGCCAGGGGTTGATGGGTTCAAGGTGAATGTTGATGCGGCCTTCTGTCTGGAGAGCGGAGCAGCAGATGTAAGCGTGGTATGTCGAGATTCTTGGGGGCAGGTGGGTTTCACAGCTACGGCCTTCTACGAGAATATCAGAGATACTGACTTTGCAGAAGGTTTGGCAGCTGCTGTCGGCCTGAGACTTGCTGTGGAGACGGCTACTCGACCTTTTGTACTAGAGACTGATTCTATGCGGGTGTTCAAGCTGCTGCAGCGGGATAGGGAGGAGGTGTCGGAGTTGGGGATGTTGGTGGAGGATGCGATGAGAGGTGTTCTAGCGGGGTGGTTTATCGGCAGCAACTTTACGTTCAGGGAATGCAACTGCGTAGCCCATCTTTTGGCAAGGTTGGCGATGGAGGACAGATGTGACCGAGTGTGGATGGAAGAAGGCCCTTCATGTGTTTTGGGCTTGTTGGCTGAAAAGGGAGTGCATGAGTTTCCCCAAGTTGGGGGTGGGAGGTGGTGTAGGCTAGTGGGCATTGGTTTAAGTCTGGTTGCACCTGAGCATCAGGCTAATTTATTGTTTTACTCTTGTTACGCTGCATCTGTTTTGCTCTGCTGGATTGGGTTGAGGCCATGCACCTGCGCATGGGACCTGCTGTCTCTCCTTTTGATTATCTATGGTCTTGTTGAGCATAAGTGGTTAGGGTCTTTGTTGAAGTTATCATGTTTGATGTCTGGTGTGCTCTCTGCTTTCTCTTATGCTTTTGTTGATAGTGAAGCCCTAGGTTTTGAGATCACCCCTTTTTTGCGCCTTTTAGCTTCTTTGCGAGGCCTTAGTGCCAGGGCTGCTTTAGGTGAGGCTTTGCACTTGCATGCGCGTGAGGTTTCGTGGAGTAATCTTGTTTTGTTCCTGAACTTGTTAGCATGCTTTAGCTCTTCTCTTAGGCATAAGGGTGCAGGTTGGGGTGTCCAGGCAGGTTTTCTCTGGTGTGTGGAGGGAGTTATTGTGTGTTTTATTTCCTGTGCTAATGTGCTGTATTTGGTTGTGACCTCTCAAGCCTAG

Protein sequence

MRKKHNTIRGLEDDSGTWIQEPEGIIRQITDYFDHIFASRCPSLSEISSAIAGVGVSFLLRDVKDELKWDRFEEWVVLLWAIGYKRNEMRQKKKVSMANLADWVVGYLNAFRDSGTREMDLLGGSPSRAVCRWEPPGVDGFKVNVDAAFCLESGAADVSVVCRDSWGQVGFTATAFYENIRDTDFAEGLAAAVGLRLAVETATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAMRGVLAGWFIGSNFTFRECNCVAHLLARLAMEDRCDRVWMEEGPSCVLGLLAEKGVHEFPQVGGGRWCRLVGIGLSLVAPEHQANLLFYSCYAASVLLCWIGLRPCTCAWDLLSLLLIIYGLVEHKWLGSLLKLSCLMSGVLSAFSYAFVDSEALGFEITPFLRLLASLRGLSARAALGEALHLHAREVSWSNLVLFLNLLACFSSSLRHKGAGWGVQAGFLWCVEGVIVCFISCANVLYLVVTSQA

Homology

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BLAST of Spg021963 vs. NCBI nr
Match: XP_022135942.1 (uncharacterized protein LOC111007775 [Momordica charantia])

HSP 1 Score: 137.5 bits (345), Expect = 3.0e-28
Identity = 87/220 (39.55%), Postives = 118/220 (53.64%), Query Frame = 0


Query: 65  DELKWDRFEEWVVLLWAIGYKRNE--MRQKKKVSMANLADWVVGYLNAFRDS--GTREMD 124
           D +KW   EE  V LWAI   RN+          + N+ DWV  YL  ++ +  G     
Sbjct: 2   DRIKWTGLEELSVFLWAIWNARNQSMFTNGHGFLLVNMVDWVADYLQVYQSAQEGPSLPL 61

Query: 125 LLGGSPSRAVCRWEPPGVDGFKVNVDAAFCLESGAADVSVVCRDSWGQVGFTATAFYENI 184
           LL G   R V  W PP    FKVNVDAAF   + +A + ++ RDS   V  +A  F  ++
Sbjct: 62  LLDGRGGR-VSAWCPPLAPFFKVNVDAAFKKGNFSAGLDILIRDSTVNVLLSAMCFITHV 121

Query: 185 RDTDFAEGLAAAVGLRLAVETATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAMRGV 244
            D   AE LAA  G+ LA+E    PF +ETDS +VF LL+ D E+ SE+G+L   ++R +
Sbjct: 122 SDVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLA-SSIRHI 181

Query: 245 LAGWFIGSNFTF--RECNCVAHLLARLAMEDRCDRVWMEE 279
           ++   IG  F+F  RE N  AH LAR+ M      VW+EE
Sbjct: 182 VSSLHIGGGFSFVNREGNSGAHTLARMGMVSESFHVWVEE 219

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BLAST of Spg021963 vs. NCBI nr
Match: XP_022150944.1 (uncharacterized protein LOC111018973 [Momordica charantia])

HSP 1 Score: 132.9 bits (333), Expect = 7.5e-27
Identity = 86/240 (35.83%), Postives = 118/240 (49.17%), Query Frame = 0


Query: 53  GVGVSFLLRDVKDELKWDRFEEWVVLLWAIGYKRNEMRQKKKV--SMANLADWVVGYLNA 112
           G  +   +R   D + W      VVLLWAI   RN+  Q   +  S+++L  W   YL  
Sbjct: 22  GSDMGHFMRVWTDLVSWQHIGAIVVLLWAIWNARNQTPQHFSLGGSLSDLVSWSENYLQV 81

Query: 113 FRDSGTREMDLLGGSPSRAVCRWEPPGVDGFKVNVDAAFCLESGAADVSVVCRDSWGQVG 172
           ++ +       L       V  W PP     KVNVDAAF  ES  A V V+ RDS G V 
Sbjct: 82  YQAAQRSSXSALVVCRPPRVAIWRPPAAPLLKVNVDAAFRKESFVAGVGVIIRDSTGLVY 141

Query: 173 FTATAFYENIRDTDFAEGLAAAVGLRLAVETATRPFVLETDSMRVFKLLQRDREEVSELG 232
            TA        D D+ EG A   G+ LAVE     F +ETDS+R+F LL  D  + SE+G
Sbjct: 142 LTAIRLLARASDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTTDCVDDSEVG 201

Query: 233 MLVEDAMRGVLAGWF--IGSNFTFRECNCVAHLLARLAMEDRCDRVWMEEGPSCVLGLLA 289
           +L    ++  L+     +  +FT R  N  AHLLA+LA+     ++W+EE P  +  +LA
Sbjct: 202 VLC-SVIKLFLSSHAERVSFSFTHRNGNAXAHLLAQLALTSPHLQIWVEEWPDEISSVLA 260

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BLAST of Spg021963 vs. NCBI nr
Match: XP_022139684.1 (uncharacterized protein LOC111010533 [Momordica charantia])

HSP 1 Score: 129.0 bits (323), Expect = 1.1e-25
Identity = 77/227 (33.92%), Postives = 123/227 (54.19%), Query Frame = 0


Query: 59  LLRDVKDELKWDRFEEWVVLLWAIGYKRNE-MRQKKKVSMANLADWVVGYLNAFRDSGT- 118
           +LRD +D L W  FEE VV LW++  +RN  +  K++V   +LA WV  Y+  F+ + T 
Sbjct: 4   ILRDWRDMLNWKDFEELVVFLWSLWNRRNAFVFNKRRVEDDDLAGWVSTYIATFKATNTN 63

Query: 119 ------------REMDLLGGSPSRAVCRWEPPGVDGFKVNVDAAF-CLESGAADVSVVCR 178
                       ++   +  + +  +  W P     FK+  DA+F  ++  A    ++ R
Sbjct: 64  HATANQDVSQSFQQSSQIHQAQNHTI--WCPAEEGVFKLKTDASFSSIDFNAGLGVIIIR 123

Query: 179 DSWGQVGFTATAFYENIRDTDFAEGLAAAVGLRLAVETATRPFVLETDSMRVFKLLQRDR 238
           D  GQV  +AT + E++   D AE LAA  GLR+A+ET   P +LETDS+R++ L  RD+
Sbjct: 124 DHRGQVLASATKYLEHVASVDDAEALAAVEGLRVAMETGISPILLETDSLRIYNLFARDK 183

Query: 239 EEVSELGMLVEDAMRGVLAGWFIGSNFTFRECNCVAHLLARLAMEDR 271
           E +S+ G ++E     +     +  +FT R  N +AHLLAR A++ +
Sbjct: 184 EGLSKTGSIIEYVKTHLATRLQVSYSFTKRTGNTIAHLLARRALQSQ 228

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BLAST of Spg021963 vs. NCBI nr
Match: XP_022140628.1 (uncharacterized protein LOC111011237 [Momordica charantia])

HSP 1 Score: 113.6 bits (283), Expect = 4.7e-21
Identity = 64/181 (35.36%), Postives = 93/181 (51.38%), Query Frame = 0


Query: 100 LADWVVGYLNAFRDSGTREMDLLGGSPSRAVCRWEPPGVDGFKVNVDAAFCLESGAADVS 159
           L +W   Y+  FR++ +      G   + A   W PP    +K+N DA+F      A + 
Sbjct: 3   LVEWANKYVMEFREANSNPFP--GRVTNTAEVLWLPPDKRIYKINTDASFLASDQHAGLG 62

Query: 160 VVCRDSWGQVGFTATAFYENIRDTDFAEGLAAAVGLRLAVETATRPFVLETDSMRVFKLL 219
           ++ R+  GQV  +AT + ENI+  D AE + A  GL+LA +    P +LETDS R+F L 
Sbjct: 63  IIIRNDRGQVMASATKYLENIQSVDMAEAIVAVEGLQLASKIGVNPVILETDSSRIFNLF 122

Query: 220 QRDREEVSELGMLVEDAMRGVLAGWFIGSNFTFRECNCVAHLLARLAMEDRCDRVWMEEG 279
            +  E++SE G +V  A            NF  RE N  AH+LAR A+  R   +WME+ 
Sbjct: 123 SQPSEDLSETGEIVLKAKNFWTQSLHASFNFVKREGNKAAHMLARRALLLREFSIWMEDW 181

Query: 280 P 281
           P
Sbjct: 183 P 181

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BLAST of Spg021963 vs. NCBI nr
Match: TXG69190.1 (hypothetical protein EZV62_004125 [Acer yangbiense])

HSP 1 Score: 102.1 bits (253), Expect = 1.4e-17
Identity = 59/219 (26.94%), Postives = 104/219 (47.49%), Query Frame = 0


Query: 72  FEEWVVLLWAIGYKRNEM---RQKKKVSMANLADWVVGYLNAFRDSGTREMDLLGGSPSR 131
           FE   V+ W + Y+RN++   +  + V   ++ DW   ++  F+ + T  +D       R
Sbjct: 640 FEFLCVVWWRVWYRRNQLVYEKSSQTVHDFDVLDWAASFIQDFKAAKT--VDTGSVVKQR 699

Query: 132 AVCRWEPPGVDGFKVNVDAAFCLESGAADVSVVCRDSWGQVGFTATAFYENIRDTDFAEG 191
              +W+P     +K+N DA     +    + VV RD +G V  +    +  +      E 
Sbjct: 700 VAPKWKPSPSGSYKINTDATLDCRAKVTGIGVVIRDCYGHVMASLCQSFPGLLQPQTVEA 759

Query: 192 LAAAVGLRLAVETATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAMRGVLAGWFIGS 251
           +A   G RLA+E    P  +E+DS+ V  L+       +E+G+++ D +      +F   
Sbjct: 760 VAVLRGFRLALEAGLCPASIESDSLSVVNLINSMDILRAEIGVVLHDILAMGSNSFFSSV 819

Query: 252 NFTFRECNCVAHLLARLAMEDRCDRVWMEEGPSCVLGLL 288
           +F  R  NCVAH LA+L++    + VW+E+ P  V  L+
Sbjct: 820 SFVPRLTNCVAHSLAKLSLSFEGEHVWLEDCPLAVESLV 856

[Close]

BLAST of Spg021963 vs. ExPASy TrEMBL
Match: A0A6J1C467 (uncharacterized protein LOC111007775 OS=Momordica charantia OX=3673 GN=LOC111007775 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.5e-28
Identity = 87/220 (39.55%), Postives = 118/220 (53.64%), Query Frame = 0


Query: 65  DELKWDRFEEWVVLLWAIGYKRNE--MRQKKKVSMANLADWVVGYLNAFRDS--GTREMD 124
           D +KW   EE  V LWAI   RN+          + N+ DWV  YL  ++ +  G     
Sbjct: 2   DRIKWTGLEELSVFLWAIWNARNQSMFTNGHGFLLVNMVDWVADYLQVYQSAQEGPSLPL 61

Query: 125 LLGGSPSRAVCRWEPPGVDGFKVNVDAAFCLESGAADVSVVCRDSWGQVGFTATAFYENI 184
           LL G   R V  W PP    FKVNVDAAF   + +A + ++ RDS   V  +A  F  ++
Sbjct: 62  LLDGRGGR-VSAWCPPLAPFFKVNVDAAFKKGNFSAGLDILIRDSTVNVLLSAMCFITHV 121

Query: 185 RDTDFAEGLAAAVGLRLAVETATRPFVLETDSMRVFKLLQRDREEVSELGMLVEDAMRGV 244
            D   AE LAA  G+ LA+E    PF +ETDS +VF LL+ D E+ SE+G+L   ++R +
Sbjct: 122 SDVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLA-SSIRHI 181

Query: 245 LAGWFIGSNFTF--RECNCVAHLLARLAMEDRCDRVWMEE 279
           ++   IG  F+F  RE N  AH LAR+ M      VW+EE
Sbjct: 182 VSSLHIGGGFSFVNREGNSGAHTLARMGMVSESFHVWVEE 219

[Close]

BLAST of Spg021963 vs. ExPASy TrEMBL
Match: A0A6J1DBJ7 (uncharacterized protein LOC111018973 OS=Momordica charantia OX=3673 GN=LOC111018973 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.6e-27
Identity = 86/240 (35.83%), Postives = 118/240 (49.17%), Query Frame = 0


Query: 53  GVGVSFLLRDVKDELKWDRFEEWVVLLWAIGYKRNEMRQKKKV--SMANLADWVVGYLNA 112
           G  +   +R   D + W      VVLLWAI   RN+  Q   +  S+++L  W   YL  
Sbjct: 22  GSDMGHFMRVWTDLVSWQHIGAIVVLLWAIWNARNQTPQHFSLGGSLSDLVSWSENYLQV 81

Query: 113 FRDSGTREMDLLGGSPSRAVCRWEPPGVDGFKVNVDAAFCLESGAADVSVVCRDSWGQVG 172
           ++ +       L       V  W PP     KVNVDAAF  ES  A V V+ RDS G V 
Sbjct: 82  YQAAQRSSXSALVVCRPPRVAIWRPPAAPLLKVNVDAAFRKESFVAGVGVIIRDSTGLVY 141

Query: 173 FTATAFYENIRDTDFAEGLAAAVGLRLAVETATRPFVLETDSMRVFKLLQRDREEVSELG 232
            TA        D D+ EG A   G+ LAVE     F +ETDS+R+F LL  D  + SE+G
Sbjct: 142 LTAIRLLARASDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTTDCVDDSEVG 201

Query: 233 MLVEDAMRGVLAGWF--IGSNFTFRECNCVAHLLARLAMEDRCDRVWMEEGPSCVLGLLA 289
           +L    ++  L+     +  +FT R  N  AHLLA+LA+     ++W+EE P  +  +LA
Sbjct: 202 VLC-SVIKLFLSSHAERVSFSFTHRNGNAXAHLLAQLALTSPHLQIWVEEWPDEISSVLA 260

[Close]

BLAST of Spg021963 vs. ExPASy TrEMBL
Match: A0A6J1CDQ4 (uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010533 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 5.2e-26
Identity = 77/227 (33.92%), Postives = 123/227 (54.19%), Query Frame = 0


Query: 59  LLRDVKDELKWDRFEEWVVLLWAIGYKRNE-MRQKKKVSMANLADWVVGYLNAFRDSGT- 118
           +LRD +D L W  FEE VV LW++  +RN  +  K++V   +LA WV  Y+  F+ + T 
Sbjct: 4   ILRDWRDMLNWKDFEELVVFLWSLWNRRNAFVFNKRRVEDDDLAGWVSTYIATFKATNTN 63

Query: 119 ------------REMDLLGGSPSRAVCRWEPPGVDGFKVNVDAAF-CLESGAADVSVVCR 178
                       ++   +  + +  +  W P     FK+  DA+F  ++  A    ++ R
Sbjct: 64  HATANQDVSQSFQQSSQIHQAQNHTI--WCPAEEGVFKLKTDASFSSIDFNAGLGVIIIR 123

Query: 179 DSWGQVGFTATAFYENIRDTDFAEGLAAAVGLRLAVETATRPFVLETDSMRVFKLLQRDR 238
           D  GQV  +AT + E++   D AE LAA  GLR+A+ET   P +LETDS+R++ L  RD+
Sbjct: 124 DHRGQVLASATKYLEHVASVDDAEALAAVEGLRVAMETGISPILLETDSLRIYNLFARDK 183

Query: 239 EEVSELGMLVEDAMRGVLAGWFIGSNFTFRECNCVAHLLARLAMEDR 271
           E +S+ G ++E     +     +  +FT R  N +AHLLAR A++ +
Sbjct: 184 EGLSKTGSIIEYVKTHLATRLQVSYSFTKRTGNTIAHLLARRALQSQ 228

[Close]

BLAST of Spg021963 vs. ExPASy TrEMBL
Match: A0A803P3X4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.4e-23
Identity = 84/284 (29.58%), Postives = 132/284 (46.48%), Query Frame = 0


Query: 56   VSFLLRDVKDELKWDRFEEWVVLLWAIGYKRNEMRQ-KKKVSMANLADWVVGYLNAFRDS 115
            ++FL+R +   L  + FE ++VL W + Y RN +     K     + +W   +L+ FR+S
Sbjct: 1548 LAFLMR-ISTILSKEEFEFFLVLSWNLWYVRNSVNHGGHKPQACAILEWCSKFLSEFRES 1607

Query: 116  GTREMDLLGGSPSRAVCRWEPPGVDGFKVNVDAAFCLESGAADVSVVCRDSWGQV-GFTA 175
             T + D       R   RW PPG+D FK+NVDA    E+G A +S V RD  G V    A
Sbjct: 1608 NTPKRD----RQVREAARWTPPGIDAFKINVDAGVRTEAGVASISSVVRDHAGMVHSAAA 1667

Query: 176  TAFYENIRDTDFAEGLAAAVGLRLAVETATRPFVLETDSMRVFKLLQRDREEVSELGMLV 235
            T   +N+     AE  A A GL+  ++     F +E+D ++   L+QR  E   ++  +V
Sbjct: 1668 TVLLQNMTPL-HAELQAIARGLQAGIQCNLPAFNVESDCLQAVTLVQRKEEGCRDVDEIV 1727

Query: 236  EDAMRGVLAGWFI-GSNFTFRECNCVAHLLARLAMEDRCDRVWMEEGPSCVLGLLAEKGV 295
               +R +L    + G +F +RE N VAH+LA  A+ ++   +W+   P C    +     
Sbjct: 1728 AH-IRSLLQNVRVRGVSFVYREANKVAHILANEALLNKASALWIGVVPPCASQAVMNDSP 1787

Query: 296  HEFPQVGGGRWCRLVGIGLSLVAPEHQANLLFYSCYAASVLLCW 337
            +  P+                    H  N +FYS      LLC+
Sbjct: 1788 NPLPR------------------QHHHHNHVFYSNSPTQSLLCY 1806

[Close]

BLAST of Spg021963 vs. ExPASy TrEMBL
Match: A0A6J1CIF1 (uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011237 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.3e-21
Identity = 64/181 (35.36%), Postives = 93/181 (51.38%), Query Frame = 0


Query: 100 LADWVVGYLNAFRDSGTREMDLLGGSPSRAVCRWEPPGVDGFKVNVDAAFCLESGAADVS 159
           L +W   Y+  FR++ +      G   + A   W PP    +K+N DA+F      A + 
Sbjct: 3   LVEWANKYVMEFREANSNPFP--GRVTNTAEVLWLPPDKRIYKINTDASFLASDQHAGLG 62

Query: 160 VVCRDSWGQVGFTATAFYENIRDTDFAEGLAAAVGLRLAVETATRPFVLETDSMRVFKLL 219
           ++ R+  GQV  +AT + ENI+  D AE + A  GL+LA +    P +LETDS R+F L 
Sbjct: 63  IIIRNDRGQVMASATKYLENIQSVDMAEAIVAVEGLQLASKIGVNPVILETDSSRIFNLF 122

Query: 220 QRDREEVSELGMLVEDAMRGVLAGWFIGSNFTFRECNCVAHLLARLAMEDRCDRVWMEEG 279
            +  E++SE G +V  A            NF  RE N  AH+LAR A+  R   +WME+ 
Sbjct: 123 SQPSEDLSETGEIVLKAKNFWTQSLHASFNFVKREGNKAAHMLARRALLLREFSIWMEDW 181

Query: 280 P 281
           P
Sbjct: 183 P 181

The following BLAST results are available for this feature:

BLAST of Spg021963 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135942.1	3.0e-28	39.55	uncharacterized protein LOC111007775 [Momordica charantia]	[more]
XP_022150944.1	7.5e-27	35.83	uncharacterized protein LOC111018973 [Momordica charantia]	[more]
XP_022139684.1	1.1e-25	33.92	uncharacterized protein LOC111010533 [Momordica charantia]	[more]
XP_022140628.1	4.7e-21	35.36	uncharacterized protein LOC111011237 [Momordica charantia]	[more]
TXG69190.1	1.4e-17	26.94	hypothetical protein EZV62_004125 [Acer yangbiense]	[more]

BLAST of Spg021963 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg021963 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C467	1.5e-28	39.55	uncharacterized protein LOC111007775 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1DBJ7	3.6e-27	35.83	uncharacterized protein LOC111018973 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1CDQ4	5.2e-26	33.92	uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A803P3X4	5.4e-23	29.58	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A6J1CIF1	2.3e-21	35.36	uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]

BLAST of Spg021963 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 144..266 e-value: 1.3E-15 score: 57.3
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 140..270 e-value: 1.7E-5 score: 26.9
None	No IPR available	PANTHER	PTHR33033	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 130..282
None	No IPR available	PANTHER	PTHR33033:SF67	SUBFAMILY NOT NAMED	coord: 130..282
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 143..264 e-value: 2.51158E-9 score: 53.0868
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 141..268

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg021963.1	Spg021963.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity