Spg021640 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg021640
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribonuclease H-like superfamily protein
Location	scaffold2: 16224703 .. 16230714 (+)
RNA-Seq Expression	Spg021640
Synteny	Spg021640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATACTGCACCATAAAGTGGGTATACTGCACCATAAATTGGTGATGAGTTTGAGGCATGGGTATACTGCACCATAAAGTGGGTCATCCCGTGCTTAAGAGCTTATGACTGTAGGGCTGCTTTAAGTCTGAAAAACAAAAATTTAAACCCCTTGAAAATGTGTTTTGATATGTCTGATAATAGAGTTAAGCTGTGGCAAGTTCTTAGAATTGAGTTAAAATTGGTGATTATTTGTCCATGCCGGAAGAATTATTTTGCTGCAGCAGAGCTCGGTTTTGCAGAGTGCTCAGGTAAAGGTTAAAGGTAGTATTGGATTGTCTTGTTTGATTAAGCTATTCTTTGTCTAATGTTTTGAATTCTTGAAGGGAAGGTTGGTTAGTATTGCTCGGGACGCGCAATAGTTCAAGTTTGGGGTGTGATAACTGCCCAAAAGGTAGTTATTTAGGCCTCATTTCTATATTGATTTGTGTGTCTTTTGTGCTTAATAGGGTTGGTTTTAGATGTAAATTATATGTTTTAACCCATTTGGAAGAATGGAAGCTTTGGAAATCATTTTGTGCAGAATCTGTTGCTGGGCGACTTGAGGGAGCAAATTCTGTGCTGCAGCAAAACTGGGAGCAGAACTGCCACGTAACAGCTCGTTAGCCAACTTCATGAACCGACTTCTGTTGAATTATTTTCGGGATAAAGGAGCAAGGAGAGCCCTACACGTGTCCATGTTGACCTAATTCAAGCCTCCTACCACCTCTATAAAAGGAGATAGCTCCCAAGTCAAAGGCATTCCAACTTCCCTTGGAAGCCGAGTAGTATAGAGAGATTGGAGATTACCAAGAACACCATCATCCGCAAGCTGATTAAGGAGATTATTATTTTCTTTATTATCTTGTGTAAATGGACATGCCTACTCAGATTGTAATTTGTGTTTCCATGCTTATTATGAACTAAGTAGCTTTAGGCGTTGGTTAAGGAATATGTAGTTGTCGTGCTTAAACTCTAATAATATTTATTGATTATTGTATCTTGGTTAATTGTTGTGCTTGTTTCTATTTTATGCCCGCTTGGCCAGCCGGTGTGAATACCTCTCTCTAGTTTCAGGGATGATTTAGAGAGTGTGTGGCAATTATCCACACTACGATCATTGTGTATTGGTGAACGCCAGTGACTGAGCTAGGGGTAGCCAGTTGCCTAGTGTTTGATCGATCGCACTTCATTGGGGTTGAAACACATTCCAAAAGATCCGGAGTTCCGGGAGGAATCCGCTAATAATACTGCGAGAGTTTGCATGATCAATAATATTGCTAGAGCATCTTTTAAAACAATTACAAAACTTAACCAGCGCCTGTCTTTAATCTATCTGTCTATTTGTTTACTCGTTGTTCTGTCATTTATTTTGCTTCAGCATAATTCTTATAAAACCCAATCATTTTTATTACTTTGAAACCATTAAAAGAATTATACAAAATAGATAAAGTGGAAGCTAATTCAGGCCTCGGATTGATAATACTTATTACTTGCTGCGGACTGTGTATACTTGCACAGGAATTCTAGAGTCTTTTTACACCATATTTTTACTCACTCTAGGAGCCCAACAGGAATCTATAAATTACTCTAAGTCTGCTATTTTGTTTTCCCCTAAACTCAACAATAATAGAAGAAACTTCCTTAGCTCCATTCTAGGTGTTAATAATGTGGATGATTTGGGTAAATACCTAGGAGTTCCTTCTGTCTTTTCGAGGAAAAAGTCTAAAGATCTTAGCTATATTTTGGATAGGGTTTGGAAATCGGTACAAGGTTGGAAGAGTTCCTTTTTCTCTATAGCGGGTAAGGAAATCTTAATTAAAAGTATCGGTCAGGCTATTCCTTCCTATGCTATGAATGTTTTTAGGTTTCCCAAGAATGTGTGTGATGAAATTATTAGAAGTTTCTCTCGGTTTTGGTGGGGCTCTAACCAAAGTCAAAAGAAAATCCACTAGTTTAAATGGGAATCCTTGTGTCTTCCCAAAAGCCTTGGAGGTTTAAATTTTCGTGACATTGAAGGATTCAATCAGGCCCTTTTAGCTAAGCAGGTCTGGAGACTAGTTTCTAATCCCGAGTCGTTGGTTGCTAGGTTTATTAAGAGTATTTACTATCACAGCTCTGATATTTGGGAGGCAGAAGTGGGTAAATCCCCTTCCTATATTTGGAAGAGTCTCATTTGGGGAAGAGATCTTTTGAGAAAAGGTCTTAGGAAGAGGGTAGGGAATGGAAGAGATACTTTTATGTTTAAGGAACCGTGGCTCCCAAAGGAGTCTACATTTAAACCGATTTGCATAGACCCAGATTTTTTAGACAGTAAGGTTGCAGATTTTATAACTCCTTCTAGGGGATGGGATTTAGATTTAATAAGGAAGGCAGTGATTAGTTTCGATTGTGAGTCCATTCAAGCAGTTCCTATTAATAGAAATTTAAATGACAAATTAATATGGCACTACGATAGGACAGGCTCCTACACAGTAAAGAGTGGATATAAGCTTTTTATGAACCTTAAAATTGATGGAATTTCATCGAGTTTCAGCCCAATGAATAGAGTATGGAACAATTTATGGAAACTAAACATTCCTTCTAAAATTAAGCATTTTGTTTGGAAAGCCCTGAAGAATTCCCTTCCAAATAATTTTAATCTAGCTCAAAGAGGAATTAATATTTCACCTCTATGCCCTATGTGTAAAGCCCAAATTGAAAGCACTGATCATTGCCTTTTTCTGTGTTCTCGAGCTAAAAATATATGGAATCTAACCTGCAAACACGTTTTTTTGGAGGAAAATTTCTATGGAAGCTTCATTGATCGGTGGATTAAAATTGATGCTACCAGCTCAAAGGAGAATTTGGGAAAAGCAGCAGTGATTTGTTGGGCGCTATGGACTGATCGAAATAAAGCTACTCATGGGGAGAAAATTCATCCTATTCCTAATCGCTGCAAATGGATCGAAGAGTACCTGGCTTCGTTTTTGCATGCATCTGCATCTTCCCGTTCATCTAGTGGATCCACACTTAACCAGCAAAATCAAGCCCCGATCTTCGAGGACCGCTGGATCCCTCCTCCTGACGGTTACTGGAAGATCAATACAGATGCTGCGTGTTCTGAGATTCCTCATTCGACTGGCCTTGGCGTCATTTGCAGAAATAAAGATGGTGGTACCTTGGTGGCTGCATCGATTTTCTTGGATTATCGCTTGGAGGTGTTGTTGGCGGAGCTGAGTGCTATTCTGGAGGGCATGAGAATCGCCCTTAGTTTTGGTTGTGAGAATCTTATTGTGGAGTCAGACTGCCAGCTTGCTATTAACTTCATTCTTCGAAAATCATCTGCTTGGAATGATGTGGAAGCTACTATGTCGTCGATTTGGGATCTGATTCCTTCTTTTGTTGATATTTCATTTACGTTTATCCCTAGGAGGCTTAATAAGGAAGCTGACCTTTTAGCTAAGAATGCCAGATTTGTGAAGTGTTCTGAGACTTGGACTTCCAATTTTCCAAGTTTGGCTTTGTATTGGGCCTTGTGGGCCTTTTCTGTTGCCCTAGTGGCGTTAATAATAGTATTTTTCAAAAAAAAAAAAATCATTTGAAGTTGTAACCTACCCCATTGCAATATTATAAATAGAGGTGGCATTCCCCTGCATCTCTTGCGACCTGACCACATTATCATACCTGTCTTAAACTGCTTCTAAGAGTGAAGACTGTCCCCACAAACTAACATGGGGTCCTTTTAAGATACTTGTGTCCTCACTCACATGCTCCATAAGAAAATTCCCAAAGAAGTCACCCAACATAGAACTTAACTAAGCCAAGCATGCTTAACTTTGGAGTTCTTATGAATTGAGTCATCGTAAAAGGTGCACCTTATTGGTATAGGTAGTTACTATCAATTCTTTTAAGCTTATATTGACCATATTTTCATGTCCTCATGATCCCTATCATTCAAATATAGTCTTGGTTCATTGATGTACCCCTCCTCTACTTGAACGTCACATGCCCACCAACTTCCGCCTTGGTTCGTCCTCGAACCACATCTTATTGGGAGAGGTTCTACTCTGATACCATCTATAATGCCTAGGTTTTATTTAACTAACGTAGTAACATTACTAAACCCCTATTTCAAATACCAACTGAATGCTCCGAAAATACGATCATCAAAATTGAAGCCAAACAAGAACTCAAATTCCAAATTTCAACTTTAATTTAATGGAATTAATCGTACTTGAAAATGTGGGGCGTTATAGTTTTAATTTCATTTGCATCATTAGTGGCAAATGTCCTTTGTACGTCTCATATATACAGGGTGCACCTTTACTGTTGCTTAGAGATAAATGGTCGAATGTTCAGAAATTTACTGTATATGGAAAGTATGAGGTTCGTAGGCAAATTAAGGATGAACTAAGGAAATTTTTTTTAGGTGTTTAGAAATAGTAATTTTAGAAAGTTCATGACTTACAGATGAGTAAGTTTCCTAGTCAACTCCTATACCACTTGATTAGGAGCCAGTGTAATCGAGCAAAAGAGGATGAGTTATAGTTTAATTGAAAGGGTCATGTAGTCAAGTTTGGTCTTCTTGAATTTGAAAGTATCACAGGACTACATTGTGGAGATCTACCGTCTCTAGACATGTGAAAATTAAGTGGTAGATTTTTTAACTAGTATGTTGGTAAGAGACGTCCAATCAAGCGATCAGACATTAATAACCTATTCCACAATAGGGACAAAGTGAAAAAGAAAGACCAAATCAAATTGTCCAAACTTTACTTCCTCACAAACTTCCTTCTAGACGAGTAATTAGGAACATGAGTAGATTTAGATCATATTATGCTATTGGATGATGATAAGCAGTTTGATAACTACTTGTAGGGTCATATAACCTATACTACGACAATCGATTCAATCAAGAGAACAATCAAGAATCCAAAAGTCATAGTTGTAATTAATAATTGGTTTTCCATATACATTGCTCGTATGTGTATTTGAATGAATATCCCTGTTGTCAAGTGATAGCAATTTATTTGCTAGAAAAGTGGCATCGAGAATGTGGAAGGTGAATAACTGGACGGCAGACGGAGATCCAAAATGGAAGGAACTTGCTTTGAAGGTATTTGAGAATGAGGAGGTATGTACTATATCTAATAAATCTTATTATATATTTATTTAAAAAAGAATCTTATTATGTTACATATTTCTGTGCAATGAACCATGAGGAAGTTGAAAGGGGAAAACGTCCCATGGAGCCTCTCATTCTCATAGCAAAGATGAAGATATCAATGTAACGGTAAAAACTCCTACTCCCCAAAGTTGTCTTACTAGAGGATTTCCATAACATGGTTATGAACAATTTTGCCATCAAAATAGTAAATAGATTTAGTTGTCAAGATCGAACGTGAAAATTTTGAATAGGTTCTTTCAATGACGAATATGCAGTACTAGTTGATCTAATTCTTTCATGTCCTCAACAATTAGATCTCTTTTACTATTCAAGATAGCAAAATTGTTCATAATCATGTTCTAAAAATCTTCTAGCAACACAACTTGGGGAGTAGGAGTTTTTACCGTTACATTAACATTTTCATCTTTTTTATGAGAATGAGATGCCTCAAACTCAGTCACTTCCTCCACTAGACGTTTTCCCAGGTCAACTTCCCCCGACTCATTGCGCAAAATATAATTTTGTATTTTCATATTAATATTTGATACACAAGAAGTATATAATATAATAAGGTTTATTAGAAAGTACATACATCCTCATTCTCAAATACCTTCAAAGCAAGTTCTTTCCATTCTGGGTGTCCGTCTACTGCCCAGTTATTCATCTTCGACATTCCCGACACCACTTTTCTAGCAAAGAAATTGTCTTCAATTGACAACAGAGGTATGCATTATATTCAAATGTCCATACGAACAATGCATATGGAAAGTCAGCAATTACTACAACTGTGGCTTATGGATTCTTTATCGATCTCTTGATTGAATCGATTGTTGTAGTATAG

mRNA sequence

ATGGGTATACTGCACCATAAAGTGGGTATACTGCACCATAAATTGGTGATGAGTTTGAGGCATGGAGTTAAGCTGTGGCAAGTTCTTAGAATTGAGTTAAAATTGGTGATTATTTGTCCATGCCGGAAGAATTATTTTGCTGCAGCAGAGCTCGGTTTTGCAGAGTGCTCAGAATCTGTTGCTGGGCGACTTGAGGGAGCAAATTCTGTGCTGCAGCAAAACTGGGAGCAGAACTGCCACGTAACAGCTCGAATTCTAGACTCAAAGGAGAATTTGGGAAAAGCAGCAGTGATTTGTTGGGCGCTATGGACTGATCGAAATAAAGCTACTCATGGGGAGAAAATTCATCCTATTCCTAATCGCTGCAAATGGATCGAAGAGTACCTGGCTTCGTTTTTGCATGCATCTGCATCTTCCCGTTCATCTAGTGGATCCACACTTAACCAGCAAAATCAAGCCCCGATCTTCGAGGACCGCTGGATCCCTCCTCCTGACGGTTACTGGAAGATCAATACAGATGCTGCGTGTTCTGAGATTCCTCATTCGACTGGCCTTGGCGTCATTTGCAGAAATAAAGATGGTGGTACCTTGGTGGCTGCATCGATTTTCTTGGATTATCGCTTGGAGGTGTTGTTGGCGGAGCTGAGTGCTATTCTGGAGGGCATGAGAATCGCCCTTAGTTTTGGTTGTGAGAATCTTATTGTGGAGTCAGACTGCCAGCTTGCTATTAACTTCATTCTTCGAAAATCATCTGCTTGGAATGATGTGGAAGCTACTATGTCGTCGATTTGGGATCTGATTCCTTCTTTTGTTGATATTTCATTTACGTTTATCCCTAGGAGGCTTAATAAGGAAGCTGACCTTTTAGCTAAGAATGCCAGATTTGTGAAGTGTTCTGAGACTTGGACTTCCAATTTTCCAAGTTTGGCTTTGTATTGGGCCTTGTGGGCCTTTTCTGTTGCCCTAGGTGCACCTTTACTGTTGCTTAGAGATAAATGGTCGAATGTTCAGAAATTTACTGTATATGGAAAGTATGAGGTGAATAACTGGACGGCAGACGGAGATCCAAAATGGAAGGAACTTGCTTTGAAGGTATTTGAGAATGAGGAGAGGTATGCATTATATTCAAATGTCCATACGAACAATGCATATGGAAAGTCAGCAATTACTACAACTGTGGCTTATGGATTCTTTATCGATCTCTTGATTGAATCGATTGTTGTAGTATAG

Coding sequence (CDS)

ATGGGTATACTGCACCATAAAGTGGGTATACTGCACCATAAATTGGTGATGAGTTTGAGGCATGGAGTTAAGCTGTGGCAAGTTCTTAGAATTGAGTTAAAATTGGTGATTATTTGTCCATGCCGGAAGAATTATTTTGCTGCAGCAGAGCTCGGTTTTGCAGAGTGCTCAGAATCTGTTGCTGGGCGACTTGAGGGAGCAAATTCTGTGCTGCAGCAAAACTGGGAGCAGAACTGCCACGTAACAGCTCGAATTCTAGACTCAAAGGAGAATTTGGGAAAAGCAGCAGTGATTTGTTGGGCGCTATGGACTGATCGAAATAAAGCTACTCATGGGGAGAAAATTCATCCTATTCCTAATCGCTGCAAATGGATCGAAGAGTACCTGGCTTCGTTTTTGCATGCATCTGCATCTTCCCGTTCATCTAGTGGATCCACACTTAACCAGCAAAATCAAGCCCCGATCTTCGAGGACCGCTGGATCCCTCCTCCTGACGGTTACTGGAAGATCAATACAGATGCTGCGTGTTCTGAGATTCCTCATTCGACTGGCCTTGGCGTCATTTGCAGAAATAAAGATGGTGGTACCTTGGTGGCTGCATCGATTTTCTTGGATTATCGCTTGGAGGTGTTGTTGGCGGAGCTGAGTGCTATTCTGGAGGGCATGAGAATCGCCCTTAGTTTTGGTTGTGAGAATCTTATTGTGGAGTCAGACTGCCAGCTTGCTATTAACTTCATTCTTCGAAAATCATCTGCTTGGAATGATGTGGAAGCTACTATGTCGTCGATTTGGGATCTGATTCCTTCTTTTGTTGATATTTCATTTACGTTTATCCCTAGGAGGCTTAATAAGGAAGCTGACCTTTTAGCTAAGAATGCCAGATTTGTGAAGTGTTCTGAGACTTGGACTTCCAATTTTCCAAGTTTGGCTTTGTATTGGGCCTTGTGGGCCTTTTCTGTTGCCCTAGGTGCACCTTTACTGTTGCTTAGAGATAAATGGTCGAATGTTCAGAAATTTACTGTATATGGAAAGTATGAGGTGAATAACTGGACGGCAGACGGAGATCCAAAATGGAAGGAACTTGCTTTGAAGGTATTTGAGAATGAGGAGAGGTATGCATTATATTCAAATGTCCATACGAACAATGCATATGGAAAGTCAGCAATTACTACAACTGTGGCTTATGGATTCTTTATCGATCTCTTGATTGAATCGATTGTTGTAGTATAG

Protein sequence

MGILHHKVGILHHKLVMSLRHGVKLWQVLRIELKLVIICPCRKNYFAAAELGFAECSESVAGRLEGANSVLQQNWEQNCHVTARILDSKENLGKAAVICWALWTDRNKATHGEKIHPIPNRCKWIEEYLASFLHASASSRSSSGSTLNQQNQAPIFEDRWIPPPDGYWKINTDAACSEIPHSTGLGVICRNKDGGTLVAASIFLDYRLEVLLAELSAILEGMRIALSFGCENLIVESDCQLAINFILRKSSAWNDVEATMSSIWDLIPSFVDISFTFIPRRLNKEADLLAKNARFVKCSETWTSNFPSLALYWALWAFSVALGAPLLLLRDKWSNVQKFTVYGKYEVNNWTADGDPKWKELALKVFENEERYALYSNVHTNNAYGKSAITTTVAYGFFIDLLIESIVVV

Homology

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BLAST of Spg021640 vs. NCBI nr
Match: XP_022131661.1 (uncharacterized protein LOC111004786 [Momordica charantia])

HSP 1 Score: 118.2 bits (295), Expect = 1.6e-22
Identity = 64/152 (42.11%), Postives = 82/152 (53.95%), Query Frame = 0


Query: 95  AAVICWALWTDRNKATHGEKIHPIPNRCKWIEEYLASFLHASASSRSSSGSTLNQQNQAP 154
           AA   WA+W DRN   HG  +     RC WI  Y  ++  A  + R S      QQ+  P
Sbjct: 55  AAFTXWAIWCDRNSXAHGSSVSTPALRCNWISSYFQNYSQAQENKRISP-----QQSSVP 114

Query: 155 IFEDRWIPPPDGYWKINTDAACSEIPHSTGLGVICRNKDGGTLVAASIFLDYRLEVLLAE 214
               RW+PP D   K+N+DAAC     STGLG+I R+  G  LVA S+FL   L  L AE
Sbjct: 115 PPSCRWLPPRDSAMKVNSDAACRST--STGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAE 174

Query: 215 LSAILEGMRIALSFGCENLIVESDCQLAINFI 247
           +  ILE +++A S     L+VESDCQ AI  +
Sbjct: 175 IRGILEALKLAASRSYTRLVVESDCQEAIRLV 199

[Close]

BLAST of Spg021640 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 117.5 bits (293), Expect = 2.8e-22
Identity = 75/223 (33.63%), Postives = 110/223 (49.33%), Query Frame = 0


Query: 90   ENLGKAAVICWALWTDRNKATHGEKIHPIPNRCKWIEEYLASFLHASASSRSSSGSTLNQ 149
            ++L  AA+  W +W DRN   HG+++ P+  +C+W    L  FL + + ++ S+ S   Q
Sbjct: 1229 KDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEW----LTPFLDSHSQAQMSNYSPRTQ 1288

Query: 150  QNQAPIFEDRWIPPPDGYWKINTDAACSEIPHSTGLGVICRNKDGGTLVAASIFLDYRLE 209
             N  P+ +  W P      K+NTDAAC     ST  G I R+     + A SI + + L 
Sbjct: 1289 SNHRPVVQ-YWRPSSSVSLKLNTDAACRGA--STSFGCIIRDSSCSLVAATSIRVPFPLS 1348

Query: 210  VLLAELSAILEGMRIALSFGCENLIVESDCQLAINFILRKSSAWNDVEATMSSIWDLIPS 269
             LLAE+  ILEG++ A +    +L VESD  LAI  I  +     D +  +  I  L   
Sbjct: 1349 PLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCC 1408

Query: 270  FVDISFTFIPRRLNKEADLLAK-NARFVKCSETWTSNFPSLAL 312
            F  ISF+   R+ N+ A  LAK        +  W  NFP+  L
Sbjct: 1409 FAFISFSHSSRQCNRAAHGLAKWGITSPSATYAWLFNFPTWLL 1444

[Close]

BLAST of Spg021640 vs. NCBI nr
Match: XP_024033146.1 (uncharacterized protein LOC112095446 [Citrus clementina])

HSP 1 Score: 109.4 bits (272), Expect = 7.5e-20
Identity = 72/221 (32.58%), Postives = 103/221 (46.61%), Query Frame = 0


Query: 96  AVICWALWTDRNKAT-HGEKIHPIPNRCK---WIEEYLASFLHASASSRSSSGSTLNQQN 155
           AV+ W +W  RNK    G++++P+    K    +E Y         S RS   S      
Sbjct: 47  AVVWWEIWHARNKLIFEGKRVNPMSLIAKAQAAVEAYQRVHGKEQTSKRSEDVSK----- 106

Query: 156 QAPIFEDRWIPPPDGYWKINTDAACSEIPHSTGLGVICRNKDGGTLVAASIFLDYRLEVL 215
                +D+W PPP G++K+N DAA       TGLGV+ RN  G  +VAA     ++  V 
Sbjct: 107 -----QDQWFPPPVGFYKVNVDAAVHTEQQLTGLGVVIRNPQGQIIVAAVKSTKFQDNVT 166

Query: 216 LAELSAILEGMRIALSFGCENLIVESDCQLAINFILRKSSAWNDVEATMSSIWDLIPSFV 275
            AE  A+  G+ IAL      +I+E+DC    N    K+S+  ++  T+S I      F 
Sbjct: 167 AAEAEAVKWGLEIALEARLATVIIETDCIEVANLANSKTSSRKEIMWTISDIHSYKEKFQ 226

Query: 276 DISFTFIPRRLNKEADLLAKNARFVKCSETWTSNFPSLALY 313
            +S   +PR  N  A  LAK A     + TW  NFP   L+
Sbjct: 227 SLSIQHVPRCCNSCAHSLAKRALRSLETVTWKDNFPPDVLF 257

[Close]

BLAST of Spg021640 vs. NCBI nr
Match: KAF8665205.1 (hypothetical protein HU200_054101 [Digitaria exilis])

HSP 1 Score: 108.2 bits (269), Expect = 1.7e-19
Identity = 57/210 (27.14%), Postives = 103/210 (49.05%), Query Frame = 0


Query: 95  AAVIC--WALWTDRNKATHGEKIHPIPNRCKWIEEYLASFLHASASSRSSSGSTLNQQNQ 154
           A ++C  W LWT RNK  HGE   P+     W ++      H     +        +Q  
Sbjct: 46  AMIMCDMWTLWTSRNKRRHGENPWPLRQAVFWAQDTAMDLWHILHDEKQ------KKQTS 105

Query: 155 APIFEDRWIPPPDGYWKINTDAACSEIPHSTGLGVICRNKDGGTLVAASIFLDYRLEVLL 214
           API    W PPP G+ K NTDAA  +   +  +G + R++ G  + A++ ++ Y L  L 
Sbjct: 106 API--RHWQPPPQGWLKCNTDAAYDDESRTGAVGALLRDETGNYITASAHWMPYVLSALA 165

Query: 215 AELSAILEGMRIALSFGCENLIVESDCQLAINFILRKSSAWNDVEATMSSIWDLIPSFVD 274
           AE  A   G+++A++ G   +I+E+DC++ ++   ++    +++   +  + ++  S +D
Sbjct: 166 AEAQASRIGLQLAVAHGATRVILETDCKVLVDLWHKEGERRSEIGGILKQMEEVAHSLID 225

Query: 275 ISFTFIPRRLNKEADLLAKNARFVKCSETW 303
            +  F+PR  N  A   A+ A   +  + W
Sbjct: 226 FTLVFVPRSCNVSAHECARIAFSSRHLDEW 247

[Close]

BLAST of Spg021640 vs. NCBI nr
Match: XP_024046732.1 (uncharacterized protein LOC112101057 [Citrus clementina])

HSP 1 Score: 108.2 bits (269), Expect = 1.7e-19
Identity = 71/222 (31.98%), Postives = 103/222 (46.40%), Query Frame = 0


Query: 96  AVICWALWTDRNKAT-HGEKIHPIPNRCK---WIEEYLASFLHASASSRSSSGSTLNQQN 155
           AV+ W +W  RNK    G++++P+    K    +E Y         S RS   S      
Sbjct: 174 AVVWWEIWHARNKLIFEGKRVNPMSLIAKAQAAVEAYQRVHGKEQTSKRSEDVSK----- 233

Query: 156 QAPIFEDRWIPPPDGYWKINTDAACSEIPHSTGLGVICRNKDGGTLVAASIFLDYRLEVL 215
                +D+W PPP G++K+N DAA       TGLGV+ RN  G  +V A     ++  V 
Sbjct: 234 -----QDQWCPPPVGFYKVNVDAAVHTEQQLTGLGVVIRNPQGQVIVTAVKSTKFQDNVT 293

Query: 216 LAELSAILEGMRIALSFGCENLIVESDCQLAINFILRKSSAWNDVEATMSSIWDLIPSFV 275
            AE  A+  G+ IAL      +I+E+DC    N    K+S+  ++  T+S I      F 
Sbjct: 294 AAEAEAVKWGLEIALEARLAAVIIETDCIEVANLANSKTSSRKEIVWTISDIHSYKEKFQ 353

Query: 276 DISFTFIPRRLNKEADLLAKNARFVKCSETWTSNFPSLALYW 314
            +S   +PR  N  A  LAK A     + TW  NFP   L++
Sbjct: 354 SLSIQHVPRCCNSCAHSLAKRALRSSETVTWKDNFPPDVLFY 385

[Close]

BLAST of Spg021640 vs. ExPASy TrEMBL
Match: A0A6J1BQ49 (uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004786 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 7.8e-23
Identity = 64/152 (42.11%), Postives = 82/152 (53.95%), Query Frame = 0


Query: 95  AAVICWALWTDRNKATHGEKIHPIPNRCKWIEEYLASFLHASASSRSSSGSTLNQQNQAP 154
           AA   WA+W DRN   HG  +     RC WI  Y  ++  A  + R S      QQ+  P
Sbjct: 55  AAFTXWAIWCDRNSXAHGSSVSTPALRCNWISSYFQNYSQAQENKRISP-----QQSSVP 114

Query: 155 IFEDRWIPPPDGYWKINTDAACSEIPHSTGLGVICRNKDGGTLVAASIFLDYRLEVLLAE 214
               RW+PP D   K+N+DAAC     STGLG+I R+  G  LVA S+FL   L  L AE
Sbjct: 115 PPSCRWLPPRDSAMKVNSDAACRST--STGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAE 174

Query: 215 LSAILEGMRIALSFGCENLIVESDCQLAINFI 247
           +  ILE +++A S     L+VESDCQ AI  +
Sbjct: 175 IRGILEALKLAASRSYTRLVVESDCQEAIRLV 199

[Close]

BLAST of Spg021640 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-22
Identity = 75/223 (33.63%), Postives = 110/223 (49.33%), Query Frame = 0


Query: 90   ENLGKAAVICWALWTDRNKATHGEKIHPIPNRCKWIEEYLASFLHASASSRSSSGSTLNQ 149
            ++L  AA+  W +W DRN   HG+++ P+  +C+W    L  FL + + ++ S+ S   Q
Sbjct: 1229 KDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEW----LTPFLDSHSQAQMSNYSPRTQ 1288

Query: 150  QNQAPIFEDRWIPPPDGYWKINTDAACSEIPHSTGLGVICRNKDGGTLVAASIFLDYRLE 209
             N  P+ +  W P      K+NTDAAC     ST  G I R+     + A SI + + L 
Sbjct: 1289 SNHRPVVQ-YWRPSSSVSLKLNTDAACRGA--STSFGCIIRDSSCSLVAATSIRVPFPLS 1348

Query: 210  VLLAELSAILEGMRIALSFGCENLIVESDCQLAINFILRKSSAWNDVEATMSSIWDLIPS 269
             LLAE+  ILEG++ A +    +L VESD  LAI  I  +     D +  +  I  L   
Sbjct: 1349 PLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCC 1408

Query: 270  FVDISFTFIPRRLNKEADLLAK-NARFVKCSETWTSNFPSLAL 312
            F  ISF+   R+ N+ A  LAK        +  W  NFP+  L
Sbjct: 1409 FAFISFSHSSRQCNRAAHGLAKWGITSPSATYAWLFNFPTWLL 1444

[Close]

BLAST of Spg021640 vs. ExPASy TrEMBL
Match: A0A6P5RZ31 (uncharacterized protein LOC110751579 OS=Prunus avium OX=42229 GN=LOC110751579 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-19
Identity = 69/223 (30.94%), Postives = 101/223 (45.29%), Query Frame = 0


Query: 91  NLGKAAVICWALWTDRNKATHGEK------IHPIPNRCKWIEEYLASFLHASASSRSSSG 150
           NL    V+ W +W D+N   HG+K      ++ I +R   +E   A+ +H      SS+ 
Sbjct: 21  NLSSPTVLSWLIWLDQNARMHGQKGRHPDDLYAIAHRLS-VEFIFANSVHVRTHPPSST- 80

Query: 151 STLNQQNQAPIFEDRWIPPPDGYWKINTDAACSEIPHSTGLGVICRNKDGGTLVAASIFL 210
                          W PPP G  K+N D ACS      GLG + RN  G  + A S+ +
Sbjct: 81  --------------HWCPPPPGKLKLNVDGACSTSVWKRGLGAVVRNVHGDLMGAISVPI 140

Query: 211 DYRLEVLLAELSAILEGMRIALSFGCENLIVESDCQLAINFILRKSSAWNDVEATMSSIW 270
                  + EL AI EG++     G ++L+VE+D + AIN I+  + A+      ++ I 
Sbjct: 141 TGCFSAKVTELLAIREGLQFTWETGYDSLVVETDAKNAINDIISGTEAFGVAGGIINDIH 200

Query: 271 DLIPSFVDISFTFIPRRLNKEADLLAKNARFVKCSETWTSNFP 308
            L  +F  +SF F PR  N  AD LAK A      + W    P
Sbjct: 201 MLSRNFDSLSFVFSPRLCNTVADRLAKFALGSVSIDVWLEEGP 227

[Close]

BLAST of Spg021640 vs. ExPASy TrEMBL
Match: A0A7N2M749 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.9e-19
Identity = 68/224 (30.36%), Postives = 103/224 (45.98%), Query Frame = 0


Query: 89  KENLGKAAVICWALWTDRNKATHGEKIHP----IPNRCKWIEEYLASFLHASASSRSSSG 148
           +E L +   ICW +W +RN+  HG    P    + N  + ++++ A+ +   + SRS + 
Sbjct: 182 QEKLERWVAICWGIWKNRNEVPHGGAKRPGQVIVRNALRLVDDFQAA-IRVPSQSRSCTH 241

Query: 149 STLNQQNQAPIFEDRWIPPPDGYWKINTDAACSEIPHSTGLGVICRNKDGGTLVAASIFL 208
            T            RW PPP GY+K+N D A     + +G+GVI R+ DG  + A    L
Sbjct: 242 DT-----------TRWRPPPPGYFKVNVDGAIFAKSNHSGVGVIVRDGDGNVVAAMCRKL 301

Query: 209 DYRLEVLLAELSAILEGMRIALSFGCENLIVESDCQLAINFILRKSSAWNDVEATMSSIW 268
           D  L VL  E  A+  G+  A   G  +++ E D Q+ IN I     A + V   +  + 
Sbjct: 302 DLPLGVLETEAKALEMGVVFAEEVGLRDVVFEVDSQVLINAIHGTCEAVSSVLNIIQGVL 361

Query: 269 DLIPSFVDISFTFIPRRLNKEADLLAKNARFVKCSETWTSNFPS 309
               SF    F    R+ N  A LLA+ A+ V+    W    PS
Sbjct: 362 QKAQSFRTFDFLHTKRQGNAPAHLLAQQAQKVEGLAVWLEECPS 393

[Close]

BLAST of Spg021640 vs. ExPASy TrEMBL
Match: A0A7N2MHN1 (RNase H domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.6e-18
Identity = 70/231 (30.30%), Postives = 96/231 (41.56%), Query Frame = 0


Query: 79  CHVTARILDSKENLGKA--AVICWALWTDRNKATHGEKIHPIPNRCKWIEEYLASFLHAS 138
           C    R L   E+  K   AVI W+LW  RN    G + HP+   C      L  FL   
Sbjct: 20  CDFLDRFLQVGEDYRKELFAVITWSLWNRRNAIHFGWQAHPLSQICIVASSLLQEFL--- 79

Query: 139 ASSRSSSGSTLNQQNQAPIFEDRWIPPPDGYWKINTDAACSEIPHSTGLGVICRNKDGGT 198
                     +      PI + +W PP  G  KIN DAA     +S G+GVI R+  G  
Sbjct: 80  ---------AIQVIKPRPILQQQWRPPDCGTHKINFDAAVFGATNSVGIGVIVRDWRGEP 139

Query: 199 LVAASIFLDYRLEVLLAELSAILEGMRIALSFGCENLIVESDCQLAINFILRKSSAWNDV 258
           + A S+ +     V   E+ A    +      G   +  E D  + IN + + +      
Sbjct: 140 VGALSMAVSMANSVSDLEVVACRRAVNFEAELGLHGVTFEGDSAIVINVVSQGNVVLATY 199

Query: 259 EATMSSIWDLIPSFVDISFTFIPRRLNKEADLLAKNARFVKCSETWTSNFP 308
           E  M  I  L  SF+   FT++ R  N  AD LAK AR++   + WTS  P
Sbjct: 200 ENIMEDIRSLSSSFLSWFFTYVHRSGNVVADFLAKKARYLDGCQLWTSTMP 238

[Close]

BLAST of Spg021640 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-14
Identity = 54/196 (27.55%), Postives = 82/196 (41.84%), Query Frame = 0


Query: 98  ICWALWTDRNKATHGEKIHPIPNRCKWIEEYLASFLHASASSRSSSGSTLNQQNQAPIFE 157
           + W LW  RN+     K +  P   +   E    +         +SG  + +        
Sbjct: 80  LLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGPQVERN-----LS 139

Query: 158 DRWIPPPDGYWKINTDAACSEIPHSTGLGVICRNKDGGTLVAASIFLDYRLEVLLAELSA 217
            +W  PP  + K NTDA         G+G I RN+ GG L   +  L     VL AEL A
Sbjct: 140 VQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEA 199

Query: 218 ILEGMRIALSFGCENLIVESDCQLAINFILRKSSAWNDVEATMSSIWDLIPSFVDISFTF 277
           +   +     F  + +I ESD Q  +N +L     W  ++  +  I  L+  F ++ F F
Sbjct: 200 LRWAVLTMSRFNYKRIIFESDAQALVN-LLNSDDFWPTLQPALEDIQQLLHHFEEVKFEF 259

Query: 278 IPRRLNKEADLLAKNA 294
            PR  NK AD +A+ +
Sbjct: 260 TPRGGNKVADRIARES 269

[Close]

BLAST of Spg021640 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-13
Identity = 54/196 (27.55%), Postives = 86/196 (43.88%), Query Frame = 0


Query: 98  ICWALWTDRNKATHGEKIHPIPNRCKWIEEYLASFLHASASSRSSSGSTLNQQNQAPIFE 157
           + W LW +RN+     +        +  E+ L  +      + + S  T  Q N++    
Sbjct: 363 LLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEW---RIRTEAESCGTKPQVNRSSC-- 422

Query: 158 DRWIPPPDGYWKINTDAACSEIPHSTGLGVICRNKDGGTLVAASIFLDYRLEVLLAELSA 217
            RW PPP  + K NTDA  +      G+G + RN+ G      +  L     VL AEL A
Sbjct: 423 GRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEA 482

Query: 218 ILEGMRIALSFGCENLIVESDCQLAINFILRKSSAWNDVEATMSSIWDLIPSFVDISFTF 277
           +   +     F    +I ESD Q+ I  IL     W  ++ T+  +  L+  F ++ F F
Sbjct: 483 MRWAVLSLSRFQYNYVIFESDSQVLIE-ILNNDEIWPSLKPTIQDLQRLLSQFTEVKFVF 542

Query: 278 IPRRLNKEADLLAKNA 294
           IPR  N  A+ +A+ +
Sbjct: 543 IPREGNTLAERVARES 552

[Close]

BLAST of Spg021640 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 4.0e-11
Identity = 54/206 (26.21%), Postives = 84/206 (40.78%), Query Frame = 0


Query: 98  ICWALWTDRNKATHGEKIHPIPNRCKWIEEYLASFLHASASSRSSSGSTLNQQNQAPIFE 157
           + W +W   N               +        +L  + ++   +G+    +N  P   
Sbjct: 47  LMWRIWKSGNDLVFNHTRTKFQTTVEMALNDTKEWLDNTMTNEQQNGN----RNADPSRN 106

Query: 158 DRWIPPPDGYWKINTDAACSEIPHSTGLGVICRNKDGGTLVAASIFLDYRLEVLLAELSA 217
            +W PP     K N DA+  E    +GLG I RN  G  +         R+    AE S 
Sbjct: 107 TKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECST 166

Query: 218 ILEGMRIALSFGCENLIVESDCQLAINFILRKSSAWNDVEATMSSIWDLIPSFVDISFTF 277
           ++  ++ +  FG + +I E D Q     I  KSS    ++  + +I   IPSF  I F+F
Sbjct: 167 LIWAIQASYGFGHKKVIFEGDNQTITRMINTKSSN-PRLQHFLDTIQSWIPSFESIEFSF 226

Query: 278 IPRRLNKEADLLAKNARFVKCSETWT 304
             R  N  AD LAK A  +K +  W+
Sbjct: 227 KHREQNGCADFLAKQA--IKENTQWS 245

[Close]

BLAST of Spg021640 vs. TAIR 10
Match: AT4G09490.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 52.0 bits (123), Expect = 1.3e-06
Identity = 42/125 (33.60%), Postives = 61/125 (48.80%), Query Frame = 0


Query: 170 INTDAACSEIPHSTGLGVICRN-KDGGTLVAASIFLDYRLEVLLAELSAILEGMRIALSF 229
           I TDAA        G G + RN  +   L   S   + RL  L+AE  A+   ++ A S 
Sbjct: 33  IFTDAAWKHETKDVGFGWVIRNCPELTALHYQSAARNVRLP-LMAEAIALFLALQYAQSI 92

Query: 230 GCENLIVESDCQLAINFILRKSSAWNDVEATMSSIWDLIPSFVDISFTFIPRRLNKEADL 289
           G   L + SD Q  I  I  +S +  +    +  I +L   F D+SF+F+PR  N+ AD 
Sbjct: 93  GITKLSMASDSQQLITAITSESPS-TEFYGIIFDILNLSLGFADVSFSFVPRSENRVADE 152

Query: 290 LAKNA 294
           LAK++
Sbjct: 153 LAKSS 155

The following BLAST results are available for this feature:

BLAST of Spg021640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131661.1	1.6e-22	42.11	uncharacterized protein LOC111004786 [Momordica charantia]	[more]
XP_022158377.1	2.8e-22	33.63	uncharacterized protein LOC111024874 [Momordica charantia]	[more]
XP_024033146.1	7.5e-20	32.58	uncharacterized protein LOC112095446 [Citrus clementina]	[more]
KAF8665205.1	1.7e-19	27.14	hypothetical protein HU200_054101 [Digitaria exilis]	[more]
XP_024046732.1	1.7e-19	31.98	uncharacterized protein LOC112101057 [Citrus clementina]	[more]

BLAST of Spg021640 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg021640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BQ49	7.8e-23	42.11	uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]
A0A6J1DX30	1.3e-22	33.63	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6P5RZ31	1.8e-19	30.94	uncharacterized protein LOC110751579 OS=Prunus avium OX=42229 GN=LOC110751579 PE...	[more]
A0A7N2M749	6.9e-19	30.36	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A7N2MHN1	2.6e-18	30.30	RNase H domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of Spg021640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34320.1	1.3e-14	27.55	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT4G29090.1	1.9e-13	27.55	Ribonuclease H-like superfamily protein	[more]
AT5G65005.1	4.0e-11	26.21	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT4G09490.1	1.3e-06	33.60	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 171..293 e-value: 1.2E-24 score: 86.5
IPR002156	Ribonuclease H domain	PROSITE	PS50879	RNASE_H	coord: 196..295 score: 9.091407
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 168..297 e-value: 1.1E-20 score: 76.0
None	No IPR available	PANTHER	PTHR33033:SF67	SUBFAMILY NOT NAMED	coord: 157..303
None	No IPR available	PANTHER	PTHR33033	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 157..303
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 170..291 e-value: 7.29368E-24 score: 93.918
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 167..296

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg021640.1	Spg021640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity