Spg021631 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg021631
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionzf-RVT domain-containing protein
Locationscaffold2: 17078582 .. 17080024 (+)
RNA-Seq ExpressionSpg021631
SyntenySpg021631
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGAGGTCACGATCCAACCAGAGACAGAGGATTCTGATTTTTTGAAAGAGATAATTAGAACCACTTCAATGGGAACATGTTTGGAGGCTGAGGATGATCTTTCAACTGTGAATGTTGACAATGAATCCTTTACAACAAAGGACGCTGTTATTGAATCAGATTTTGATATGCATGCAAATATTTTGCATAACAATGAGCCTAAAGAAGGAAGAGATCGGTTTTGTGAACCCTTTGCTAAATTTTACGCTTAAGAAAAGATCATGCTCCTTTATATTCTCAAGATCCAACGGCCTCTCTACTAGATGGTGATATCATTGAAGAGGCTTGCACAAATTTAATGGTCCATTCAGTCAACTTAAAGCAAGATAATTTTTCGAAGGATTCATCACAAAACCTTGTTGTGGAGCACTGTAATATCGGGCCCAAAGGTACACATTTTGATAAGGTTTTATTGGCTTCTTCTAAAACAAACTCATCACATAACGACCACCCTTCTCCTTATATTGATGTTTCGGATTGTGAATCTGATGTTACTGTAAGTAGTATGGAACTTGATTTGCAACACCATAGCAACTTTTGTGAAGAAGATATAGTCGAGGATCCTATTCTTAATGACTTGAAAGCTCTCTTCCAGACTCCTATCAAGTCTAGCAGTTCAATTTTTAAGGTTTTAGAAGCAAAAAATCTCTCGGTGGCAGATGTTCTTTTTCAGTCAGGGAGCTCCCCTCGTATTCTTTCGAGTTTCGTCGTGCTTTGTCCGATAGGGAAGTGATGGATGTCACGACTCTTCTTTCTTTGATTGAGGAGTTTGAGTTCAGGTTAGGGAGTAGAGATTGTCGAGTCTGGAGTCCTAACCCCTCAGAGGGATTTTCTTGTAAATCATACTTTTGTTCGTTACTAAATCCTCTTCCCCATAACGAGTCCATCTTTTCTAAGCTTTGGAAGGTGAAAGTTCCGAGTAAGGTGAGGTTCTTTATCTGGCAAGTTCTCCATGGTAGAGTTAATATTTTTGATAGGCTTGTGAGAAGGAATTATCCTCTGTTTGGCCCGTTTTGTTGTATTCTGTGTCGGACGGCGGAGGAAGACTTGGATCGTATTTTATGGAGATGTGCTTTTGCTCGTTCAGTTTGGGAGATCTTCTTCACCTCTTTTGGGAGACAGCAGCTGGTCTTTTAGACGTGAGGGCGATGATCAAAGAGTTCCTTCTCCATCCGACTTACCGTGGCAAAGGAGGTTTTTTGTGGAAAGCTGGCATGTTGGCGCTTTTATGGAACTTGTGGGGGGAAAGAAACAATAGGATTTTTAGGGGGTTAGTTAGAAGTCCGGGAAAAGTGTGGTCCATCATTAGATACCATGTCTCCTTGTGGGCTTCGGTCACGAATCTTTTTTGTAATTATCCATTAGGCATCATTATGCTTGATTGGAGACCCTTCCTCTGA

mRNA sequence

ATGCCTGAGGTCACGATCCAACCAGAGACAGAGGATTCTGATTTTTTGAAAGAGATAATTAGAACCACTTCAATGGGAACATGTTTGGAGGCTGAGGATGATCTTTCAACTGTGAATGTTGACAATGAATCCTTTACAACAAAGGACGCTGTTATTGAATCAGATTTTGATATGCATGCAAATATTTTGCATAACAATGAGCCTAAAGAAGGAAGAGATCGGTTTTATGGTGATATCATTGAAGAGGCTTGCACAAATTTAATGGTCCATTCAGTCAACTTAAAGCAAGATAATTTTTCGAAGGATTCATCACAAAACCTTGTTGTGGAGCACTGTAATATCGGGCCCAAAGGTACACATTTTGATAAGGTTTTATTGGCTTCTTCTAAAACAAACTCATCACATAACGACCACCCTTCTCCTTATATTGATGTTTCGGATTGTGAATCTGATGTTACTGTAAGTAGTATGGAACTTGATTTGCAACACCATAGCAACTTTTGTGAAGAAGATATAGTCGAGGATCCTATTCTTAATGACTTGAAAGCTCTCTTCCAGACTCCTATCAAGTCTAGCAGTTCAATTTTTAAGGTTTTAGAAGCAAAAAATCTCTCGGTGGCAGATGTTCTTTTTCAGTCAGGGAGCTCCCCTCGTATTCTTTCGAGTTTCGTCGCTTGTGAGAAGGAATTATCCTCTGTTTGGCCCGTTTTGTTGTATTCTGTGTCGGACGGCGGAGGAAGACTTGGATCGTATTTTATGGAGATGTGCTTTTGCTCGTTCAGTTTGGGAGATCTTCTTCACCTCTTTTGGGAGACAGCAGCTGGTCTTTTAGACGTGAGGGCGATGATCAAAGAGTTCCTTCTCCATCCGACTTACCGTGGCAAAGGAGGTTTTTTGTGGAAAGCTGGCATGTTGGCGCTTTTATGGAACTTGTGGGGGGAAAGAAACAATAGGATTTTTAGGGGGTTAGTTAGAAGTCCGGGAAAAGTGTGGTCCATCATTAGATACCATGTCTCCTTGTGGGCTTCGGTCACGAATCTTTTTTGTAATTATCCATTAGGCATCATTATGCTTGATTGGAGACCCTTCCTCTGA

Coding sequence (CDS)

ATGCCTGAGGTCACGATCCAACCAGAGACAGAGGATTCTGATTTTTTGAAAGAGATAATTAGAACCACTTCAATGGGAACATGTTTGGAGGCTGAGGATGATCTTTCAACTGTGAATGTTGACAATGAATCCTTTACAACAAAGGACGCTGTTATTGAATCAGATTTTGATATGCATGCAAATATTTTGCATAACAATGAGCCTAAAGAAGGAAGAGATCGGTTTTATGGTGATATCATTGAAGAGGCTTGCACAAATTTAATGGTCCATTCAGTCAACTTAAAGCAAGATAATTTTTCGAAGGATTCATCACAAAACCTTGTTGTGGAGCACTGTAATATCGGGCCCAAAGGTACACATTTTGATAAGGTTTTATTGGCTTCTTCTAAAACAAACTCATCACATAACGACCACCCTTCTCCTTATATTGATGTTTCGGATTGTGAATCTGATGTTACTGTAAGTAGTATGGAACTTGATTTGCAACACCATAGCAACTTTTGTGAAGAAGATATAGTCGAGGATCCTATTCTTAATGACTTGAAAGCTCTCTTCCAGACTCCTATCAAGTCTAGCAGTTCAATTTTTAAGGTTTTAGAAGCAAAAAATCTCTCGGTGGCAGATGTTCTTTTTCAGTCAGGGAGCTCCCCTCGTATTCTTTCGAGTTTCGTCGCTTGTGAGAAGGAATTATCCTCTGTTTGGCCCGTTTTGTTGTATTCTGTGTCGGACGGCGGAGGAAGACTTGGATCGTATTTTATGGAGATGTGCTTTTGCTCGTTCAGTTTGGGAGATCTTCTTCACCTCTTTTGGGAGACAGCAGCTGGTCTTTTAGACGTGAGGGCGATGATCAAAGAGTTCCTTCTCCATCCGACTTACCGTGGCAAAGGAGGTTTTTTGTGGAAAGCTGGCATGTTGGCGCTTTTATGGAACTTGTGGGGGGAAAGAAACAATAGGATTTTTAGGGGGTTAGTTAGAAGTCCGGGAAAAGTGTGGTCCATCATTAGATACCATGTCTCCTTGTGGGCTTCGGTCACGAATCTTTTTTGTAATTATCCATTAGGCATCATTATGCTTGATTGGAGACCCTTCCTCTGA

Protein sequence

MPEVTIQPETEDSDFLKEIIRTTSMGTCLEAEDDLSTVNVDNESFTTKDAVIESDFDMHANILHNNEPKEGRDRFYGDIIEEACTNLMVHSVNLKQDNFSKDSSQNLVVEHCNIGPKGTHFDKVLLASSKTNSSHNDHPSPYIDVSDCESDVTVSSMELDLQHHSNFCEEDIVEDPILNDLKALFQTPIKSSSSIFKVLEAKNLSVADVLFQSGSSPRILSSFVACEKELSSVWPVLLYSVSDGGGRLGSYFMEMCFCSFSLGDLLHLFWETAAGLLDVRAMIKEFLLHPTYRGKGGFLWKAGMLALLWNLWGERNNRIFRGLVRSPGKVWSIIRYHVSLWASVTNLFCNYPLGIIMLDWRPFL
Homology
[Close]
BLAST of Spg021631 vs. NCBI nr
Match: TYK19563.1 (uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 4.6e-21
Identity = 54/106 (50.94%), Postives = 72/106 (67.92%), Query Frame = 0 

Query: 258 CSFSLGDLLHLFWETAAGLLDVRAMIKEFLLHPTYRGKGGFLWKAGMLALLWNLWGERNN 317
           CSF  G     F  + AG  DVRAM + F+LHP ++ KG FLW A + A++W++WGERN+
Sbjct: 290 CSFREG-RRDEFDVSIAGQRDVRAMTEGFILHPPFKEKGRFLWLAEVCAIMWDIWGERND 349

Query: 318 RIFRGLVRSPGKVWSIIRYHVSLWASVTNLFCNYPLGIIMLDWRPF 364
           R+FRG  R   ++ S++R+HVSLW SV+ LFCNY LG I L   PF
Sbjct: 350 RVFRGKDRDLSEIGSLVRFHVSLWTSVSKLFCNYSLGNINLSLIPF 394

[Close]
BLAST of Spg021631 vs. NCBI nr
Match: XP_016900613.1 (PREDICTED: uncharacterized protein LOC107990976 [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 1.9e-19
Identity = 56/142 (39.44%), Postives = 76/142 (53.52%), Query Frame = 0 

Query: 223 FVACEKELSSVWPVLLYSVSDGGGRLGSYFMEMCFCSFSLGDLLHLFWETAAGLLDVRAM 282
           ++ C       W  LL+SV +    L          S      L  F    A   DVR M
Sbjct: 34  WIGCPDFAFVSWSFLLHSVLED---LDHLLGHSALASGIWDAFLQTFGLLYARHRDVRGM 93

Query: 283 IKEFLLHPTYRGKGGFLWKAGMLALLWNLWGERNNRIFRGLVRSPGKVWSIIRYHVSLWA 342
           I+EFLL+     +G FLW+A + A+LW LW E N R+F G+ R  G++W +IRYHVSLW 
Sbjct: 94  IEEFLLNLPCGERGRFLWRACVCAILWVLWDETNRRVFWGVERGTGEIWLVIRYHVSLWD 153

Query: 343 SVTNLFCNYPLGIIMLDWRPFL 365
           S++  FCNYPL +I+  W  F+
Sbjct: 154 SISKTFCNYPLDMILYSWATFV 172

[Close]
BLAST of Spg021631 vs. NCBI nr
Match: TYK23653.1 (SIL1 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 7.4e-11
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 0 

Query: 275 GLLDVRAMIKEFLLHPTYRGKGGFLWKAGMLALLWNLWGERNNRIFRGLVRSPGKVWSII 334
           G  +V  +I EFLL    R KG FLW  G+ A++WNLWGERNNR+FRG+ R P +VWS++
Sbjct: 26  GQREVHLVIGEFLLRLPLREKGCFLWCVGVCAVIWNLWGERNNRVFRGVEREPCEVWSLV 85

Query: 335 R 336
           R
Sbjct: 86  R 86

[Close]
BLAST of Spg021631 vs. NCBI nr
Match: RVW55720.1 (hypothetical protein CK203_085247 [Vitis vinifera])

HSP 1 Score: 78.2 bits (191), Expect = 1.7e-10
Identity = 48/138 (34.78%), Postives = 68/138 (49.28%), Query Frame = 0 

Query: 228 KELSSVWPVLLYSVSDGGGRLGSYFMEMCFCSFSLGDLLHLFWETAAGLLDVRAMIKEFL 287
           K LS  W +L       G  +   F+    C  ++G    LF     GL+ V     E +
Sbjct: 182 KVLSPQWCIL---CKGNGESIDHLFLH---CPITIGLWHRLF--NLVGLVWVPPRSLEDM 241

Query: 288 LHPTYRG-----KGGFLWKAGMLALLWNLWGERNNRIFRGLVRSPGKVWSIIRYHVSLWA 347
           L  T++G     +G  LW+   L L+W +W ERNNRIF    R+   VW +IR++ SLWA
Sbjct: 242 LVITFKGLGNSLRGKTLWQIACLTLIWMVWQERNNRIFEDKGRTEEMVWDLIRFYSSLWA 301

Query: 348 SVTNLFCNYPLGIIMLDW 361
           S T  F   PL ++ L+W
Sbjct: 302 SCTEAFRGVPLSVLQLNW 311

[Close]
BLAST of Spg021631 vs. NCBI nr
Match: RVW35460.1 (hypothetical protein CK203_097215 [Vitis vinifera])

HSP 1 Score: 77.8 bits (190), Expect = 2.2e-10
Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 0 

Query: 258 CSFSLGDLLHLFWETAAGLLDVRAMIKEFLLHPTYRG-----KGGFLWKAGMLALLWNLW 317
           C  ++G    LF    AGL+ V     E +L  T++G     +G  LWK   L L+W +W
Sbjct: 204 CPITIGLWHKLF--NLAGLVWVPPKSFEDMLVITFKGLGNSLRGKTLWKIACLTLIWMVW 263

Query: 318 GERNNRIFRGLVRSPGKVWSIIRYHVSLWASVTNLFCNYPLGIIMLDW 361
            ERNNRIF    R+   +W +IR++ SLWAS T  F   PL ++ L+W
Sbjct: 264 QERNNRIFEDKGRTEEMLWDLIRFYSSLWASCTEAFRGVPLSVLQLNW 309

[Close]
BLAST of Spg021631 vs. ExPASy TrEMBL
Match: A0A5D3D7T2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00660 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.2e-21
Identity = 54/106 (50.94%), Postives = 72/106 (67.92%), Query Frame = 0 

Query: 258 CSFSLGDLLHLFWETAAGLLDVRAMIKEFLLHPTYRGKGGFLWKAGMLALLWNLWGERNN 317
           CSF  G     F  + AG  DVRAM + F+LHP ++ KG FLW A + A++W++WGERN+
Sbjct: 290 CSFREG-RRDEFDVSIAGQRDVRAMTEGFILHPPFKEKGRFLWLAEVCAIMWDIWGERND 349

Query: 318 RIFRGLVRSPGKVWSIIRYHVSLWASVTNLFCNYPLGIIMLDWRPF 364
           R+FRG  R   ++ S++R+HVSLW SV+ LFCNY LG I L   PF
Sbjct: 350 RVFRGKDRDLSEIGSLVRFHVSLWTSVSKLFCNYSLGNINLSLIPF 394

[Close]
BLAST of Spg021631 vs. ExPASy TrEMBL
Match: A0A1S4DXB1 (uncharacterized protein LOC107990976 OS=Cucumis melo OX=3656 GN=LOC107990976 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 9.4e-20
Identity = 56/142 (39.44%), Postives = 76/142 (53.52%), Query Frame = 0 

Query: 223 FVACEKELSSVWPVLLYSVSDGGGRLGSYFMEMCFCSFSLGDLLHLFWETAAGLLDVRAM 282
           ++ C       W  LL+SV +    L          S      L  F    A   DVR M
Sbjct: 34  WIGCPDFAFVSWSFLLHSVLED---LDHLLGHSALASGIWDAFLQTFGLLYARHRDVRGM 93

Query: 283 IKEFLLHPTYRGKGGFLWKAGMLALLWNLWGERNNRIFRGLVRSPGKVWSIIRYHVSLWA 342
           I+EFLL+     +G FLW+A + A+LW LW E N R+F G+ R  G++W +IRYHVSLW 
Sbjct: 94  IEEFLLNLPCGERGRFLWRACVCAILWVLWDETNRRVFWGVERGTGEIWLVIRYHVSLWD 153

Query: 343 SVTNLFCNYPLGIIMLDWRPFL 365
           S++  FCNYPL +I+  W  F+
Sbjct: 154 SISKTFCNYPLDMILYSWATFV 172

[Close]
BLAST of Spg021631 vs. ExPASy TrEMBL
Match: A0A5D3DJ76 (SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00180 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.6e-11
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 0 

Query: 275 GLLDVRAMIKEFLLHPTYRGKGGFLWKAGMLALLWNLWGERNNRIFRGLVRSPGKVWSII 334
           G  +V  +I EFLL    R KG FLW  G+ A++WNLWGERNNR+FRG+ R P +VWS++
Sbjct: 26  GQREVHLVIGEFLLRLPLREKGCFLWCVGVCAVIWNLWGERNNRVFRGVEREPCEVWSLV 85

Query: 335 R 336
           R
Sbjct: 86  R 86

[Close]
BLAST of Spg021631 vs. ExPASy TrEMBL
Match: A0A438F6T1 (zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_085247 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.0e-11
Identity = 48/138 (34.78%), Postives = 68/138 (49.28%), Query Frame = 0 

Query: 228 KELSSVWPVLLYSVSDGGGRLGSYFMEMCFCSFSLGDLLHLFWETAAGLLDVRAMIKEFL 287
           K LS  W +L       G  +   F+    C  ++G    LF     GL+ V     E +
Sbjct: 182 KVLSPQWCIL---CKGNGESIDHLFLH---CPITIGLWHRLF--NLVGLVWVPPRSLEDM 241

Query: 288 LHPTYRG-----KGGFLWKAGMLALLWNLWGERNNRIFRGLVRSPGKVWSIIRYHVSLWA 347
           L  T++G     +G  LW+   L L+W +W ERNNRIF    R+   VW +IR++ SLWA
Sbjct: 242 LVITFKGLGNSLRGKTLWQIACLTLIWMVWQERNNRIFEDKGRTEEMVWDLIRFYSSLWA 301

Query: 348 SVTNLFCNYPLGIIMLDW 361
           S T  F   PL ++ L+W
Sbjct: 302 SCTEAFRGVPLSVLQLNW 311

[Close]
BLAST of Spg021631 vs. ExPASy TrEMBL
Match: A0A438DJ08 (zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_097215 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.0e-10
Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 0 

Query: 258 CSFSLGDLLHLFWETAAGLLDVRAMIKEFLLHPTYRG-----KGGFLWKAGMLALLWNLW 317
           C  ++G    LF    AGL+ V     E +L  T++G     +G  LWK   L L+W +W
Sbjct: 204 CPITIGLWHKLF--NLAGLVWVPPKSFEDMLVITFKGLGNSLRGKTLWKIACLTLIWMVW 263

Query: 318 GERNNRIFRGLVRSPGKVWSIIRYHVSLWASVTNLFCNYPLGIIMLDW 361
            ERNNRIF    R+   +W +IR++ SLWAS T  F   PL ++ L+W
Sbjct: 264 QERNNRIFEDKGRTEEMLWDLIRFYSSLWASCTEAFRGVPLSVLQLNW 309

The following BLAST results are available for this feature:
BLAST of Spg021631 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK19563.14.6e-2150.94uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa][more]
XP_016900613.11.9e-1939.44PREDICTED: uncharacterized protein LOC107990976 [Cucumis melo][more]
TYK23653.17.4e-1155.74SIL1 [Cucumis melo var. makuwa][more]
RVW55720.11.7e-1034.78hypothetical protein CK203_085247 [Vitis vinifera][more]
RVW35460.12.2e-1038.89hypothetical protein CK203_097215 [Vitis vinifera][more]
BLAST of Spg021631 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg021631 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D7T22.2e-2150.94Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S4DXB19.4e-2039.44uncharacterized protein LOC107990976 OS=Cucumis melo OX=3656 GN=LOC107990976 PE=... [more]
A0A5D3DJ763.6e-1155.74SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00180 PE=4 SV=1[more]
A0A438F6T18.0e-1134.78zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_085247 PE=4... [more]
A0A438DJ081.0e-1038.89zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_097215 PE=4... [more]
BLAST of Spg021631 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg021631.1Spg021631.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane