Spg021625 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg021625
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy1-copia retrotransposon protein
Locationscaffold2: 17837387 .. 17844366 (+)
RNA-Seq ExpressionSpg021625
SyntenySpg021625
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCGTCCTCATCGAGTCGTTCGTCCGTTCCGCGCCAGTCGAGTCGTTCGTCTGCGCCAACCGAGTCATCCGTTCGTTTTGCGCCAGCCGAGTCGTCCGTTCTGTGCCGAGTAAGTCGTTGACCATGGGACATGTGGCACTCAATCCATCCTTACCGTGAGGACACGTGGCACGCATCCCTGCTGATTGGTTTTTTTCGGTTATGGCCACTTCCCTATAAATTCTTGTCTGAGCAGAGTTTCAGATCATTTAATTCGATCTGATTACATTTCTTCTTGATTCCAAATCCTTTTCTCTCGAGTGCACGAATGAGAAGGGTGTTATGTTAACCTTGGGGAGCAACCGGCGTAGATGATTTAGCACCTTGGTCGTGCCGAAATTGCTTTCAAGGCAGTGGTTTCATCCACTACACAACAATTGTTTCTTATTTTCTTCCTACAAGTTGAAAGCAATTTAAGATGTCCATTAAATCTGAGAAAGTGCTTCCAGATCTGTCCAAACTAGAACCCCTAGATGGTTCTAACTACCGTCGATGGTCTAAAAAATTGCTCATTTTCTTCGAACAACTGGAGGTCGACTACATTCTCACCACCGATTATGCGGAAAAATCAAAAGCAGCACCTACCACTGATCTGGAAAAGTCTAAGGAGATCTAGCCTAATCCTCACAGTTCTAAGGAGGTTCAAATTGTTCCTAAAAAATCAAAAGACAATGTTGACATTGATCCAGAAAAGTTCGAGAAAGACAACAAGACGGTTCGCGGTCATCTTCTCAATCACATGATTGACTCGTTGTTCGACTTGTTCATTGTTCACAAGTCATCTAAGGTGATCTGGGACACTCTGGAGTCCAGATATGACGACGATGATGCGGTAGAAAGAAGTACGTGGTCGGAAAGTGGTTACAGTTCCAAATGGTGGATGACAAACCAGTGATGGACCAGGTCCACGAGTACGAGAATCTGGTGGCAAACATTCTGACCGAGGATATGAAGATGTGCGAGATTCTTCAGGCGAATGTGCTGCTCGAGAAATTTTCTTCTTCATGGGGTGACTATGGCAACCATTTAAAACACAAGAAGAAGGACCTGACATTACAAGAGTTGATCAGCCACATGCACACTGAAGAAGCCAACAGGCAAAAAGATAAGCTACATTCTCAGTCTTTGAATTCAGTTAATGCTAACCTAGTTGAACCTTCTACTGCATCAAAATACAGGTTTAAAAATAAAAATAAATCCAAATCCTCGCATAAGAAGAACCATCAATTCAAGTCTCCTAGCTGGAAAATTGAGAAGGAGAAGTCCAAACTGATATGTTATGTCTGTGGAAAACCGAGGCACAAATCCTATCAGTGCAACCAGAGGAAAGGGAAACAAGATCGAAAGCCTGCTAGTGCACAAGCCAACGTTGTTGAAGCAGACAACATCATTGCAGCAGTGGTGGTGGAGGCTAACTTGGTGGAAAACAAATTCGACTGGATTCTTGACACTGGTGCTTCAAGACACTTCTGTTCAAACCGAAACCTTTTCCACGAATTCCAAGACACTATGGACGGCGAATGCGTATACATGGAGAACTCAGCCACAACTGTATTACTTGGAAAAGGGAAGGTTCTCTTAAAACTTACTTCTGAAAAAAACTTTATCTCTAAATGATGTATTGTATGTCCCTTTGTTACATAGGAATCTGGTGTTTGGAAGTTTATTGAACAAGGCAGGACTTAGAATTGTGTTTGAAGCTGACAAGGTTGTCATCACTAAAAATGGTGACTTTATTGGTAAGGGGTATTTAGCCGATGGTCTTTTTGTTTTAAATACTGTCTCTATTCCTGCTGAAATGAATGAAACTACGTCTCATTCTGCTTATATTGTTGAAGTATGACATGGTAGACTAGCTCATGTGAATATTGCTTCAATTAAAAGACTTAAAAAATTGCATCTTCTTAATGTATCTGAGACATCTGAAAGTAGTAGATACCCTGTATGTGTAGAGGCAAAATTTGTCAAAAAACCTTTTAAGCCTGTTACGACTAGATGTACTGGACTTCTTGAATTAATTCACTCTAATCTAGCTGATTTAAAAAACACTACTAGCAAAGGTGGCAAAAACTATTATATATCTTTTGTAGATGACCTCTCTAGATACACGAAAATATATCTTCTGAAATTAAAAGATGAGGCTGATGGATTGGAATTCCCAATTCTGTTAAAGCGGAAGTGCAATTGGACCGATTCGTAGTTAATTTCATTTTACAAAATACCGATACATTGACAATTATACAGAATTCAAAATTCTATAAATCTAGGCTAAGCAATTATATCTAATCTAAAGAATGAGAAGCATACCTCCGTTGACGACTCTGAATTCAACGGACACCACCACGAGGCCTTCCCCGCTATCCTCTGAGATTGGGAACGAAGTGGTGGGACACCCTCACGTTCTTGAATTTTGGGAAGTAAAATCAACAAGAGAGGAATTCTAAGATAAATACATTATAATATAAATTAATTAATTGTACATTAATTAATTAAACTATTTAATTAATTAACTATATATAATTAAACATCTCATATTTAATTATATATATATATATATATATGCGCATTAAATCATATTAGATGCACAAATCTCACATAATATATAGTTTTCATTAAAATTAATTAAATCGCATTTAATCAAATTGATCAAACTACATAATTAATTAATTCTTTGACCAATTAAATATCACATATTTAATTAATCAAACATTTGAATCATATTCAAATGTGCATCTCTCATATAACTTATAGTTTTAATATGAATCTAATTCACATTAAAATTAATCTATAGTTATTAATTTAATTAAATCACATTTAACTAAATTAAATTGAAACAATTAATTAATTCAAAATTAATTAATTTTATAATTAATTAAATATCAACCATATTTAATTAATTGCATATTAGAATCATATTCTAATATATCTCTCATATATTATAGTTTAATTAAATCACATTTAATTAGACTCAATTGAATAATTAATTAATTTATTCATCGATTAAATATCACATATTTAATTAGTTATATATTTGAACTCTTTCAGGTATATTATTCTCTCAATTTAATAAAGTTTAATCTCAAATTAAACTTTATATTATATTGTATCATTATACATTATATTAATTGTATCTTATACAACTAACTTGATTCCCAAGATGAATTTGAACTATTCAAATTCTTTCAAGATTAATTGTTCCCAATTACTCTTTATGAGCTAGCAATGGGACCTAATGGACCTACAGATCAAAAGCTTCAATGATATGAGGTTAACTGACTAAACTCATTAATCAAGTTAACCAATATTCATTAATTGTGGGTCACTCCACTAAAGACCCACCGTTGCACTCTTCTCACTATAGAATGTTTCTGTGTCCACAGATATTGACCAATAACGGTAAGTCAATCCTTCACGAGTGTTCGTAACTACAGCTGGATCAAATTACCGTTTTACCCCTGTGTTACATCTGTCTCCTTAAGTACCAGTGCTTCTCTAATGAACAAGCTGTTTATAGTCCAACCAGTAAACAGAAAGTCCCTCTCGGGCCAGTGAGAGGATGAGATCCCTTTGTTCAAGACCCGAAGTCACCACTTAAGGGAGCATTCATCTACTTCTCCTAGAAGTGGTAAGGAGTGAATTCCATCTTGTGTTTTCATGTCCCCATCCCCCACTCGATCTCATCCCCAAGAAGGTAGGCTTATTAAGTCGGCATGTAGGCCACTCTCATCCGTACTGATCAAAGGACAATCTCTCGTGAGAAGGAGTTCATGACACACTCAGGATTTAGACTGAGTTACCTAGGTCATCCTATTGAAATAGTAACCTAACTAGTTAATGGTGTTACATCTAGTGGTTTACTATTTCGTGGTCCGGTCTTATGCTAACTTATTGCATAGGATACCCCCGCTCGCATGTCTTCTACATGGACGCCTTGGATTAATACGTTTGTATCGAATACAAAGCGGGTCGTATCTCATAGTGTTACCAAGATAAGGTACCCAACCTTATCCTTGTACTATAGACCTTCTAGGTTGATACTTGAACACTGATCCTCGTATGTCCCCACATACTAATTCAAGTTACATATGAACAACCTTGGATCTTAGTTTATTGGATTTGGGTCATATTGTGCAATTTTAGACTTAATATGACAATAACACTTTATTGCATAAACCTCAATAACACTTTATTGATACAAGTGTATAATTCGTTAACATTCACTATCTACGAGTTTTAGGACATAAAACCCAACAGAAGCTAGTAGCATGTTTAGGAAATACAAAGCAGAAGTAGAAAACCAACTGGATAAAAAGATTAAAAGGTTAAGATTCGATAGGGGAGTTGAATACAGTGATAAGTCTCACAAGGGGTTTTGTGAATTAAATGGTATTATCCATGAGAGCACTGCACCATATTCCCCTGAACAAAATGGCATAGCTGAACATAAGAATAGGTCATTAAAGGAAATGATGAATGCTATGTTATTAAGTTCTGGATTACCTAACAGTATGTGGGGGGAAGCTGTGTTTTCTGCTTGTTTCATTCTTAACATGGTTCTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTAAATGAAACAAATTAATCGATCTCAATAAAGTGTTATTTGAGTAATTCAGTAATTTGGTTATTGAATAATCGAGTTTGCATTAATAAATCCTAAATCCAATAAACTAAGATCCAAGGTTGTTTAAATGAAACTTGGACTAGTATGTGGGGACATACGGGGATCAGTGTCCAAGTAACAACCTAAAATGTCTATAGTATAGGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGTGATACGACCCACCTTGTATTTGATACAGATGCAATGATCAGAAGCATCCATGTAAGAGACATGCGGGTGGGGGTATCCTATGCAATGAGTTTGCATAAGACCGGACCGCGAAATAGTAACCACTAGATGTAACGCCGTTAACTAGTTTAGGTTTCTATTTCAATAGGATGACCTAGGTAACTCAATCTCAATCCTGAGTCTGTTATGAACCCCTTTCAGGAGGGATTGTCCTTAGATTTGTATGGGTGAGAGTGGCCAGTTCGCCGACTCAATAATCCTACCATTTCAGGGGCAAGACCGAATGGGGGCTAGGAACATAACAGTACAAGATGGAATTCACTCCTTCCCCTATTGGGGTAAGTAGATGTGTGTTCCCTTAAGGGCTGATTCCGGGGCTTGAACAAAAGCGCGCCGTCCTCTCCTAGCCCAAGAGGAACTCCTGTTTAGTGGTTGGACCCTAAACAACTTGTTCATTAGAGGAATCAGTGGTACTTAAGGAACCAGAGGTAACCCAGGGGTAAAACGGTAATTTGACCCAGTTGGTGTTACGAACACACGTGAAGGATTGACTTACTGCATTCGTTGATATCCGTGGACACAAAAATATTCTACAGTGAGAAGAGTGCAGCTGTGGGTCTTTAGTGGAGTGACCCACAGTTAACGAATGTTGACTAAACTTGGTTAATGAGTTTGGCCAATTAGTCTCGTATCGTTGGAGCTTCTGATCTATAGGTCCATTAGGTCCCACTGGTAGCTCGCAAAGAGACTTGAGACAATTAAGTTTAAATTGTAAATTGAAAGTGTTCATGAAACTTTATAATATAATTTTTGAATTAATTTCAAAAATTAATTCTTGAGAGAAAATATTTGAAAAAGTTCAAATAAATTTAATATGAATTGGATTCATATTAATTTTAATTTTAATAAAATCCCTAAGATTAAATATATGATATTTAATTGGGTAAATTAATTAATTATGGAATTAATTAATTATTTATTAGAATTAGAGATCTTTTCCTATTAGGAAAGAAAATATTTGAAAGAGTTCAAATAAATTTAATATGAATTGGATTCATATTAATCTTAATTTTAATAAAATCTCTAAGATTAAATATATGATATTTAATTAGGGAAATTAATTAATTATGGAATTAATTAATTATTTATTAAAATTAGAGACCTTTTCCTATTAGGAAGGTCTTCCTTTTCCTATTAGGAAAAAGGTCTTGGCCTTTACCTATAAATAGGACCCCTAGGGTGGGGTGAAAGACATCCCATTCATTCTCCTACTCTCAGAGAATTTCCCTCAAGGCTTCCTCTAGACTCCCACCAGTCTCCTGCCTCTAGAAGTCTCAGAGTCATACCGGTGTAGCCATAGTGGTGGTGTTCGCACTAGTTCGTGATTAATTCACAAGCAGTTGGTGAATTTAATTTGAGTCGTCAACGAGAGTAAGTAATTTGTTACTATATAAATTAGATTTAGATTTAATATTTTTGTATGCTTAGCCTTAATATAAATCTAGAATAGTTCTAAGTTTATTGCCAATGTATTGATATTTTAGATTAAACAAAATTAATTACGAATCGGTCCCAATTACGCTTCCGCTTTACGGAATTACGGAATTCCAATCCTTCAATTGGTATCAGAGCCGATCGTAGATCTAATTTTGTTTCTCTAAAATTTGCATTGGCTATTGGTGGGATTGATTAATGCATAATGTATGTATGGTTTGCATTGAACTGTTTAGGTTAATTTTATGGCCATAGATTTTACTGTTTTTATGTGATTTGATCATGTAAGGGCCCGGTGTTTAGGGTATTTTATGTAAAATGGAGTCCTATGTAAGTCCGGGTCTAGAATAGGTTTTTATGAGATAAAAAACGGAGAAATCGCGACGCTATCACGATTACAGCATGCGTTAGGGATTTGCAACAGGCGTTTCAAGGCAGTTGGGCGGTCCGGTTCACGCGGTCTGGCTGGGCTGGGACCGATTTGGTCCGGTTCAGCTGGAATTTGGCGCGGTTCGTGGTTTTCGTAGCTGTTTCGAAGTGGTTCGGGTCGGTTCGAGCGGTCTAGACCAGTATTTGGAGCTGCAGAAGGACTTTTAG

mRNA sequence

ATGGTGCGTCCTCATCGAGTCGTTCGTCCGTTCCGCGCCAGTCGAGTCGTTCGTCTGCGCCAACCGAGTCATCCGTTCGTTTTGCGCCAGCCGAGTCGTCCGTTCTGTGCCGATTCTAAGGAGGTTCAAATTGTTCCTAAAAAATCAAAAGACAATGTTGACATTGATCCAGAAAAGTTCGAGAAAGACAACAAGACGGTTCGCGGTCATCTTCTCAATCACATGATTGACTCGTTGTTCGACTTGTTCATTGTTCACAAGTCATCTAAGGATACCCCCGCTCGCATGTCTTCTACATGGACGCCTTGGATTAATACGTTTGTATCGAATACAAAGCGGGTCGTATCTCATAGTGTTACCAAGATAAGGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGTGATACGACCCACCTTGTATTTGATACAGATGCAATGATCAGAAGCATCCATATTTGTATGGGTGAGAGTGGCCAGTTCGCCGACTCAATAATCCTACCATTTCAGGGGCAAGACCGAATGGGGGCTAGGAACATAACAGTACAAGATGGAATTCACTCCTTCCCCTATTGGGGCGTTTCAAGGCAGTTGGGCGGTCCGGTTCACGCGGTCTGGCTGGGCTGGGACCGATTTGGTCCGGTTCAGCTGGAATTTGGCGCGGTTCGTGGTTTTCGTAGCTGTTTCGAAGTGGTTCGGGTCGGTTCGAGCGGTCTAGACCAGTATTTGGAGCTGCAGAAGGACTTTTAG

Coding sequence (CDS)

ATGGTGCGTCCTCATCGAGTCGTTCGTCCGTTCCGCGCCAGTCGAGTCGTTCGTCTGCGCCAACCGAGTCATCCGTTCGTTTTGCGCCAGCCGAGTCGTCCGTTCTGTGCCGATTCTAAGGAGGTTCAAATTGTTCCTAAAAAATCAAAAGACAATGTTGACATTGATCCAGAAAAGTTCGAGAAAGACAACAAGACGGTTCGCGGTCATCTTCTCAATCACATGATTGACTCGTTGTTCGACTTGTTCATTGTTCACAAGTCATCTAAGGATACCCCCGCTCGCATGTCTTCTACATGGACGCCTTGGATTAATACGTTTGTATCGAATACAAAGCGGGTCGTATCTCATAGTGTTACCAAGATAAGGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGTGATACGACCCACCTTGTATTTGATACAGATGCAATGATCAGAAGCATCCATATTTGTATGGGTGAGAGTGGCCAGTTCGCCGACTCAATAATCCTACCATTTCAGGGGCAAGACCGAATGGGGGCTAGGAACATAACAGTACAAGATGGAATTCACTCCTTCCCCTATTGGGGCGTTTCAAGGCAGTTGGGCGGTCCGGTTCACGCGGTCTGGCTGGGCTGGGACCGATTTGGTCCGGTTCAGCTGGAATTTGGCGCGGTTCGTGGTTTTCGTAGCTGTTTCGAAGTGGTTCGGGTCGGTTCGAGCGGTCTAGACCAGTATTTGGAGCTGCAGAAGGACTTTTAG

Protein sequence

MVRPHRVVRPFRASRVVRLRQPSHPFVLRQPSRPFCADSKEVQIVPKKSKDNVDIDPEKFEKDNKTVRGHLLNHMIDSLFDLFIVHKSSKDTPARMSSTWTPWINTFVSNTKRVVSHSVTKIRDKAGYLILVTLCDTTHLVFDTDAMIRSIHICMGESGQFADSIILPFQGQDRMGARNITVQDGIHSFPYWGVSRQLGGPVHAVWLGWDRFGPVQLEFGAVRGFRSCFEVVRVGSSGLDQYLELQKDF
Homology
[Close]
BLAST of Spg021625 vs. NCBI nr
Match: TYK12162.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 8.1e-09
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 0 

Query: 25  PFVLRQPSRPFCADSKEVQIVPKKSKDNVDIDPEKFEKDNKTVRGHLLNHMIDSLFDLFI 84
           P     PS P  +    +  + +  KD V I+ EK+EKDNKTVRGHLLNHM+DSLFDLFI
Sbjct: 96  PATTPAPSDPESSTGPSIAAINQVKKDQV-INSEKYEKDNKTVRGHLLNHMLDSLFDLFI 155

Query: 85  VHKSSKD 92
             KS+KD
Sbjct: 156 AQKSAKD 161

[Close]
BLAST of Spg021625 vs. NCBI nr
Match: KAA0049713.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 8.1e-09
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 0 

Query: 25  PFVLRQPSRPFCADSKEVQIVPKKSKDNVDIDPEKFEKDNKTVRGHLLNHMIDSLFDLFI 84
           P     PS P  +    +  + +  KD V I+ EK+EKDNKTVRGHLLNHM+DSLFDLFI
Sbjct: 55  PATTPAPSDPESSTGPSIAAINQVKKDQV-INSEKYEKDNKTVRGHLLNHMLDSLFDLFI 114

Query: 85  VHKSSKD 92
             KS+KD
Sbjct: 115 AQKSAKD 120

[Close]
BLAST of Spg021625 vs. NCBI nr
Match: KAA0056672.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK04631.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-08
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 0 

Query: 42  VQIVPKKSKDNVDIDPEKFEKDNKTVRGHLLNHMIDSLFDLFIVHKSSKDTPA 95
           V +  +  KD V IDPEK+ KDNKTVRGHLLNHM D +FDLF+V KS+KDT A
Sbjct: 75  VAVADQVKKDQV-IDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSTKDTGA 126

[Close]
BLAST of Spg021625 vs. NCBI nr
Match: TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 5.2e-08
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 0 

Query: 42  VQIVPKKSKDNVDIDPEKFEKDNKTVRGHLLNHMIDSLFDLFIVHKSSKDTPARMSSTW 101
           V +  +  KD V IDPEK+ KDNKTVRGHLLNHM D +FDLF+V KS+KD  + + S +
Sbjct: 73  VAVTDQVKKDQV-IDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRY 130

[Close]
BLAST of Spg021625 vs. NCBI nr
Match: KAA0056761.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 5.2e-08
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 0 

Query: 42  VQIVPKKSKDNVDIDPEKFEKDNKTVRGHLLNHMIDSLFDLFIVHKSSKDTPARMSSTW 101
           V +  +  KD V IDPEK+ KDNKTVRGHLLNHM D +FDLF+V KS+KD  + + S +
Sbjct: 73  VAVTDQVKKDQV-IDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRY 130

[Close]
BLAST of Spg021625 vs. ExPASy TrEMBL
Match: A0A5A7U1H8 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G00570 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.9e-09
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 0 

Query: 25  PFVLRQPSRPFCADSKEVQIVPKKSKDNVDIDPEKFEKDNKTVRGHLLNHMIDSLFDLFI 84
           P     PS P  +    +  + +  KD V I+ EK+EKDNKTVRGHLLNHM+DSLFDLFI
Sbjct: 55  PATTPAPSDPESSTGPSIAAINQVKKDQV-INSEKYEKDNKTVRGHLLNHMLDSLFDLFI 114

Query: 85  VHKSSKD 92
             KS+KD
Sbjct: 115 AQKSAKD 120

[Close]
BLAST of Spg021625 vs. ExPASy TrEMBL
Match: A0A5D3CLH6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001020 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.9e-09
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 0 

Query: 25  PFVLRQPSRPFCADSKEVQIVPKKSKDNVDIDPEKFEKDNKTVRGHLLNHMIDSLFDLFI 84
           P     PS P  +    +  + +  KD V I+ EK+EKDNKTVRGHLLNHM+DSLFDLFI
Sbjct: 96  PATTPAPSDPESSTGPSIAAINQVKKDQV-INSEKYEKDNKTVRGHLLNHMLDSLFDLFI 155

Query: 85  VHKSSKD 92
             KS+KD
Sbjct: 156 AQKSAKD 161

[Close]
BLAST of Spg021625 vs. ExPASy TrEMBL
Match: A0A5A7ULG5 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold351G00390 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.1e-09
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 0 

Query: 42  VQIVPKKSKDNVDIDPEKFEKDNKTVRGHLLNHMIDSLFDLFIVHKSSKDTPA 95
           V +  +  KD V IDPEK+ KDNKTVRGHLLNHM D +FDLF+V KS+KDT A
Sbjct: 75  VAVADQVKKDQV-IDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSTKDTGA 126

[Close]
BLAST of Spg021625 vs. ExPASy TrEMBL
Match: A0A5D3BCA1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00190 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.5e-08
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 0 

Query: 39  SKEVQIVPKKSKDNVDIDPEKFEKDNKTVRGHLLNHMIDSLFDLFIVHKSSKDTPARMSS 98
           S  + +  +  KD V IDPEK+ KDNKTVRGHLLNHM DS+F+LF+V KS+KD  + + S
Sbjct: 70  STTIAVADQVKKDQV-IDPEKYAKDNKTVRGHLLNHMSDSMFNLFVVQKSAKDIWSTLES 129

Query: 99  TW 101
            +
Sbjct: 130 RY 130

[Close]
BLAST of Spg021625 vs. ExPASy TrEMBL
Match: A0A5A7SN16 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold581G00180 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.5e-08
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 0 

Query: 42  VQIVPKKSKDNVDIDPEKFEKDNKTVRGHLLNHMIDSLFDLFIVHKSSKDTPARMSSTW 101
           V +  +  KD V IDPEK+ KDNKTVRGHLLNHM D +FDLF+V KS+KD  + + S +
Sbjct: 69  VAVTDQVKKDQV-IDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRY 126

The following BLAST results are available for this feature:
BLAST of Spg021625 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK12162.18.1e-0955.22ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0049713.18.1e-0955.22ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0056672.11.1e-0866.04ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK04631.1 ty1-cop... [more]
TYK04394.15.2e-0857.63ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0056761.15.2e-0857.63ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Spg021625 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg021625 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U1H83.9e-0955.22Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3CLH63.9e-0955.22Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7ULG55.1e-0966.04Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3BCA12.5e-0854.84Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7SN162.5e-0857.63Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
BLAST of Spg021625 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg021625.1Spg021625.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding