Spg021608 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg021608
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Locationscaffold9: 5503528 .. 5511532 (+)
RNA-Seq ExpressionSpg021608
SyntenySpg021608
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCTCTACATCGTATGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTAATATGCCTTGCTAGATTTTTAATGACGAACTTGCGAGATGTTTTGGAAAGCCTTTATCCTTACACGTTTATGTTAAACGCTTTGATTGAGCATATTTATACGTTTAAAGGTTTATCACGTGTTTTGACTTCCGGATTTAGAGTTTTAAAGTTAGTCACTCACTGGGCTTCATAGCTCATTCTTTCAAAATGTTTTTCCACTTTCAGTTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGGGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTAAGGATTGGATAATTTAGTCCTAGAGGTCGTGGTTGTATAAACCCTAGTTGTATATGTTTTTGGTTGTGATATCTATATCAGGTTATTATCCGAACCAAGTTATGTCAGGGCGGCACCTCGTGTTTGTTGAAAGTTTTTTTTAAGGGATTCCGCTGTGTTCTGTTTCATGTAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAGTTCCATGGGAAATGAGACATGGTAGTTAGTGCTAAGAAAAATCCAGGAAGTAAATAGTTAGACGTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCCGAGTATTGTTGAGAGTGAGTCCAGTCAGGACTAGAATGTAGGTATAAGTTTAGTATCATGCATCTGAGTGAAGTATCTATAGCATGTCTGATGTGTTGATATGTTATAGGAGTCATGCCACCACGTACCAGCAGACGACGTAGGTAGAATCAGGACGGGACGCAGGATCCTACCCAAAGTCAATCTGAAAGGGGATCCAGTACCCCGAGAGGTCAGAATGAGGCTGGGAGTGAGCGATTTGCTAGATCTGCACAGGAGATCGGTAGGCCAGAGAGAGCAGGGCCTTGTGATCCGGAAAAGATGTATGGGATTGAACGGTTGAAGAAGTTAGGAGCCACAGTTTTTGAGGGTTCCACAGATCCAGCTGACGCCGAGGTCTAGTTGAATATGTTTGAGAAATGCTTCGACGTGATGAGTTGTCTTGAGGAGCGAAAAGTCAAACTAGCCACATTCCTACTATAGAAGGAGGCAGAGGGATGGTGGAAATCCATTTTAGCCAGGCGCAGTGATGCACGTATGTTAGACTGGCAGACATTCAGAGGCATATTCAAGGAAAAGTACTATCCCACCACGTATTGTGAGGCAAAGAGAGATGAGTTTCTGGAGCTGAAACAAGGGTCACTTTCAGTGGCCGAGTACGAGAGAAAGTATACCGAGCTTTCACGGTATGCTGAAGTGATTGTGGCATCTGAGAGTGACAGGTGTCGCAGGTTTGAGAGAGGGTTGCATTTTGAGATACGTACCCCAGTTACTGCTATTGCCAAGTGGACGGATTTTTCCCAACTAGTAGAGACTGCCTTACGTGTGGAGCAGAGTATTATAGAGGAAAAGACGACATTGGAGCCTAGTCGTGGAGCTCCAACAGCTAGTGGTTTCCGAGGTCGTGAGCAGCGGAGGTTCACACCTGGAGTGAATGTTTCAGGCCGTCAAGACTTCAAGCGCCGATCTGGTGGCCAATTGTCGAGGCAGATGAGTTCGGGTAGTGCCTATCCGAGGCAGAGTCAGAGAGCCCCCAGTCAGTCTGCGAGTTCAGTAGCAAGACCGCGGACGGGTCAGGAGTCCGTTGCTAGTGAATCCAGGAGAACCCCATGTGTAAGTTGTGGCAAGAATCATCGAGGTCAGTGTCTTGTTGGCGCCGGTGTGTGTTACCAGTGTGGACAACCAGGGCATTTCAAGAGGGATTGTCCACAGTTGAGGGCAGCAGTTCAGAGGAACCAGGGAGTTGAGTCCCACACAGTTGAGCAACCGAGAGTCTTAGCAGGCGCAGGAGAAGGCACAGTGGTGCAAGGCAAAAAGGGAGTTGTGGGGGGACCTAGGTAGTAGGGAAAAGTCTACGCCATGACCCAACAGGAAGCAGAGGATGCACCAGATGTGATTACTGGTACGATTTTGATTTGTAATGTACCTGCACGTGTTTTATTAGATCCAGACGCTACGCATTCCTTTGTTTCTAGTATGTTCTTAACTAAGCTGAATAGGATGCTAGAGCCTTTATCTGAGGAGTTAGTCATATGCACTCTAGTTGGTGACGTTTTATTAGTCAATGAAGTGTTGCGTGATTGTGAGGTTGTAGTAGAAGGTCTCTGTATGTTAGTGGATCTTCTTCCCCTAGAGTTGCAGGCGTTGGGTGTGATTAATGGATTTCTTATTCACTCACTATGCTTCTATGGATTGCCATAGGAAGGAAGTGACTTTTAAGAAACCAGGTTTGACTGAAGTAGTTTTCAGGGGTGAGAGGAAGGTTATTCCTAGGAGTTTGATTTCAGCTCTGAAAGCTGAGAAGTTATTGAGGAAGGGCTGCACAGCGTTTCTTGCACAAGTGGTAGAGGTGCAAGAAGAAAAGCTGAAACCAGAAGATGTTCCTGTGGTGAACGAATTTCTTGATGTTTTTCCAGCTGATCTATCGGGTTTGCCACCTGATAGACAGGTGGAGTTCACTATTGAATTGTTACCAGGAAAAGCACCTATTTCACAGGCACCATACTGAATGGCTCCGAGCGAGCTTAAGGAGCTGAAGGTACAGTTGCAAGAACTAGTTGACAAGGGATACATCAGGCCTAGTGTATCACCTTGGGGAGCTCCAGTGTTATTCGTGAAGAAGAAAGATGGTACCCTGAGATTATGCATTGATTACAGGCAGTTAAACAAGGTCACGATACATAACAAGTATCCTCTACCACGCATCGATGACTTGTTTGACTAGTTAAGAGGAGCAGCAGTGTTCTCTAAGATTGATATGAGGATTGTTCTACAGACACTACGTGATAAACAGCTATACGCTAAGTTCAGCAAATGTGAGTTCTGGTTGAATCAAGTAGTGTTCTTAGGGCAGGTAGTTTCAGCGGACGGAGTTAGTGTTGACCCGCAGAAAGTGGAAGCTGTTGTCAATTGGGAGAGACCAGCTAGTGCAACAGAGGTGCGTAGTTTCCTCGGTCTGGCCGGGTACTACAGACGTTTTGTTGAGGATTTCTCACGATTAGCATTACCCTTGACAGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCGGATAAATGCGAACAGAGTTTCCAGGAGCTGAAAAAGAGATTGGTGACAGCACCTATTCTGACACTTCCTGTAACAGGGAAGGAGTATGTGATCTATTTTGATGCTTCGAGGCAAGGATTAGGTTGTGTGCTTATGCAGGAAGGAAAGGTGATAGCTTATGCTTCAAGGCAGTTGAAGAAGCATGAGTGTAATTACCCTACCCATGATCTTGAGCTAGCAGCAGTTGTTTTAGCACTGAAGATCTGGAGACATTATTTATTCGGTGAGAAGTGCTACATTTTCACAGATCATAAGAGTCTGAAGTATATCTTTGATCAGAAAGAGCTGAATCTAAGGCAGAGGCGATGGCTGGAACTGATTAAAGACTATGACTGTACCATAGAATATCATCCAGGTAAGGCTAACGTGGTAGCAGATGCGTTAAGTAGGAAGTCGAGACTTCCGAAGAGTGCCTTGTGTGTTATTCGAGCAAGCTTGCTAAGTGAATTAAGAGGTTTCAAGGCAGTTATGACTGCAAAAAGCTCAGGGAGTCTTTTAGCTCAATTTCAGGTTAGGTCTTCTTTAGTAGCAGAGATTGTGAGAAAACAGCCAGAGGACAGTAATTTTCAGAAGATGCTTGCAAAGTCCAAGCAAGGCCCAGAGGCAGAATTTGAGTTGAGAGCGGACGGAGCCATAGTTAAGCAGGGAAGACTATGCATTCCGAGTATTAGTGAGCTTAAGAGTGCTATACTAGAGGAGGCTCACAGTTCAGCTTACGTTATGCATCCAGGAAGCACCAAGATGTATAGAACTCTGAAGAAAACTTACTGGTGGCATGGTATGAAGCGGGAGATAGCTGAATATGTCGATAGATGTTTGATCTGCCAACAAGTTAAACCAGTGAGACAGAGGCCAGGAGGACTCCTTAATCCACTGCCAGTGCCAGAGTGGAAGTGGGAGCATATTACCATGGATTTTCTGTTTGGATTACCTCGTACTTCTAGTGGACATGATGGTATATGGGTAATAGATGACACACTCACCAAGACAGCACGATTTATACCGATTAAAGCGACGTCTACACTAGATCAGCTAGCTAAGCTATACGTCGACAGGATTGTGAGTCAGCATGGAGTGCCAGTGTCCATAGTTTCAGATAGGGATCCGAGGTTTACTTCTATGTTTTGGCCTAGTGTGCAGAAAGCAATGGGAACAAAGTTGAAGTTCAGTACCACGTTCCATCCCCAGACAGATGGTCAGTCAGAGAGGACCATCCAGACTTTAGAGGACATGTTGAGAGCATGTGTCCTTCAGTTTAAGGGAAGTTGGGATACCCACTTATCACTTATGGAGTTCGCTTATAATAACAGCTACCAGTCTAGTATCGGCATGGCACCATTCGAGGCTTTGTATGCAGACCATGCAGGACTCCTGTGTGCTGGAACGAAGTGGGAGAGCGAAAGCTAGTTGGTCCTGAGTTGGTACAAGTTACGTCAGACAATATTAAGCTGATTAGGGAGAATCTAAAAATAGCTCAGGATCGACAGAAGAGCTATGCAGATAAGCGACGAAGAGACTTAGAGTTCAAGGTTGGAGATCAGGTTTTCTTGAAGTTATCTCCGTGGAGAGGTGTTGAAGGTGTTCTTCGCTTTGGGAGGAAAGGTAAGCTGAGACCTAGATATATTGGTCCTTACCAGATAATAGAACGAGTTGGACCAGCAGCCTATAGACTTGAGTTGCCAGTGGAACTCGCTCGAATACATGATGTTTTTCATGTGTCCATGTTGAGAAAATATATTCCAGATCCATCACATGTGTTGCAAGAGCAACTGATTGAGCTGAAAGAAGACTTGAGTTATAAAGAGGAAGCGGTTCAGATCCTCGACAGAAAGGAACAAGTTTTGAGGAACAAAACGATCCCACTCGTGAAAGTTCTTTGGAGACATCATGGGGTAGAGGAGGCAACCTGGGAGTCAGAGGATCGGATGAGGAGGAGTTACCCGACACTCTTCACCTAAGGACTTCTAAATTTCGAGGACGAAATTTCATAAGGGGGAGGTAAGTTGTAAACCCGAGACCTCCCTAGGATCATTTTCTCTTGTCATCTATTGTGGTTTCATGGTTGAACTTAAGTTGTTGGGATTTACCAAGTTAAAAGAAGAAAGAAAAGAAAAGGAAAGGAAAAGTAAAAAAAACAAAAGTGAAAAAAAAAAAAAGGAAAATGGGAATGGACAGCAAGACACCACCACCGACAGCCTTCTTTACCAGCCCATTACCATCCATTTTTCCATCATTTTCCATTCTAATTTTCAGAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAACAATTTCGTGGTTTTGAGGTTGAAGAAGGTAGGAAAAGATCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAAAGGTAAGGTTTGATTTTATTGAAAGTTAGTTCATTTTCTAACAAATTTCATGCAGGAAGCTTGAGCTAAATCGTATGAGAAGTTAATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAATCTTATTCAATTTCCTACAACTTTCATGAAGATTTCGTGAGCCAAAAATGACTTTAAGTAGGGTTAATGTCAGGAGATAGATACAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGAAATTCTGGACAAATCGGTTGAGAATCGCGTTTTTATTTCTTCAGGTAAGTTGTAGAGGGTTTGAAAATGAAGAGTTTGATGTGTATTTCATTAATTTTGGTTAAGTATTGAGGAAGTTATTGGTGTTGGAAGATGTGGTATTGAATCTGGAAAATCTGAAAAAGTAGAATGTGGAGTGAGATTTCTTATTCAAGTGTCTAGAATTTATGAGCATGGAAGAATGAGACCAACTATGGTTCTAATGCTCGGTTTTGGTTGTTCGACAGGCCAAGAGGAAATAGGTCGGGTCTACAAACCAGGGAACTAGCTAAGACTGTGAGTGACAAAATGAATTTCGAAAATTGTTTCCAACGGTTACTCATTTCTAGATGTTTTACATGCTTTTCTATGAATGCTTCATGATTTCTATTGACGGTTTCAAGCATGAGTTTGAGCTTAGATTTTCTAATGAGGTTTATATACGAGCACGTGGCTAATGACTTTATGAAAAGCAGTTGAAACAATATCTTTTAAAGTAAAGTATGTGTTAGCAAGTACTTCTAAATGATTTTCAGTTTTTCACGAGCAAGTTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTCATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGATGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTAATATGCCTTGCTAGATTTTTAATGACGAACTTGCGAGATGTTTTGGAAAGCCTTTATCCTTACACGTTTATGTTAAACGCTTTGATTGAGCATATTTATACGTTTAAAGGTTTATCACGTGTTTTGACTTCCGGATTTAGAGTTTTAAAGTTAGTCACTCACTGGGCTTCATAGCTCATTCTTTCAAAATGTTTTTCCACTTTCAGTTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGGGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTAAGGATTGGATAATTTAGTCCTAGAGGTCGTGGTTGTATAAACCCTAGTTGTATATGTTTTTGGTTGTGATATCTATATCAGGTTATTACCCGAACCAAGTTATGTCAGTGCGGCACCTCGTGTTTGTTGAAAGTTTTTTTTCAGGGATTCCGCTGTGTTCTGTTTCATGTAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACAGCCCACCTTGTATTCGATACAGATGCAATGATCCAAAGCATCCATGTAGGAGACATGCGGGTGGGGGTATCCTATGCAATGAGTTTGCATAAGACCGGACCGCGAAATAGTAACCACTAG

mRNA sequence

ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGTTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGGGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAACAATTTCGTGGTTTTGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTAAGTTGTAGAGGGTTTGAAAATGAAGAGTTTGATGTGCCAAGAGGAAATAGGTCGGGTCTACAAACCAGGGAACTAGCTAAGACTTTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTTATTACCCGAACCAAGTTATGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACAGCCCACCTTGTATTCGATACAGATGCAATGATCCAAAGCATCCATGTAGGAGACATGCGGGTGGGGGTATCCTATGCAATGAGTTTGCATAAGACCGGACCGCGAAATAGTAACCACTAG

Coding sequence (CDS)

ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGTTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGGGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAACAATTTCGTGGTTTTGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTAAGTTGTAGAGGGTTTGAAAATGAAGAGTTTGATGTGCCAAGAGGAAATAGGTCGGGTCTACAAACCAGGGAACTAGCTAAGACTTTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTTATTACCCGAACCAAGTTATGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACAGCCCACCTTGTATTCGATACAGATGCAATGATCCAAAGCATCCATGTAGGAGACATGCGGGTGGGGGTATCCTATGCAATGAGTTTGCATAAGACCGGACCGCGAAATAGTAACCACTAG

Protein sequence

MTEILSPRLYGTVCTQLEIELPVPDTLPTSAESSRTSSSTWVGLYIESVYYVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGEHLRERVKEEEEEQFRGFESTGFSSKAGGSLVFLWCFEHSGVYKLNQKLYLVSCRGFENEEFDVPRGNRSGLQTRELAKTLEIELPMPDTLPTSAESSRTSSSYYPNQVMFNVQEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVTAHLVFDTDAMIQSIHVGDMRVGVSYAMSLHKTGPRNSNH
Homology
[Close]
BLAST of Spg021608 vs. NCBI nr
Match: KAA0058280.1 (uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-22
Identity = 79/170 (46.47%), Postives = 91/170 (53.53%), Query Frame = 0 

Query: 105 GFESTGFSSKAGGSLVFLWCFEHSGVYKLNQKLYL---VSCRGFENEEFDVPRGNRSGLQ 164
           G +STGFSSK GG LVF        ++K NQKLYL   V     EN +  +PRGNR  LQ
Sbjct: 27  GTKSTGFSSKPGGFLVFSDALSILEIHKSNQKLYLVLEVRISNLENLKSGMPRGNRLSLQ 86

Query: 165 TRELAKT---------------LEIELPMPDTLPTSAESSRTSSS--------------- 224
           TREL KT               + IELP+PD LPTSAESS ++SS               
Sbjct: 87  TRELDKTVIFPLSTLSVLRDNNVVIELPVPDILPTSAESSGSNSSTWLELYFESVHVEMF 146

Query: 225 -YYPNQVM------FNVQEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVT 235
             + NQVM      FNV  G    +  DDVCWLHA+FRAK  GG GGGVT
Sbjct: 147 CSFTNQVMSELHLVFNVSVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVT 196

[Close]
BLAST of Spg021608 vs. NCBI nr
Match: KAA0064296.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK01032.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 2.0e-21
Identity = 75/153 (49.02%), Postives = 86/153 (56.21%), Query Frame = 0 

Query: 105 GFESTGFSSKAGGSLVFLWCFEHSGVYKLNQKLYLVSCRGFENEEFDVPRGNRSGLQTRE 164
           G +STGFSSK G  LVF        V K NQKLYL      E+ +   PRGN+  LQT E
Sbjct: 511 GTKSTGFSSKPGRFLVFSDALSILKVPKSNQKLYL----DIESGKSGKPRGNKPSLQTGE 570

Query: 165 LAKT-----------------LEIELPMPDTLPTSAESSRTSSSYYPNQVM------FNV 224
           L KT                 +EIEL +PDTLPTSAES  ++SSY+ NQVM      FNV
Sbjct: 571 LDKTVIFPLSTFSVLHDNDAVVEIELSVPDTLPTSAESYGSNSSYFTNQVMSGLHLVFNV 630

Query: 225 QEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVT 235
             G    +  DDVC LH +FRAK AGG GGGVT
Sbjct: 631 SVGSTGIVRGDDVCCLHVVFRAKTAGGPGGGVT 659

[Close]
BLAST of Spg021608 vs. NCBI nr
Match: TYK11835.1 (uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 5.9e-21
Identity = 83/200 (41.50%), Postives = 98/200 (49.00%), Query Frame = 0 

Query: 105 GFESTGFSSKAGGSLVFLWCFEHSGVYKLNQKLYLVSCRGFENEEFDVPRGNRSGLQTRE 164
           G +STGFSSK GG LV         ++KLNQKLYL             PRGNR  LQT E
Sbjct: 27  GTKSTGFSSKPGGFLVLSDALSILEIHKLNQKLYL------------GPRGNRLSLQTGE 86

Query: 165 LAKTL---------------EIELPMPDTLPTSAESSRTSSS----------------YY 224
           L KT+                IELP+PDTLPTSAESS ++SS                 +
Sbjct: 87  LDKTVIFSLSTLSVLRDNNAVIELPVPDTLPTSAESSGSNSSTWLELYFESVHVEMFCSF 146

Query: 225 PNQVM------FNVQEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVTAHLVFDTDAMIQS 268
            NQVM      FNV  G    +  DDVCWLHA+FRAK  GG GGGVT    +++      
Sbjct: 147 TNQVMSELHLVFNVSVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVT---TWESSTQRGQ 206

[Close]
BLAST of Spg021608 vs. NCBI nr
Match: KAA0062409.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 2.9e-20
Identity = 75/165 (45.45%), Postives = 87/165 (52.73%), Query Frame = 0 

Query: 109 TGFSSKAGGSLVFLWCFEHSGVYKLNQKLYLVSCRGFENEEFDVPRGNRSGLQTRELAKT 168
           TGFSSK GG LVF        V+K NQKLYL    G   +   + RGNRS LQ+ EL  T
Sbjct: 17  TGFSSKLGGFLVFSDALSILEVHKSNQKLYLDIESGKSGKWDVMLRGNRSSLQSGELDTT 76

Query: 169 -----------------LEIELPMPDTLPTSAESSRTSSS----------------YYPN 228
                            +EIELP+PDTLPTSAESS ++SS                Y+ N
Sbjct: 77  VIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTN 136

Query: 229 QVM------FNVQEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVT 235
           QVM      F+V  G    +  DDVCWLHA+FRAK  GG GGGVT
Sbjct: 137 QVMSRLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVT 181

[Close]
BLAST of Spg021608 vs. NCBI nr
Match: TYK26572.1 (putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 2.9e-20
Identity = 75/165 (45.45%), Postives = 87/165 (52.73%), Query Frame = 0 

Query: 109 TGFSSKAGGSLVFLWCFEHSGVYKLNQKLYLVSCRGFENEEFDVPRGNRSGLQTRELAKT 168
           TGFSSK GG LVF        V+K NQKLYL    G   +   + RGNRS LQ+ EL  T
Sbjct: 17  TGFSSKLGGFLVFSDALSILEVHKSNQKLYLDIESGKSGKWDVMLRGNRSSLQSGELDTT 76

Query: 169 -----------------LEIELPMPDTLPTSAESSRTSSS----------------YYPN 228
                            +EIELP+PDTLPTSAESS ++SS                Y+ N
Sbjct: 77  VIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTN 136

Query: 229 QVM------FNVQEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVT 235
           QVM      F+V  G    +  DDVCWLHA+FRAK  GG GGGVT
Sbjct: 137 QVMSRLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVT 181

[Close]
BLAST of Spg021608 vs. ExPASy TrEMBL
Match: A0A5A7VD33 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00370 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.9e-22
Identity = 75/153 (49.02%), Postives = 86/153 (56.21%), Query Frame = 0 

Query: 105 GFESTGFSSKAGGSLVFLWCFEHSGVYKLNQKLYLVSCRGFENEEFDVPRGNRSGLQTRE 164
           G +STGFSSK G  LVF        V K NQKLYL      E+ +   PRGN+  LQT E
Sbjct: 511 GTKSTGFSSKPGRFLVFSDALSILKVPKSNQKLYL----DIESGKSGKPRGNKPSLQTGE 570

Query: 165 LAKT-----------------LEIELPMPDTLPTSAESSRTSSSYYPNQVM------FNV 224
           L KT                 +EIEL +PDTLPTSAES  ++SSY+ NQVM      FNV
Sbjct: 571 LDKTVIFPLSTFSVLHDNDAVVEIELSVPDTLPTSAESYGSNSSYFTNQVMSGLHLVFNV 630

Query: 225 QEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVT 235
             G    +  DDVC LH +FRAK AGG GGGVT
Sbjct: 631 SVGSTGIVRGDDVCCLHVVFRAKTAGGPGGGVT 659

[Close]
BLAST of Spg021608 vs. ExPASy TrEMBL
Match: A0A5D3CJX3 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00520 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.9e-21
Identity = 83/200 (41.50%), Postives = 98/200 (49.00%), Query Frame = 0 

Query: 105 GFESTGFSSKAGGSLVFLWCFEHSGVYKLNQKLYLVSCRGFENEEFDVPRGNRSGLQTRE 164
           G +STGFSSK GG LV         ++KLNQKLYL             PRGNR  LQT E
Sbjct: 27  GTKSTGFSSKPGGFLVLSDALSILEIHKLNQKLYL------------GPRGNRLSLQTGE 86

Query: 165 LAKTL---------------EIELPMPDTLPTSAESSRTSSS----------------YY 224
           L KT+                IELP+PDTLPTSAESS ++SS                 +
Sbjct: 87  LDKTVIFSLSTLSVLRDNNAVIELPVPDTLPTSAESSGSNSSTWLELYFESVHVEMFCSF 146

Query: 225 PNQVM------FNVQEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVTAHLVFDTDAMIQS 268
            NQVM      FNV  G    +  DDVCWLHA+FRAK  GG GGGVT    +++      
Sbjct: 147 TNQVMSELHLVFNVSVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVT---TWESSTQRGQ 206

[Close]
BLAST of Spg021608 vs. ExPASy TrEMBL
Match: A0A5A7V9N3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G002110 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-20
Identity = 75/165 (45.45%), Postives = 87/165 (52.73%), Query Frame = 0 

Query: 109 TGFSSKAGGSLVFLWCFEHSGVYKLNQKLYLVSCRGFENEEFDVPRGNRSGLQTRELAKT 168
           TGFSSK GG LVF        V+K NQKLYL    G   +   + RGNRS LQ+ EL  T
Sbjct: 17  TGFSSKLGGFLVFSDALSILEVHKSNQKLYLDIESGKSGKWDVMLRGNRSSLQSGELDTT 76

Query: 169 -----------------LEIELPMPDTLPTSAESSRTSSS----------------YYPN 228
                            +EIELP+PDTLPTSAESS ++SS                Y+ N
Sbjct: 77  VIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTN 136

Query: 229 QVM------FNVQEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVT 235
           QVM      F+V  G    +  DDVCWLHA+FRAK  GG GGGVT
Sbjct: 137 QVMSRLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVT 181

[Close]
BLAST of Spg021608 vs. ExPASy TrEMBL
Match: A0A5D3DSY7 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001810 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-20
Identity = 75/165 (45.45%), Postives = 87/165 (52.73%), Query Frame = 0 

Query: 109 TGFSSKAGGSLVFLWCFEHSGVYKLNQKLYLVSCRGFENEEFDVPRGNRSGLQTRELAKT 168
           TGFSSK GG LVF        V+K NQKLYL    G   +   + RGNRS LQ+ EL  T
Sbjct: 17  TGFSSKLGGFLVFSDALSILEVHKSNQKLYLDIESGKSGKWDVMLRGNRSSLQSGELDTT 76

Query: 169 -----------------LEIELPMPDTLPTSAESSRTSSS----------------YYPN 228
                            +EIELP+PDTLPTSAESS ++SS                Y+ N
Sbjct: 77  VIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTN 136

Query: 229 QVM------FNVQEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVT 235
           QVM      F+V  G    +  DDVCWLHA+FRAK  GG GGGVT
Sbjct: 137 QVMSRLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVT 181

[Close]
BLAST of Spg021608 vs. ExPASy TrEMBL
Match: A0A5D3C0X3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002850 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.2e-20
Identity = 98/301 (32.56%), Postives = 130/301 (43.19%), Query Frame = 0 

Query: 1   MTEILSPRLYGTVCTQ-----------------LEIELPVPDTLPTSAES-SRTSSSTWV 60
           MTEILS +LY TVCT                  +EIELPVPDTLPTSAES ++T    W 
Sbjct: 1   MTEILSLKLYSTVCTHVIFPLSTLSVLSDNDAVVEIELPVPDTLPTSAESFNQTPVRGWS 60

Query: 61  GLYIESVYYVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGEHLRERVKEEEEEQ 120
            +    +    V FNV  G    +  DDV WLHA+FRAK+AG P G     + ++E ++ 
Sbjct: 61  CILSLFMLKCFVRFNVSVGSIGIIRGDDVCWLHAVFRAKIAGSPRGGVTTWQNQDETQDP 120

Query: 121 FRGFESTGFSSKAGGSLVFLWCFEHSG----------------VYKLNQKLYLVSCRGFE 180
            +G    G S+  G +      F  S                 +Y + ++L  +    FE
Sbjct: 121 TQGQSERGSSTPRGQNEARSERFARSAQEIGRPEIAGPSDPEKMYGI-ERLKKLGATVFE 180

Query: 181 NE------EFDVPRGNRSGLQTRELAKTLEIEL----------------PMPDTLPTSAE 240
           +       E  V    +S +     A+TL+ +                    D      +
Sbjct: 181 SSTDPADVEKKVEGWWKSIIVRHNDARTLDWQTFKGIFEEKYYPTIYCEAKRDEFLELKQ 240

Query: 241 SSRTSSSY---YPNQVMFNVQEGQRVSLEEDDVCWLHAIFRAKLAGGLGGGVTAHLVFDT 243
            S +   Y   Y     FNV  G    +  DDVCWLHA+FRAK AGG G GVT  LVF  
Sbjct: 241 GSLSVVEYERKYTELSRFNVSVGSTEIVRGDDVCWLHAVFRAKTAGGPGRGVTLSLVFIC 300

The following BLAST results are available for this feature:
BLAST of Spg021608 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0058280.11.1e-2246.47uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa][more]
KAA0064296.12.0e-2149.02putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK... [more]
TYK11835.15.9e-2141.50uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa][more]
KAA0062409.12.9e-2045.45reverse transcriptase [Cucumis melo var. makuwa][more]
TYK26572.12.9e-2045.45putative Retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Spg021608 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg021608 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VD339.9e-2249.02Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=... [more]
A0A5D3CJX32.9e-2141.50CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7V9N31.4e-2045.45Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15... [more]
A0A5D3DSY71.4e-2045.45Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5D3C0X33.2e-2032.56Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
BLAST of Spg021608 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg021608.1Spg021608.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process
molecular_function GO:0016740 transferase activity