Spg021593 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg021593
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA/RNA polymerases superfamily protein
Locationscaffold9: 5606545 .. 5609856 (+)
RNA-Seq ExpressionSpg021593
SyntenySpg021593
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTAGAAGTAGGTTTAATTTCAGGAGAAAAGTAGAGGATTGCAAAGAAGCACGAATTTGGAATAGTTGTGTTCGGGGACTTTCTGGACAAATCCGTTGGGAATCGCATTTTCATTCCTTCAAGTAAGTTATAGAGGGTTCTAAAATGAAGAGTTTGATATACAGTACATTAATTTTGGTCAAGTATTGAGAAATTTATGAGTGTTTGAAGTTAGGGTATTGAATTTGGAAAATTCTGAGAAAAATGTGAAATGTGATTTTATTTCTAGAGTTTAGAATTCATGAGCATGGAAAGACAAGACTATTATAGTTCTGATGCTCGATTTTGGTTTGTTTGACAGGCCAAGAGAAAATAGGCCGAGTCTACAGACCAGGGAACTAGCCAAGGCTGTGAGTGATAAAACAAATTTCGAAAATGATTTCTAAACTGTTATTTATGCTTAAATGGTTTACATGCTTGAATCTGAACTTATGAATGATACATGATTTCTATGAATGGTTTCATGCATAAGTTTTGAGCATAGATTTTCTAATGAGATTTATATATGAGCACGTGATTATTGACTTTCTGAAAAGTAGTTGAAACGATATCATGTTAAGCAAAGTATGTATTAGCGAGTATTGTTTAAAGATTTTCAATTTTCACGATCAAGCTGAGTAAGCTTGAGTTTTACGAAAGATAAAGATAACCAGGCATGTTTTAATGTTTTCAAGTGATTTTCTAAGACTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCATGACAATGATGCTGTCGTGAGTGCTGGCGGGTCCCACTACGATAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGAGTAAACGTCGGTTGTACTGGACGTGCCCTACACAACGTAGACTAGTCATGCTAGTTAAAATGTTTAATATACTTGATATGCCTTGCTAGATTTTAATGACATACCTGCTGAGTATTTGAGAAAGTTGTTATCATTACACGTTTATATTTCACGCTTTGATTAAACAGATTTATATGTTTAAGGTTTATCATGTGTTCTGATTTGCGGATTAACAGTTTTAAATTTAGTCACTCACTGGGCTTTATAGCTCACTCTTTCAAAATGTTTTTCCACTTTCCAGGTAAAGATCGAGCTCCCGGTGCCTGTTAAACTGCCATAGTCTGCTAAAAGCTCCCAGATCAAGTTCCAGTACGTGGGTGGAGTTATACATCGAGTCTGTTTATATTGTAAATGTCTTTGTAAGGATTGGATAGTTTACGATTTGTGTAAGCTCTAGATGTTCTGGTTGTGTAAACCCTAGTTGGATATGTTTTTGGTTGTGATGTCTCTATCAGGTTTATTTTCCAAAACGAGTTATGTCAGAGTTGCGCTTCATGTATGTCTAAAGGTTATCAAGGTTCCGCTGTGTTGTGTTGCATGTGAAGTATTACATATCTAAGATTAGCATGTTTATCAGGCTCAACGATTCAGCAGGATCAACAAGTATCGTTAGAGGAGGACGATGTTTGTTGGCTTCACGCCATCTCCCAGACTAAGCTAGCAGGTAATTCGGGAGGGGGTGTGACAGGTTATGTGCACTTCATCATTGCCCATTGTCCGAGGAGTCCCTATTGTTGCACTTCATTGAAGAATTAACACCCGACGACAGAAGGATGTTGGATATAGCAAGTGGTGGGGATGCACTAGACAAAACACCCAGTGAGGCTAGAGAGATAATTTTGAGCCTGGCAACGTATGTTAGACTCATCATATTTCAAGCACGAAAGGTAAATTCTTCCCATTCCTCGAATAGCCAAACTCCTGAGCAACAACAAGAAGGTATGTCTAATGAGGTTAGTGAGCCTGAGCTTGAGCCTTCTTTATATTTTGAGTCTGATTAGTGTGATTCCCCATGCATGGTAGGAGAGATGGAAACAGCTGATGAGTTAGTTTTAGTTCATTTTAAGCAAAAATCTATTTCCCCTGAGCTTATTGATTTCGAATTGCATGAGTTAGATTTAGTTATTTCGATGGTTGACGAGTCTGTTGCTAAATATAAAGATGTTTTGATTGATATGTTGGAGATGATGATTGATAATCAGTTTAAATTTTATTATGCTTTGCACTCTATGTCCAAGAGGTTGATTTCAGATGAGAAGCGAGGAGAATGTGGTCGAGCAAACGACCTTAAACATTTACACCCTATAATTTTACTACTTTTTGTCTTTTAAATCTTAGATAGGTTTATTTTTATTAGATGCTTTTATGCTTGTTTTCTTGTTTTTGTCTTTTAGGAATGGCGGTACCAAAGCGATGCCTCTTTATTTGTAAGAAAACATGATTCACCACCCATGAGCGCGAAATTCAGGGAAGTTCTATTCTTTCCCTATACAGTGTCTTGTTCTTCATGATTTATTACTTTGAGGGCAATGTAAACTTTAGGTTGGGGGTGGGGAATTACACTTTATATTTCTGTTGGGCCTTGAGCATCTGAGCGCCAGGCCAGCGTTTGTGCTTAATGAATGTCTTGCATGTTTGTTGTGTATATACTTGTTTAAGTGATGATGATTTCCTAGGATTGACTCAAATTTTTTCGAAAATTTATTGCTTTTGATGAGTTATGACCGAAAGTGTTCAAAAAAGGAGCCTTTTTAAAACTTTTCTTGGATATGTCTTGCACATGTTGGGTGTCTTTCTTGCCTTAAAGTAGGACTTGAATGCTTAGGAGCGAGTTACCTAGCTCATATTCCTGTTGTCACCCCGATAGGTGTAATGTTAAGCGAGAAAGTCTAAATTGTTTGCAAAATAGTGTGTGGAGTCTTGCCTAGGAGAGAAAAAGAAAATATGCCTGTAAAAAAAGAGTGGAAAAATAAGTCAGTGAGCGCGAGCTAAAAGAAAAATCATATGCTCGTTATTTTTATTTTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCTTGCATTGAGCTTAACGCGTAGGGGTAAAAAGAGATACCTACAGTGTGATCAGTTATGCCAACTGATAACTCTCCAAAAGGGAGTTATTTAGGCCTTAGTTTTATAGTGATTTGTGTGTCATATGTGCTAAATAGGGTTGCTTTTAGATGAATATAATATGTTTTAACCCATTTGGGAGAATGGATGCTTTGGAAGTTATTTTGTGCAGAATATATTGATGAGCGACTTGAGGGAGTAAAATCTGCAATCCAGCAAAGCAGGGAACAAAACTGCCATGTCACAGCTCGTTAG

mRNA sequence

ATGACTAGAAGTAGGTTTAATTTCAGGAGAAAAGTAGAGGATTGCAAAGAAGCACGAATTTGGAATAGTTGTGTTCGGGGACTTTCTGGACAAATCCGTTGGGAATCGCATTTTCATTCCTTCAAGCCAAGAGAAAATAGGCCGAGTCTACAGACCAGGGAACTAGCCAAGGCTCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCATGACAATGATGCTGTCGTGAGTGCTGGCGGGTCCCACTACGATAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGAGTAAACGTCGGTTGTACTGGACGTGCCCTACACAACGTAAAGATCGAGCTCCCGGTGCCTGTTAAACTGCCATAG

Coding sequence (CDS)

ATGACTAGAAGTAGGTTTAATTTCAGGAGAAAAGTAGAGGATTGCAAAGAAGCACGAATTTGGAATAGTTGTGTTCGGGGACTTTCTGGACAAATCCGTTGGGAATCGCATTTTCATTCCTTCAAGCCAAGAGAAAATAGGCCGAGTCTACAGACCAGGGAACTAGCCAAGGCTCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCATGACAATGATGCTGTCGTGAGTGCTGGCGGGTCCCACTACGATAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGAGTAAACGTCGGTTGTACTGGACGTGCCCTACACAACGTAAAGATCGAGCTCCCGGTGCCTGTTAAACTGCCATAG

Protein sequence

MTRSRFNFRRKVEDCKEARIWNSCVRGLSGQIRWESHFHSFKPRENRPSLQTRELAKAPEAIWYRVHTGYIPLLTLSVLHDNDAVVSAGGSHYDKDDGSAGRAPLHRRVNVGCTGRALHNVKIELPVPVKLP
Homology
[Close]
BLAST of Spg021593 vs. NCBI nr
Match: TYK08801.1 (hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 6.0e-11
Identity = 52/107 (48.60%), Postives = 59/107 (55.14%), Query Frame = 0 

Query: 43  PRENRPSLQTRELAKAPEAIWYRVH------------TGYIPLLTLSVLHDNDAVVSAGG 102
           PR NR SLQT +L K   +I Y                   PL TLSVL DNDAVVS G 
Sbjct: 154 PRGNRSSLQTGQLDKIEISIDYMTEILSLRLYGTVCPQVIFPLSTLSVLRDNDAVVSVGQ 213

Query: 103 SHYDKDDG-SAGRAPLHRRVNVGCTGRALHNV----KIELPVPVKLP 133
           +HYDKDDG   G   +   VNVGCTGR LH++    +IEL VP  LP
Sbjct: 214 THYDKDDGVPGGPHYIVGLVNVGCTGRVLHHIDRSLEIELLVPDTLP 260

[Close]
BLAST of Spg021593 vs. NCBI nr
Match: KAA0065516.1 (uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 5.1e-10
Identity = 43/68 (63.24%), Postives = 45/68 (66.18%), Query Frame = 0 

Query: 43  PRENRPSLQTRELAKAPEAIWYRVHTGYIPLLTLSVLHDNDAVVSAGGSHYDKDDGSAGR 102
           PR NR SLQT EL K          T    L TLSVL DNDAVVSAGG HYDKDDG+A R
Sbjct: 520 PRGNRSSLQTGELDK----------TVRFSLSTLSVLRDNDAVVSAGGPHYDKDDGNAVR 577

Query: 103 APLHRRVN 111
           APLHRR +
Sbjct: 580 APLHRRTS 577

[Close]
BLAST of Spg021593 vs. NCBI nr
Match: TYJ98800.1 (uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 5.1e-10
Identity = 43/68 (63.24%), Postives = 45/68 (66.18%), Query Frame = 0 

Query: 43  PRENRPSLQTRELAKAPEAIWYRVHTGYIPLLTLSVLHDNDAVVSAGGSHYDKDDGSAGR 102
           PR NR SLQT EL K          T    L TLSVL DNDAVVSAGG HYDKDDG+A R
Sbjct: 106 PRGNRSSLQTGELDK----------TVRFSLSTLSVLRDNDAVVSAGGPHYDKDDGNAVR 163

Query: 103 APLHRRVN 111
           APLHRR +
Sbjct: 166 APLHRRTS 163

[Close]
BLAST of Spg021593 vs. NCBI nr
Match: KAA0037923.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK19000.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 8.6e-10
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = 0 

Query: 26  RGLSGQIRWESHFHSFKPRENRPSLQTRELAK---APEAIWYRVHTGYIPLLTLSVLHDN 85
           RG+S    WE   H F+ R  +PS QT++LA+    PEAIWYRVH G+IPLLTLSVL +N
Sbjct: 103 RGISEVFYWECGLHIFRIRRIKPSFQTKDLAQDNVEPEAIWYRVHIGWIPLLTLSVLRNN 162

[Close]
BLAST of Spg021593 vs. NCBI nr
Match: TYK02787.1 (RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 4.4e-06
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 0 

Query: 64  YRVHTGYIPLLTLSVLHDNDAVVSAGGSHYDKDDGSAGRAPLHRRVN 111
           YRVHT YI LLTLSVL DN+ ++S       KDDGSAGR PLHRR +
Sbjct: 749 YRVHTSYISLLTLSVLRDNNVIMSVERVPLVKDDGSAGRTPLHRRTS 795

[Close]
BLAST of Spg021593 vs. ExPASy TrEMBL
Match: A0A5D3CAC6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00040 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.9e-11
Identity = 52/107 (48.60%), Postives = 59/107 (55.14%), Query Frame = 0 

Query: 43  PRENRPSLQTRELAKAPEAIWYRVH------------TGYIPLLTLSVLHDNDAVVSAGG 102
           PR NR SLQT +L K   +I Y                   PL TLSVL DNDAVVS G 
Sbjct: 154 PRGNRSSLQTGQLDKIEISIDYMTEILSLRLYGTVCPQVIFPLSTLSVLRDNDAVVSVGQ 213

Query: 103 SHYDKDDG-SAGRAPLHRRVNVGCTGRALHNV----KIELPVPVKLP 133
           +HYDKDDG   G   +   VNVGCTGR LH++    +IEL VP  LP
Sbjct: 214 THYDKDDGVPGGPHYIVGLVNVGCTGRVLHHIDRSLEIELLVPDTLP 260

[Close]
BLAST of Spg021593 vs. ExPASy TrEMBL
Match: A0A5A7VGQ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00090 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.5e-10
Identity = 43/68 (63.24%), Postives = 45/68 (66.18%), Query Frame = 0 

Query: 43  PRENRPSLQTRELAKAPEAIWYRVHTGYIPLLTLSVLHDNDAVVSAGGSHYDKDDGSAGR 102
           PR NR SLQT EL K          T    L TLSVL DNDAVVSAGG HYDKDDG+A R
Sbjct: 520 PRGNRSSLQTGELDK----------TVRFSLSTLSVLRDNDAVVSAGGPHYDKDDGNAVR 577

Query: 103 APLHRRVN 111
           APLHRR +
Sbjct: 580 APLHRRTS 577

[Close]
BLAST of Spg021593 vs. ExPASy TrEMBL
Match: A0A5D3BG85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1625G00140 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.5e-10
Identity = 43/68 (63.24%), Postives = 45/68 (66.18%), Query Frame = 0 

Query: 43  PRENRPSLQTRELAKAPEAIWYRVHTGYIPLLTLSVLHDNDAVVSAGGSHYDKDDGSAGR 102
           PR NR SLQT EL K          T    L TLSVL DNDAVVSAGG HYDKDDG+A R
Sbjct: 106 PRGNRSSLQTGELDK----------TVRFSLSTLSVLRDNDAVVSAGGPHYDKDDGNAVR 163

Query: 103 APLHRRVN 111
           APLHRR +
Sbjct: 166 APLHRRTS 163

[Close]
BLAST of Spg021593 vs. ExPASy TrEMBL
Match: A0A5A7T4K8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold154G00260 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.2e-10
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = 0 

Query: 26  RGLSGQIRWESHFHSFKPRENRPSLQTRELAK---APEAIWYRVHTGYIPLLTLSVLHDN 85
           RG+S    WE   H F+ R  +PS QT++LA+    PEAIWYRVH G+IPLLTLSVL +N
Sbjct: 103 RGISEVFYWECGLHIFRIRRIKPSFQTKDLAQDNVEPEAIWYRVHIGWIPLLTLSVLRNN 162

[Close]
BLAST of Spg021593 vs. ExPASy TrEMBL
Match: A0A5D3BTJ5 (RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00460 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.2e-06
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 0 

Query: 64  YRVHTGYIPLLTLSVLHDNDAVVSAGGSHYDKDDGSAGRAPLHRRVN 111
           YRVHT YI LLTLSVL DN+ ++S       KDDGSAGR PLHRR +
Sbjct: 749 YRVHTSYISLLTLSVLRDNNVIMSVERVPLVKDDGSAGRTPLHRRTS 795

The following BLAST results are available for this feature:
BLAST of Spg021593 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK08801.16.0e-1148.60hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa][more]
KAA0065516.15.1e-1063.24uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa][more]
TYJ98800.15.1e-1063.24uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa][more]
KAA0037923.18.6e-1057.14putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK... [more]
TYK02787.14.4e-0663.83RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-c... [more]
BLAST of Spg021593 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg021593 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CAC62.9e-1148.60Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VGQ52.5e-1063.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BG852.5e-1063.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T4K84.2e-1057.14Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15... [more]
A0A5D3BTJ52.2e-0663.83RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-c... [more]
BLAST of Spg021593 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg021593.1Spg021593.1mRNA